Wall clock time and date at job start Mon Mar 30 2020 01:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99920 * 2 1 4 4 H 1.48504 * 109.47052 * 270.00024 * 3 2 1 5 5 H 1.48490 * 109.47330 * 30.00406 * 3 2 1 6 6 H 1.48499 * 109.46744 * 150.00286 * 3 2 1 7 7 C 1.37879 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99837 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99695 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46690 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.46764 * 180.02562 * 10 9 7 12 12 C 1.46907 * 110.99667 * 175.89801 * 11 10 9 13 13 C 1.52992 * 112.85249 * 290.17660 * 12 11 10 14 14 O 1.42899 * 109.47213 * 305.21599 * 13 12 11 15 15 C 1.53785 * 113.61304 * 158.87072 * 12 11 10 16 16 C 1.53773 * 87.08031 * 220.01952 * 15 12 11 17 17 C 1.53777 * 113.61503 * 61.37591 * 12 11 10 18 18 H 0.97004 * 119.99660 * 359.97438 * 1 2 3 19 19 H 1.08996 * 109.46927 * 60.00245 * 9 7 2 20 20 H 1.08994 * 109.47407 * 299.99829 * 9 7 2 21 21 H 1.08992 * 109.47535 * 59.99933 * 10 9 7 22 22 H 1.09004 * 109.47313 * 299.99578 * 10 9 7 23 23 H 1.00895 * 111.00193 * 299.84957 * 11 10 9 24 24 H 1.08998 * 109.47004 * 65.20753 * 13 12 11 25 25 H 1.08994 * 109.47404 * 185.21288 * 13 12 11 26 26 H 0.96699 * 114.00189 * 180.02562 * 14 13 12 27 27 H 1.09000 * 113.61218 * 334.56811 * 15 12 11 28 28 H 1.08995 * 113.61368 * 105.46387 * 15 12 11 29 29 H 1.08995 * 113.61731 * 270.87998 * 16 15 12 30 30 H 1.09007 * 113.61147 * 139.98221 * 16 15 12 31 31 H 1.09003 * 113.61587 * 254.53044 * 17 12 11 32 32 H 1.09005 * 113.61302 * 25.42914 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5106 -4.9342 -0.0012 12 6 2.4321 -6.0741 -0.0993 13 6 3.1008 -6.1812 -1.4712 14 8 2.0977 -6.2202 -2.4882 15 6 1.8293 -7.3982 0.3993 16 6 3.1998 -7.6931 1.0313 17 6 3.4187 -6.1716 1.0762 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5566 -0.8903 20 1 0.6246 -2.5571 0.8896 21 1 2.8718 -3.6044 0.8894 22 1 2.8718 -3.6044 -0.8906 23 1 0.9235 -5.0132 0.8156 24 1 3.7453 -5.3166 -1.6296 25 1 3.6976 -7.0921 -1.5143 26 1 2.4504 -6.2884 -3.3860 27 1 1.0309 -7.2668 1.1296 28 1 1.5615 -8.0855 -0.4031 29 1 3.8860 -8.2134 0.3632 30 1 3.1359 -8.1543 2.0169 31 1 4.4341 -5.8688 0.8203 32 1 3.0547 -5.7049 1.9916 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129447247.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:04 Heat of formation + Delta-G solvation = -39.060147 kcal Electronic energy + Delta-G solvation = -12958.400249 eV Core-core repulsion = 10726.212506 eV Total energy + Delta-G solvation = -2232.187744 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.65755 -35.80458 -34.39410 -32.38537 -28.95007 -26.89984 -25.67514 -24.20755 -22.23256 -20.31165 -18.41677 -17.12124 -16.37130 -15.75434 -15.28908 -14.40986 -14.03731 -13.70181 -13.34680 -13.03861 -12.34381 -12.22894 -11.94312 -11.39153 -11.18377 -10.93664 -10.87103 -10.55554 -10.41828 -10.12876 -9.92127 -9.61261 -9.28861 -9.05320 -8.30160 -7.59237 -5.94928 -3.97357 3.34426 3.40210 3.43321 4.22883 4.48178 4.68057 4.77963 4.83340 4.93330 5.27857 5.40673 5.45935 5.64912 5.71878 5.82104 5.84867 5.96063 6.13139 6.23457 6.38946 6.45941 6.54090 7.07841 7.60653 7.81314 7.88025 7.94592 8.08142 8.18736 8.50022 9.10372 9.65892 11.16564 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.053744 B = 0.007265 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.858816 B = 3853.234749 C = 3952.142444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.070 3.930 11 N -0.667 5.667 12 C 0.098 3.902 13 C 0.110 3.890 14 O -0.550 6.550 15 C -0.128 4.128 16 C -0.142 4.142 17 C -0.167 4.167 18 H 0.260 0.740 19 H 0.025 0.975 20 H 0.012 0.988 21 H 0.014 0.986 22 H 0.055 0.945 23 H 0.335 0.665 24 H 0.046 0.954 25 H 0.042 0.958 26 H 0.369 0.631 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.785 -13.752 -0.183 15.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.058 4.058 11 N -0.296 5.296 12 C 0.006 3.994 13 C 0.031 3.969 14 O -0.353 6.353 15 C -0.166 4.166 16 C -0.180 4.180 17 C -0.207 4.207 18 H 0.070 0.930 19 H 0.044 0.956 20 H 0.031 0.969 21 H 0.032 0.968 22 H 0.073 0.927 23 H 0.154 0.846 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.214 0.786 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.091 -13.548 -0.338 14.858 hybrid contribution 1.284 0.968 0.472 1.676 sum 7.375 -12.580 0.135 14.583 Atomic orbital electron populations 1.69981 1.06019 1.26493 1.50748 1.25004 0.94829 0.99149 0.95400 0.86603 0.79780 0.83565 0.78088 1.20650 1.21222 1.19980 1.21195 0.92914 0.91126 1.50717 0.92884 1.19046 0.94053 0.90311 0.97689 1.22089 0.96891 0.88539 0.98266 1.60304 1.22012 1.01132 1.46176 1.22186 0.92708 0.92323 0.92229 1.21773 0.89445 0.98660 0.87009 1.86647 1.34415 1.97200 1.17027 1.23041 0.96583 0.96865 1.00117 1.22797 0.97905 0.96401 1.00894 1.23628 1.00695 0.96436 0.99947 0.93034 0.95620 0.96933 0.96808 0.92690 0.84635 0.93601 0.94023 0.78594 0.89983 0.91034 0.90426 0.91537 0.91608 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.60 13.29 55.43 0.74 -26.87 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.72 5.27 -27.88 -0.15 0.57 16 10 C 0.07 1.55 5.23 -3.82 -0.02 1.53 16 11 N -0.67 -12.86 6.28 -99.14 -0.62 -13.49 16 12 C 0.10 1.52 0.91 -130.79 -0.12 1.40 16 13 C 0.11 1.58 6.11 37.15 0.23 1.81 16 14 O -0.55 -8.54 13.53 -35.23 -0.48 -9.02 16 15 C -0.13 -1.69 7.36 -25.92 -0.19 -1.88 16 16 C -0.14 -1.59 7.73 -25.93 -0.20 -1.79 16 17 C -0.17 -2.26 6.41 -25.92 -0.17 -2.42 16 18 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 19 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 20 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 21 H 0.01 0.30 7.50 -51.93 -0.39 -0.09 16 22 H 0.05 1.23 6.85 -51.93 -0.36 0.88 16 23 H 0.34 6.23 8.50 -39.29 -0.33 5.90 16 24 H 0.05 0.69 7.12 -51.93 -0.37 0.32 16 25 H 0.04 0.49 7.32 -51.93 -0.38 0.11 16 26 H 0.37 3.85 9.12 45.56 0.42 4.26 16 27 H 0.08 1.06 7.95 -51.93 -0.41 0.65 16 28 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 29 H 0.08 0.78 7.61 -51.93 -0.40 0.38 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.08 1.20 8.13 -51.93 -0.42 0.77 16 LS Contribution 264.31 15.07 3.98 3.98 Total: -1.00 -32.66 264.31 -6.72 -39.39 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -4.29 Total: 3.68 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -1.03 Total: -14.72 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.11 Total: -40.35 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.48 Total: -9.02 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.66 -6.72 -39.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129447247.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.325 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds