Wall clock time and date at job start Mon Mar 30 2020 01:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00385 * 2 1 4 4 H 1.48496 * 109.47387 * 239.99906 * 3 2 1 5 5 H 1.48500 * 109.46757 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46877 * 119.99984 * 3 2 1 7 7 C 1.37882 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00066 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00299 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.47612 * 180.02562 * 11 10 9 13 13 C 1.46896 * 111.00243 * 185.04239 * 12 11 10 14 14 C 1.52995 * 115.55479 * 279.59170 * 13 12 11 15 15 O 1.42903 * 109.46904 * 302.02090 * 14 13 12 16 16 C 1.52999 * 117.49795 * 133.87684 * 13 12 11 17 17 C 1.52993 * 60.00293 * 252.51387 * 16 13 12 18 18 H 0.96997 * 119.99679 * 0.02562 * 1 2 3 19 19 H 1.09007 * 109.47159 * 59.99470 * 9 7 2 20 20 H 1.09005 * 109.46816 * 299.99775 * 9 7 2 21 21 H 1.08995 * 109.47309 * 299.99937 * 10 9 7 22 22 H 1.09007 * 109.47049 * 59.99837 * 10 9 7 23 23 H 1.09005 * 109.46998 * 300.00379 * 11 10 9 24 24 H 1.09007 * 109.46882 * 60.00016 * 11 10 9 25 25 H 1.00898 * 110.99238 * 61.09195 * 12 11 10 26 26 H 1.09001 * 109.47253 * 62.01436 * 14 13 12 27 27 H 1.08997 * 109.47393 * 182.02223 * 14 13 12 28 28 H 0.96696 * 114.00469 * 179.97438 * 15 14 13 29 29 H 1.09009 * 117.49801 * 0.02562 * 16 13 12 30 30 H 1.08998 * 117.49774 * 145.01979 * 16 13 12 31 31 H 1.09001 * 117.50052 * 252.50724 * 17 16 13 32 32 H 1.09004 * 117.51960 * 107.47939 * 17 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4802 -4.9872 0.0012 12 7 2.4347 -6.1038 0.0018 13 6 1.7384 -7.3917 -0.1181 14 6 1.1326 -7.9375 1.1765 15 8 2.1603 -8.0838 2.1586 16 6 2.2948 -8.4050 -1.1204 17 6 0.9873 -7.6700 -1.4217 18 1 -0.4849 0.8400 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5567 0.8904 21 1 2.8718 -3.6045 -0.8894 22 1 2.8719 -3.6044 0.8906 23 1 0.8537 -5.0446 0.8914 24 1 0.8532 -5.0451 -0.8886 25 1 3.0156 -6.0823 0.8265 26 1 0.3753 -7.2448 1.5436 27 1 0.6746 -8.9074 0.9827 28 1 1.8476 -8.4260 3.0072 29 1 3.1779 -8.1161 -1.6905 30 1 2.2296 -9.4607 -0.8574 31 1 0.0618 -8.2422 -1.3571 32 1 1.0094 -6.8972 -2.1902 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126421985.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:21 Heat of formation + Delta-G solvation = -66.764978 kcal Electronic energy + Delta-G solvation = -12530.315507 eV Core-core repulsion = 10296.926391 eV Total energy + Delta-G solvation = -2233.389115 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.82555 -37.03252 -36.29160 -34.61882 -32.07666 -28.24203 -27.41047 -24.56957 -23.28877 -21.78949 -20.42661 -18.50219 -18.28113 -17.38797 -16.60268 -16.31449 -15.66328 -15.31778 -14.93835 -14.30449 -14.18371 -13.72927 -13.41917 -12.87814 -12.71859 -12.48267 -12.42526 -12.21000 -11.75146 -11.45939 -11.38834 -11.26148 -11.13305 -10.65482 -10.55759 -9.38590 -8.20899 -6.32312 1.39644 1.43277 1.51297 2.40719 2.65760 3.11841 3.12590 3.35761 3.95340 4.00362 4.17218 4.23197 4.39672 4.45317 4.57484 4.71654 4.76054 4.78665 4.95595 5.04431 5.11152 5.22216 5.30540 5.50394 5.72552 5.83962 6.09553 6.26854 6.44788 6.83817 6.84942 7.36862 8.90983 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.062641 B = 0.005870 C = 0.005766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.887113 B = 4768.835810 C = 4855.238019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.091 4.091 11 C 0.077 3.923 12 N -0.656 5.656 13 C 0.008 3.992 14 C 0.091 3.909 15 O -0.586 6.586 16 C -0.143 4.143 17 C -0.157 4.157 18 H 0.264 0.736 19 H -0.008 1.008 20 H -0.009 1.009 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.018 0.982 24 H 0.063 0.937 25 H 0.348 0.652 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.397 0.603 29 H 0.092 0.908 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.669 -16.828 1.327 16.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.129 4.129 11 C -0.051 4.051 12 N -0.286 5.286 13 C -0.084 4.084 14 C 0.012 3.988 15 O -0.394 6.394 16 C -0.181 4.181 17 C -0.195 4.195 18 H 0.073 0.927 19 H 0.011 0.989 20 H 0.009 0.991 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.037 0.963 24 H 0.082 0.918 25 H 0.166 0.834 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.247 0.753 29 H 0.110 0.890 30 H 0.132 0.868 31 H 0.136 0.864 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.023 -16.435 0.171 16.560 hybrid contribution -0.632 0.844 1.360 1.721 sum 1.391 -15.591 1.531 15.728 Atomic orbital electron populations 1.70093 1.07811 1.27905 1.51583 1.26005 0.95817 1.03420 0.94581 0.85470 0.78272 0.77915 0.79208 1.19173 1.20578 1.19170 1.21673 0.93527 0.92462 1.50792 0.92354 1.18952 0.94343 0.93001 0.94753 1.21364 0.98054 0.93030 1.00502 1.21780 0.93882 0.90024 0.99452 1.60285 1.21858 1.00188 1.46252 1.21637 1.03726 0.92248 0.90817 1.22090 0.89111 0.99840 0.87781 1.86418 1.37218 1.89146 1.26631 1.23113 0.97277 0.97058 1.00635 1.23126 0.97012 1.03148 0.96169 0.92691 0.98922 0.99109 0.93035 0.93494 0.96336 0.91841 0.83368 0.94113 0.90660 0.75261 0.88986 0.86805 0.86450 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.01 13.29 21.45 0.28 -57.73 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.55 -32.37 9.11 25.60 0.23 -32.14 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.50 4.97 29.85 0.15 1.65 16 10 C -0.09 -4.05 5.46 30.59 0.17 -3.89 16 11 C 0.08 2.88 5.57 86.30 0.48 3.36 16 12 N -0.66 -21.07 6.59 -470.18 -3.10 -24.17 16 13 C 0.01 0.20 2.01 3.53 0.01 0.21 16 14 C 0.09 1.96 7.03 71.98 0.51 2.47 16 15 O -0.59 -12.74 13.19 -148.98 -1.97 -14.71 16 16 C -0.14 -3.11 10.16 30.59 0.31 -2.80 16 17 C -0.16 -3.53 9.52 30.59 0.29 -3.24 16 18 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 19 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 20 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 21 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 22 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 23 H 0.02 0.69 7.93 -2.38 -0.02 0.67 16 24 H 0.06 2.38 7.32 -2.38 -0.02 2.36 16 25 H 0.35 11.31 8.35 -89.70 -0.75 10.56 16 26 H 0.04 0.93 7.93 -2.39 -0.02 0.92 16 27 H 0.08 1.21 8.11 -2.39 -0.02 1.19 16 28 H 0.40 4.77 9.12 -74.06 -0.68 4.10 16 29 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.09 2.30 7.83 -2.38 -0.02 2.28 16 Total: -1.00 -68.05 272.85 -0.47 -68.53 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -0.33 Total: 14.77 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 2.61 Total: -33.95 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -2.81 Total: -81.90 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -1.97 Total: -14.71 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -68.05 -0.47 -68.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126421985.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.761 kcal (2) G-P(sol) polarization free energy of solvation -68.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds