Wall clock time and date at job start Mon Mar 30 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 O 1.42904 * 109.47293 * 179.97438 * 10 9 7 12 12 C 1.42895 * 113.99914 * 179.97438 * 11 10 9 13 13 H 1.09005 * 110.01706 * 330.70477 * 12 11 10 14 14 C 1.53875 * 110.03357 * 92.09634 * 12 11 10 15 15 C 1.54259 * 106.59886 * 119.28440 * 14 12 11 16 16 C 1.54885 * 104.19826 * 23.60924 * 15 14 12 17 17 H 1.09003 * 110.75453 * 80.55698 * 16 15 14 18 18 N 1.46901 * 110.75838 * 203.74287 * 16 15 14 19 19 C 1.54267 * 110.03099 * 209.31395 * 12 11 10 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 22 22 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 23 23 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 24 24 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 25 25 H 1.09006 * 110.03190 * 238.56826 * 14 12 11 26 26 H 1.08999 * 110.03178 * 359.94543 * 14 12 11 27 27 H 1.09004 * 110.48742 * 142.28866 * 15 14 12 28 28 H 1.09003 * 110.48608 * 264.93076 * 15 14 12 29 29 H 1.00902 * 110.99989 * 298.54540 * 18 16 15 30 30 H 1.00902 * 111.00218 * 62.49710 * 18 16 15 31 31 H 1.08996 * 110.48570 * 335.78168 * 19 12 11 32 32 H 1.09002 * 110.48896 * 98.42800 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5307 -4.8997 0.0001 12 6 2.3706 -6.0557 -0.0005 13 1 3.3122 -5.8326 -0.5023 14 6 2.6388 -6.5132 1.4440 15 6 2.0795 -7.9459 1.5636 16 6 2.0756 -8.4748 0.1078 17 1 3.0699 -8.8146 -0.1824 18 7 1.0919 -9.5541 -0.0513 19 6 1.6583 -7.2261 -0.7095 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5571 0.8897 22 1 0.6240 -2.5568 -0.8903 23 1 2.8719 -3.6044 -0.8906 24 1 2.8719 -3.6044 0.8894 25 1 3.7105 -6.5129 1.6430 26 1 2.1290 -5.8528 2.1455 27 1 2.7286 -8.5577 2.1900 28 1 1.0665 -7.9277 1.9655 29 1 1.3150 -10.3375 0.5442 30 1 0.1565 -9.2199 0.1261 31 1 0.5772 -7.0917 -0.6751 32 1 2.0004 -7.3124 -1.7408 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086406839.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:48 Heat of formation + Delta-G solvation = -95.069894 kcal Electronic energy + Delta-G solvation = -12634.347891 eV Core-core repulsion = 10399.731383 eV Total energy + Delta-G solvation = -2234.616509 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.10799 -37.66677 -35.33764 -33.16053 -31.74234 -29.44962 -27.01943 -26.30277 -22.95256 -21.35622 -21.34165 -18.72653 -17.72867 -17.02827 -16.69973 -16.34934 -16.04973 -15.24789 -14.57001 -14.32395 -14.25450 -13.67407 -13.27375 -12.94789 -12.82353 -12.73687 -12.38103 -12.21830 -12.06001 -11.77505 -11.47119 -11.42910 -11.30471 -10.65422 -10.34777 -9.58685 -8.25020 -6.38651 1.40344 1.42955 1.54230 2.36860 2.87307 3.08784 3.49133 3.61494 3.96137 3.98949 4.33401 4.38007 4.40552 4.46961 4.51386 4.64875 4.68224 4.88757 4.94921 5.02492 5.08982 5.25862 5.31908 5.37217 5.55540 5.72223 6.10533 6.22068 6.49824 6.61618 6.77346 7.31442 8.88214 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.090021 B = 0.005770 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.962951 B = 4851.933186 C = 4950.246575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.260 1.260 6 H -0.280 1.280 7 C -0.547 4.547 8 H 0.068 0.932 9 C 0.027 3.973 10 C 0.086 3.914 11 O -0.407 6.407 12 C 0.070 3.930 13 H 0.068 0.932 14 C -0.145 4.145 15 C -0.147 4.147 16 C 0.097 3.903 17 H 0.101 0.899 18 N -0.846 5.846 19 C -0.113 4.113 20 H 0.266 0.734 21 H -0.008 1.008 22 H -0.007 1.007 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.082 0.918 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.353 0.647 30 H 0.344 0.656 31 H 0.063 0.937 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.313 -15.586 2.024 16.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.184 1.184 6 H -0.206 1.206 7 C -0.585 4.585 8 H 0.086 0.914 9 C -0.010 4.010 10 C 0.010 3.990 11 O -0.328 6.328 12 C 0.012 3.988 13 H 0.086 0.914 14 C -0.184 4.184 15 C -0.187 4.187 16 C -0.015 4.015 17 H 0.119 0.881 18 N -0.375 5.375 19 C -0.151 4.151 20 H 0.075 0.925 21 H 0.010 0.990 22 H 0.011 0.989 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.167 0.833 30 H 0.157 0.843 31 H 0.082 0.918 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.210 -15.542 1.251 16.783 hybrid contribution -0.040 1.300 1.062 1.680 sum 6.170 -14.241 2.313 15.692 Atomic orbital electron populations 1.70132 1.08101 1.28127 1.50883 1.26069 0.95818 1.03730 0.94198 0.85287 0.78568 0.77535 0.78672 1.19504 1.18353 1.20580 1.21479 0.93736 0.91454 1.51831 0.91413 1.18942 0.94645 0.92063 0.95331 1.22479 0.94712 0.82897 0.98915 1.87942 1.35420 1.14333 1.95065 1.22991 0.93782 0.85868 0.96173 0.91388 1.22621 1.01835 0.97558 0.96360 1.23107 1.01312 0.95452 0.98820 1.22338 0.96885 0.89876 0.92359 0.88085 1.58808 1.05738 1.10024 1.62967 1.22447 1.00797 0.92507 0.99385 0.92511 0.98952 0.98890 0.93755 0.93833 0.89972 0.92807 0.89600 0.92134 0.83306 0.84307 0.91788 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.12 13.29 21.45 0.28 -57.83 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.98 44.32 29.54 68.60 2.03 46.35 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.55 -31.93 9.11 25.60 0.23 -31.69 16 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 9 C 0.03 1.56 5.34 29.85 0.16 1.72 16 10 C 0.09 3.89 5.72 71.98 0.41 4.30 16 11 O -0.41 -17.10 9.90 -148.98 -1.47 -18.57 16 12 C 0.07 2.14 3.38 31.32 0.11 2.25 16 13 H 0.07 1.94 7.81 -2.38 -0.02 1.92 16 14 C -0.15 -3.78 6.61 31.32 0.21 -3.58 16 15 C -0.15 -2.95 6.51 31.66 0.21 -2.75 16 16 C 0.10 1.92 4.06 46.23 0.19 2.11 16 17 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 18 N -0.85 -14.71 9.39 -163.23 -1.53 -16.25 16 19 C -0.11 -2.97 6.22 31.70 0.20 -2.77 16 20 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 21 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 22 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 23 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 24 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.05 1.65 7.95 -2.39 -0.02 1.63 16 27 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.35 4.56 9.07 -89.69 -0.81 3.74 16 30 H 0.34 5.95 8.86 -89.69 -0.79 5.16 16 31 H 0.06 1.88 7.93 -2.39 -0.02 1.86 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -66.96 266.74 0.96 -66.00 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -0.51 Total: 10.26 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 2.17 Total: -29.95 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -1.25 Total: -74.08 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -1.47 Total: -18.57 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -66.96 0.96 -66.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086406839.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.075 kcal (2) G-P(sol) polarization free energy of solvation -66.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds