Wall clock time and date at job start Mon Mar 30 2020 01:58:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86798 * 120.00321 * 2 1
4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1
5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1
6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1
7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1
9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1
10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2
11 11 O 1.42904 * 109.47293 * 179.97438 * 10 9 7
12 12 C 1.42895 * 113.99914 * 179.97438 * 11 10 9
13 13 H 1.09005 * 110.01706 * 330.70477 * 12 11 10
14 14 C 1.53875 * 110.03357 * 92.09634 * 12 11 10
15 15 C 1.54259 * 106.59886 * 119.28440 * 14 12 11
16 16 C 1.54885 * 104.19826 * 23.60924 * 15 14 12
17 17 H 1.09003 * 110.75453 * 80.55698 * 16 15 14
18 18 N 1.46901 * 110.75838 * 203.74287 * 16 15 14
19 19 C 1.54267 * 110.03099 * 209.31395 * 12 11 10
20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3
21 21 H 1.09007 * 109.47443 * 300.00164 * 9 7 2
22 22 H 1.09003 * 109.47615 * 60.00205 * 9 7 2
23 23 H 1.09002 * 109.46926 * 299.99825 * 10 9 7
24 24 H 1.08998 * 109.46837 * 60.00021 * 10 9 7
25 25 H 1.09006 * 110.03190 * 238.56826 * 14 12 11
26 26 H 1.08999 * 110.03178 * 359.94543 * 14 12 11
27 27 H 1.09004 * 110.48742 * 142.28866 * 15 14 12
28 28 H 1.09003 * 110.48608 * 264.93076 * 15 14 12
29 29 H 1.00902 * 110.99989 * 298.54540 * 18 16 15
30 30 H 1.00902 * 111.00218 * 62.49710 * 18 16 15
31 31 H 1.08996 * 110.48570 * 335.78168 * 19 12 11
32 32 H 1.09002 * 110.48896 * 98.42800 * 19 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 1.4001
5 1 3.5468 1.4401 -0.7001
6 1 1.4467 2.6526 -0.7001
7 6 2.0046 -1.1941 -0.0005
8 1 3.0846 -1.1941 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 6 2.2453 -3.6621 -0.0005
11 8 1.5307 -4.8997 0.0001
12 6 2.3706 -6.0557 -0.0005
13 1 3.3122 -5.8326 -0.5023
14 6 2.6388 -6.5132 1.4440
15 6 2.0795 -7.9459 1.5636
16 6 2.0756 -8.4748 0.1078
17 1 3.0699 -8.8146 -0.1824
18 7 1.0919 -9.5541 -0.0513
19 6 1.6583 -7.2261 -0.7095
20 1 -0.4850 0.8401 0.0004
21 1 0.6247 -2.5571 0.8897
22 1 0.6240 -2.5568 -0.8903
23 1 2.8719 -3.6044 -0.8906
24 1 2.8719 -3.6044 0.8894
25 1 3.7105 -6.5129 1.6430
26 1 2.1290 -5.8528 2.1455
27 1 2.7286 -8.5577 2.1900
28 1 1.0665 -7.9277 1.9655
29 1 1.3150 -10.3375 0.5442
30 1 0.1565 -9.2199 0.1261
31 1 0.5772 -7.0917 -0.6751
32 1 2.0004 -7.3124 -1.7408
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000086406839.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:58:48
Heat of formation + Delta-G solvation = -95.069894 kcal
Electronic energy + Delta-G solvation = -12634.347891 eV
Core-core repulsion = 10399.731383 eV
Total energy + Delta-G solvation = -2234.616509 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 199.131 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-40.10799 -37.66677 -35.33764 -33.16053 -31.74234 -29.44962 -27.01943 -26.30277
-22.95256 -21.35622 -21.34165 -18.72653 -17.72867 -17.02827 -16.69973 -16.34934
-16.04973 -15.24789 -14.57001 -14.32395 -14.25450 -13.67407 -13.27375 -12.94789
-12.82353 -12.73687 -12.38103 -12.21830 -12.06001 -11.77505 -11.47119 -11.42910
-11.30471 -10.65422 -10.34777 -9.58685 -8.25020 -6.38651 1.40344 1.42955
1.54230 2.36860 2.87307 3.08784 3.49133 3.61494 3.96137 3.98949
4.33401 4.38007 4.40552 4.46961 4.51386 4.64875 4.68224 4.88757
4.94921 5.02492 5.08982 5.25862 5.31908 5.37217 5.55540 5.72223
6.10533 6.22068 6.49824 6.61618 6.77346 7.31442 8.88214
Molecular weight = 199.13amu
Principal moments of inertia in cm(-1)
A = 0.090021 B = 0.005770 C = 0.005655
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 310.962951 B = 4851.933186 C = 4950.246575
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C 0.000 4.000
3 Si 0.976 3.024
4 H -0.270 1.270
5 H -0.260 1.260
6 H -0.280 1.280
7 C -0.547 4.547
8 H 0.068 0.932
9 C 0.027 3.973
10 C 0.086 3.914
11 O -0.407 6.407
12 C 0.070 3.930
13 H 0.068 0.932
14 C -0.145 4.145
15 C -0.147 4.147
16 C 0.097 3.903
17 H 0.101 0.899
18 N -0.846 5.846
19 C -0.113 4.113
20 H 0.266 0.734
21 H -0.008 1.008
22 H -0.007 1.007
23 H 0.044 0.956
24 H 0.043 0.957
25 H 0.082 0.918
26 H 0.053 0.947
27 H 0.085 0.915
28 H 0.060 0.940
29 H 0.353 0.647
30 H 0.344 0.656
31 H 0.063 0.937
32 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.313 -15.586 2.024 16.938
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.198 4.198
3 Si 0.799 3.201
4 H -0.195 1.195
5 H -0.184 1.184
6 H -0.206 1.206
7 C -0.585 4.585
8 H 0.086 0.914
9 C -0.010 4.010
10 C 0.010 3.990
11 O -0.328 6.328
12 C 0.012 3.988
13 H 0.086 0.914
14 C -0.184 4.184
15 C -0.187 4.187
16 C -0.015 4.015
17 H 0.119 0.881
18 N -0.375 5.375
19 C -0.151 4.151
20 H 0.075 0.925
21 H 0.010 0.990
22 H 0.011 0.989
23 H 0.062 0.938
24 H 0.062 0.938
25 H 0.100 0.900
26 H 0.072 0.928
27 H 0.104 0.896
28 H 0.079 0.921
29 H 0.167 0.833
30 H 0.157 0.843
31 H 0.082 0.918
32 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 6.210 -15.542 1.251 16.783
hybrid contribution -0.040 1.300 1.062 1.680
sum 6.170 -14.241 2.313 15.692
Atomic orbital electron populations
1.70132 1.08101 1.28127 1.50883 1.26069 0.95818 1.03730 0.94198
0.85287 0.78568 0.77535 0.78672 1.19504 1.18353 1.20580 1.21479
0.93736 0.91454 1.51831 0.91413 1.18942 0.94645 0.92063 0.95331
1.22479 0.94712 0.82897 0.98915 1.87942 1.35420 1.14333 1.95065
1.22991 0.93782 0.85868 0.96173 0.91388 1.22621 1.01835 0.97558
0.96360 1.23107 1.01312 0.95452 0.98820 1.22338 0.96885 0.89876
0.92359 0.88085 1.58808 1.05738 1.10024 1.62967 1.22447 1.00797
0.92507 0.99385 0.92511 0.98952 0.98890 0.93755 0.93833 0.89972
0.92807 0.89600 0.92134 0.83306 0.84307 0.91788 0.90447
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.12 13.29 21.45 0.28 -57.83 16
2 C 0.00 0.00 5.46 84.66 0.46 0.46 16
3 Si 0.98 44.32 29.54 68.60 2.03 46.35 16
4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16
5 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16
6 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16
7 C -0.55 -31.93 9.11 25.60 0.23 -31.69 16
8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16
9 C 0.03 1.56 5.34 29.85 0.16 1.72 16
10 C 0.09 3.89 5.72 71.98 0.41 4.30 16
11 O -0.41 -17.10 9.90 -148.98 -1.47 -18.57 16
12 C 0.07 2.14 3.38 31.32 0.11 2.25 16
13 H 0.07 1.94 7.81 -2.38 -0.02 1.92 16
14 C -0.15 -3.78 6.61 31.32 0.21 -3.58 16
15 C -0.15 -2.95 6.51 31.66 0.21 -2.75 16
16 C 0.10 1.92 4.06 46.23 0.19 2.11 16
17 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16
18 N -0.85 -14.71 9.39 -163.23 -1.53 -16.25 16
19 C -0.11 -2.97 6.22 31.70 0.20 -2.77 16
20 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16
21 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16
22 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16
23 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16
24 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16
25 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16
26 H 0.05 1.65 7.95 -2.39 -0.02 1.63 16
27 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16
28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16
29 H 0.35 4.56 9.07 -89.69 -0.81 3.74 16
30 H 0.34 5.95 8.86 -89.69 -0.79 5.16 16
31 H 0.06 1.88 7.93 -2.39 -0.02 1.86 16
32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16
Total: -1.00 -66.96 266.74 0.96 -66.00
By element:
Atomic # 1 Polarization: 10.77 SS G_CDS: -0.51 Total: 10.26 kcal
Atomic # 6 Polarization: -32.12 SS G_CDS: 2.17 Total: -29.95 kcal
Atomic # 7 Polarization: -72.83 SS G_CDS: -1.25 Total: -74.08 kcal
Atomic # 8 Polarization: -17.10 SS G_CDS: -1.47 Total: -18.57 kcal
Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal
Total: -66.96 0.96 -66.00 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000086406839.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.075 kcal
(2) G-P(sol) polarization free energy of solvation -66.957 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.032 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.962 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.995 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.070 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds