Wall clock time and date at job start Mon Mar 30 2020 02:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42901 * 109.47034 * 2 1 4 4 C 1.50705 * 109.47275 * 120.00246 * 2 1 3 5 5 H 1.07997 * 119.99508 * 120.00343 * 4 2 1 6 6 C 1.37872 * 119.99802 * 300.00356 * 4 2 1 7 7 N 1.31515 * 120.00267 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99988 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46750 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47026 * 119.99885 * 8 6 4 11 11 H 1.48495 * 109.47135 * 239.99816 * 8 6 4 12 12 C 1.53001 * 109.47345 * 240.00250 * 2 1 3 13 13 H 1.08996 * 109.54106 * 299.90385 * 12 2 1 14 14 C 1.53120 * 109.50234 * 60.00115 * 12 2 1 15 15 C 1.53119 * 109.16202 * 177.59979 * 14 12 2 16 16 C 1.53044 * 109.27589 * 302.34077 * 15 14 12 17 17 N 1.46847 * 109.51335 * 59.18419 * 16 15 14 18 18 C 1.46847 * 111.20163 * 298.24410 * 17 16 15 19 19 H 1.09007 * 109.47246 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47472 * 299.99252 * 1 2 3 21 21 H 1.09001 * 109.47270 * 59.99937 * 1 2 3 22 22 H 0.96703 * 113.99698 * 179.97438 * 3 2 1 23 23 H 0.96999 * 120.00046 * 180.02562 * 7 6 4 24 24 H 1.08993 * 109.52850 * 57.69063 * 14 12 2 25 25 H 1.09003 * 109.52252 * 297.50032 * 14 12 2 26 26 H 1.09000 * 109.50507 * 182.40742 * 15 14 12 27 27 H 1.08996 * 109.50916 * 62.28058 * 15 14 12 28 28 H 1.09002 * 109.46396 * 179.19729 * 16 15 14 29 29 H 1.08994 * 109.46485 * 299.17654 * 16 15 14 30 30 H 1.00902 * 110.99979 * 62.35429 * 17 16 15 31 31 H 1.09005 * 109.46836 * 301.74653 * 18 17 16 32 32 H 1.08995 * 109.45748 * 181.76188 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3213 -1.1205 4.0079 9 1 3.1454 -2.2879 3.6036 10 1 3.1464 -0.1876 4.8165 11 1 1.1660 -1.5869 4.8160 12 6 2.0400 -0.7212 -1.2493 13 1 1.6787 -1.7495 -1.2496 14 6 1.5300 0.0001 -2.4999 15 6 2.0936 -0.6918 -3.7442 16 6 3.6225 -0.6888 -3.6751 17 7 4.0601 -1.3910 -2.4619 18 6 3.5704 -0.7173 -1.2525 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 2.9702 1.4236 0.0004 23 1 0.7094 1.1616 3.4845 24 1 1.8586 1.0392 -2.4807 25 1 0.4409 -0.0380 -2.5238 26 1 1.7687 -0.1571 -4.6366 27 1 1.7332 -1.7197 -3.7837 28 1 4.0267 -1.1934 -4.5526 29 1 3.9828 0.3395 -3.6493 30 1 3.7713 -2.3577 -2.4796 31 1 3.9309 0.3113 -1.2383 32 1 3.9367 -1.2428 -0.3706 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878011.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:32 Heat of formation + Delta-G solvation = -85.906089 kcal Electronic energy + Delta-G solvation = -13789.270241 eV Core-core repulsion = 11555.051105 eV Total energy + Delta-G solvation = -2234.219136 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.32635 -37.36424 -34.25157 -32.96141 -32.02489 -29.71139 -27.39211 -24.56424 -23.79348 -21.83487 -20.48926 -18.85236 -17.07543 -16.61990 -16.39941 -15.83725 -15.51719 -15.09867 -14.16994 -13.94416 -13.69416 -13.39326 -12.98313 -12.88745 -12.81579 -12.47786 -12.41695 -12.11910 -11.95881 -11.86531 -11.59743 -11.33344 -10.82117 -10.56598 -9.92024 -9.10167 -7.99862 -6.26165 1.39214 1.42919 1.52434 2.42687 3.19346 3.50513 3.93989 4.09197 4.16743 4.25258 4.31082 4.57174 4.65923 4.75804 4.85355 4.95971 5.09117 5.12214 5.16862 5.22449 5.24720 5.41828 5.51395 5.63455 5.80348 6.06960 6.17369 6.29970 6.57487 6.82041 7.42270 7.65500 8.97863 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049525 B = 0.011702 C = 0.010376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.240367 B = 2392.226175 C = 2697.806235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.248 3.752 3 O -0.576 6.576 4 C -0.565 4.565 5 H 0.055 0.945 6 C 0.032 3.968 7 N -0.890 5.890 8 Si 0.945 3.055 9 H -0.267 1.267 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.128 4.128 13 H 0.051 0.949 14 C -0.108 4.108 15 C -0.149 4.149 16 C 0.058 3.942 17 N -0.689 5.689 18 C 0.077 3.923 19 H 0.038 0.962 20 H 0.055 0.945 21 H 0.029 0.971 22 H 0.352 0.648 23 H 0.256 0.744 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.342 0.658 31 H 0.060 0.940 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.311 -3.700 -9.565 10.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.209 3.791 3 O -0.381 6.381 4 C -0.603 4.603 5 H 0.073 0.927 6 C -0.170 4.170 7 N -0.527 5.527 8 Si 0.772 3.228 9 H -0.191 1.191 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.149 4.149 13 H 0.070 0.930 14 C -0.146 4.146 15 C -0.188 4.188 16 C -0.072 4.072 17 N -0.317 5.317 18 C -0.052 4.052 19 H 0.058 0.942 20 H 0.074 0.926 21 H 0.047 0.953 22 H 0.197 0.803 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.159 0.841 31 H 0.079 0.921 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.215 -3.152 -9.438 10.457 hybrid contribution -0.449 -0.623 1.233 1.453 sum 2.766 -3.775 -8.205 9.445 Atomic orbital electron populations 1.21564 0.97232 0.98898 1.00116 1.18682 0.90852 0.79396 0.90176 1.86464 1.24198 1.30234 1.97160 1.21992 1.32825 1.13207 0.92239 0.92658 1.25712 0.94575 0.95100 1.01663 1.70158 1.36215 1.23160 1.23191 0.85728 0.78109 0.78868 0.80143 1.19072 1.20956 1.21020 1.22254 0.97668 0.98855 0.96097 0.93028 1.21530 0.99559 0.99227 0.94263 1.22236 0.97940 1.00826 0.97778 1.22066 0.92575 0.99633 0.92885 1.60763 1.62426 1.06384 1.02077 1.21803 0.91974 0.99053 0.92411 0.94247 0.92587 0.95252 0.80340 0.93482 0.92985 0.93271 0.90385 0.91998 0.88965 0.91667 0.84115 0.92116 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.96 8.27 71.98 0.60 -5.36 16 2 C 0.25 11.99 0.42 -11.54 0.00 11.98 16 3 O -0.58 -29.09 11.62 -148.98 -1.73 -30.82 16 4 C -0.56 -29.76 7.50 25.60 0.19 -29.57 16 5 H 0.06 2.87 6.72 -2.91 -0.02 2.85 16 6 C 0.03 1.72 5.24 84.65 0.44 2.16 16 7 N -0.89 -51.43 10.87 21.45 0.23 -51.20 16 8 Si 0.95 43.08 29.54 68.60 2.03 45.11 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 C -0.13 -5.00 1.71 -10.74 -0.02 -5.01 16 13 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 14 C -0.11 -3.71 4.74 30.67 0.15 -3.56 16 15 C -0.15 -3.87 6.08 30.65 0.19 -3.68 16 16 C 0.06 1.45 6.55 86.33 0.57 2.02 16 17 N -0.69 -20.16 6.87 -513.99 -3.53 -23.68 16 18 C 0.08 2.76 5.28 86.33 0.46 3.22 16 19 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 20 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 21 H 0.03 1.32 6.49 -2.39 -0.02 1.30 16 22 H 0.35 16.15 7.30 -74.06 -0.54 15.60 16 23 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 24 H 0.05 1.90 7.62 -2.39 -0.02 1.89 16 25 H 0.05 1.74 6.58 -2.39 -0.02 1.73 16 26 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.34 9.23 8.86 -89.69 -0.79 8.43 16 31 H 0.06 2.23 6.73 -2.38 -0.02 2.21 16 32 H 0.06 2.55 6.66 -2.39 -0.02 2.53 16 Total: -1.00 -59.33 246.21 -0.66 -59.99 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: -0.22 Total: 28.41 kcal Atomic # 6 Polarization: -30.37 SS G_CDS: 2.56 Total: -27.81 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -3.30 Total: -74.88 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.73 Total: -30.82 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -59.33 -0.66 -59.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878011.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.917 kcal (2) G-P(sol) polarization free energy of solvation -59.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds