Wall clock time and date at job start Mon Mar 30 2020 01:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 120.00277 * 2 1 4 4 H 1.48509 * 109.47104 * 269.99839 * 3 2 1 5 5 H 1.48495 * 109.47429 * 29.99697 * 3 2 1 6 6 H 1.48495 * 109.47181 * 150.00180 * 3 2 1 7 7 C 1.38816 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99966 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99850 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99794 * 180.02562 * 9 7 2 11 11 H 1.08997 * 108.85449 * 326.43739 * 10 9 7 12 12 C 1.50466 * 108.87775 * 85.00512 * 10 9 7 13 13 C 1.54246 * 108.52212 * 214.92714 * 12 10 9 14 14 C 1.45538 * 112.40665 * 280.00962 * 13 12 10 15 15 C 1.54240 * 112.40209 * 61.93478 * 14 13 12 16 16 C 1.50477 * 108.52154 * 280.01071 * 15 14 13 17 17 C 1.54057 * 112.49606 * 94.15745 * 16 15 14 18 18 H 1.09000 * 108.73514 * 79.08260 * 17 16 15 19 19 O 1.42901 * 108.81356 * 197.42396 * 17 16 15 20 20 H 0.97000 * 119.99355 * 0.02562 * 1 2 3 21 21 H 0.97005 * 120.00302 * 0.02562 * 9 7 2 22 22 H 1.09004 * 109.63181 * 95.21616 * 12 10 9 23 23 H 1.09002 * 109.62802 * 334.63504 * 12 10 9 24 24 H 1.09000 * 108.89299 * 40.76867 * 13 12 10 25 25 H 1.08998 * 108.89527 * 159.25393 * 13 12 10 26 26 H 1.08998 * 108.89422 * 182.68921 * 14 13 12 27 27 H 1.09000 * 108.89571 * 301.18340 * 14 13 12 28 28 H 1.09001 * 109.62627 * 160.30519 * 15 14 13 29 29 H 1.08995 * 109.79339 * 39.82133 * 15 14 13 30 30 H 1.08993 * 108.87669 * 333.37266 * 16 15 14 31 31 H 1.09006 * 108.79526 * 214.87892 * 16 15 14 32 32 H 0.96702 * 114.00013 * 303.28331 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0027 11 1 2.9784 -3.5327 -0.5676 12 6 2.4087 -4.0152 1.4214 13 6 3.7834 -4.7148 1.4245 14 6 3.6933 -6.1167 1.0443 15 6 3.1569 -6.3036 -0.3897 16 6 1.6586 -6.1661 -0.3613 17 6 1.1922 -4.7329 -0.6802 18 1 1.2323 -4.5836 -1.7592 19 8 -0.1603 -4.5808 -0.2447 20 1 -0.4849 0.8401 -0.0004 21 1 0.3554 -2.3881 0.0016 22 1 1.6539 -4.6894 1.8261 23 1 2.4573 -3.1099 2.0264 24 1 4.4425 -4.2009 0.7247 25 1 4.2117 -4.6470 2.4245 26 1 4.6844 -6.5651 1.1117 27 1 3.0281 -6.6289 1.7395 28 1 3.4267 -7.2944 -0.7553 29 1 3.5820 -5.5434 -1.0448 30 1 1.2979 -6.4422 0.6294 31 1 1.2294 -6.8482 -1.0952 32 1 -0.7722 -5.2227 -0.6303 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130706254.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:15 Heat of formation + Delta-G solvation = -77.381594 kcal Electronic energy + Delta-G solvation = -13502.430544 eV Core-core repulsion = 11268.581057 eV Total energy + Delta-G solvation = -2233.849486 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.30522 -36.86075 -36.08891 -33.38186 -32.25270 -30.07176 -26.25449 -25.19862 -23.92291 -21.38718 -20.41568 -19.11934 -17.92447 -17.21166 -16.21581 -16.01113 -15.31745 -14.82002 -14.77152 -14.32199 -13.89063 -13.58403 -13.39622 -13.00049 -12.77762 -12.62057 -12.15175 -11.97774 -11.86525 -11.48090 -11.43304 -11.16971 -11.07731 -10.89582 -10.54698 -8.94748 -7.90432 -5.18421 1.45061 1.47888 1.56235 2.56774 3.35763 3.48963 3.75287 3.82094 4.01958 4.23622 4.32397 4.38048 4.45952 4.56574 4.63245 4.86928 4.97877 5.08055 5.19696 5.25232 5.28949 5.35771 5.40150 5.48833 5.52514 5.60408 5.75371 6.31752 7.04134 7.37826 8.20636 8.44337 9.33475 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.046591 B = 0.010258 C = 0.008971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.824858 B = 2729.039094 C = 3120.435447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.083 4.083 3 Si 0.974 3.026 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.238 4.238 8 H 0.073 0.927 9 N -0.738 5.738 10 C 0.179 3.821 11 H 0.046 0.954 12 C -0.123 4.123 13 C -0.113 4.113 14 C -0.112 4.112 15 C -0.115 4.115 16 C -0.137 4.137 17 C 0.105 3.895 18 H 0.038 0.962 19 O -0.579 6.579 20 H 0.249 0.751 21 H 0.378 0.622 22 H 0.056 0.944 23 H 0.034 0.966 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.281 -14.756 -0.425 16.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.274 4.274 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.379 5.379 10 C 0.071 3.929 11 H 0.064 0.936 12 C -0.163 4.163 13 C -0.151 4.151 14 C -0.149 4.149 15 C -0.153 4.153 16 C -0.175 4.175 17 C 0.045 3.955 18 H 0.056 0.944 19 O -0.386 6.386 20 H 0.058 0.942 21 H 0.211 0.789 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 6.697 -14.158 -0.092 15.662 hybrid contribution -0.500 0.874 -0.292 1.049 sum 6.197 -13.284 -0.383 14.663 Atomic orbital electron populations 1.69880 1.06701 1.25752 1.59890 1.25608 0.96409 1.01148 1.04282 0.85130 0.77660 0.79494 0.77458 1.21323 1.22254 1.19388 1.19680 0.91294 0.85501 1.40507 0.90859 1.42696 1.06079 1.00599 1.88524 1.20390 0.93249 0.84786 0.94495 0.93648 1.21926 0.97232 0.98915 0.98201 1.20443 0.96058 0.97116 1.01438 1.20467 1.02061 0.95682 0.96696 1.21304 0.94361 1.02563 0.97055 1.22004 0.97796 0.94701 1.03009 1.22606 0.82028 0.94673 0.96176 0.94404 1.86593 1.19043 1.60308 1.72696 0.94236 0.78945 0.92569 0.94759 0.93039 0.92060 0.90580 0.91864 0.89335 0.92503 0.91217 0.90035 0.76623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.89 13.06 21.65 0.28 -62.60 16 2 C -0.08 -5.00 5.50 84.86 0.47 -4.54 16 3 Si 0.97 48.10 29.55 68.60 2.03 50.13 16 4 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 5 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 6 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.24 -14.00 9.75 84.03 0.82 -13.18 16 8 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.74 -40.48 4.92 -325.12 -1.60 -42.08 16 10 C 0.18 7.55 2.09 44.53 0.09 7.64 16 11 H 0.05 1.93 6.54 -2.39 -0.02 1.92 16 12 C -0.12 -4.71 5.27 30.20 0.16 -4.55 16 13 C -0.11 -3.26 5.26 28.74 0.15 -3.11 16 14 C -0.11 -2.49 5.26 28.74 0.15 -2.34 16 15 C -0.12 -2.50 5.60 30.20 0.17 -2.33 16 16 C -0.14 -3.30 4.88 30.14 0.15 -3.16 16 17 C 0.10 3.59 3.24 31.31 0.10 3.69 16 18 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 19 O -0.58 -21.30 11.94 -148.98 -1.78 -23.08 16 20 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 21 H 0.38 22.73 6.66 -92.70 -0.62 22.11 16 22 H 0.06 2.10 6.98 -2.39 -0.02 2.08 16 23 H 0.03 1.55 7.81 -2.39 -0.02 1.53 16 24 H 0.05 1.55 7.47 -2.39 -0.02 1.53 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.35 7.47 -2.39 -0.02 1.34 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.38 6.99 -2.39 -0.02 1.37 16 30 H 0.07 1.72 6.63 -2.39 -0.02 1.70 16 31 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.39 9.76 9.04 -74.06 -0.67 9.09 16 Total: -1.00 -70.60 250.09 1.01 -69.59 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: -0.18 Total: 29.91 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 2.26 Total: -21.87 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -1.32 Total: -104.69 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -1.78 Total: -23.08 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -70.60 1.01 -69.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130706254.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.792 kcal (2) G-P(sol) polarization free energy of solvation -70.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds