Wall clock time and date at job start Mon Mar 30 2020 01:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00100 * 2 1 4 4 H 1.48494 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47038 * 300.00161 * 3 2 1 6 6 H 1.48505 * 109.46960 * 59.99927 * 3 2 1 7 7 C 1.38816 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99683 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99713 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99940 * 179.97438 * 9 7 2 11 11 H 1.09003 * 108.84927 * 36.45174 * 10 9 7 12 12 C 1.54056 * 108.88093 * 277.98396 * 10 9 7 13 13 C 1.54069 * 112.81521 * 197.50569 * 12 10 9 14 14 C 1.50546 * 112.41623 * 318.27597 * 13 12 10 15 15 C 1.54245 * 108.48390 * 94.26691 * 14 13 12 16 16 C 1.45542 * 112.32700 * 279.88442 * 15 14 13 17 17 C 1.50476 * 108.87431 * 155.00304 * 10 9 7 18 18 H 1.09002 * 109.62685 * 95.23002 * 17 10 9 19 19 O 1.42891 * 109.79115 * 334.73798 * 17 10 9 20 20 H 0.96996 * 119.99798 * 359.97438 * 1 2 3 21 21 H 0.96992 * 120.00410 * 0.02562 * 9 7 2 22 22 H 1.09000 * 108.81295 * 318.36246 * 12 10 9 23 23 H 1.09001 * 108.81915 * 76.75339 * 12 10 9 24 24 H 1.09000 * 108.87428 * 79.06142 * 13 12 10 25 25 H 1.09006 * 108.87441 * 197.60351 * 13 12 10 26 26 H 1.09000 * 109.72188 * 334.52919 * 14 13 12 27 27 H 1.08999 * 109.57838 * 213.92704 * 14 13 12 28 28 H 1.09002 * 108.89744 * 159.17865 * 15 14 13 29 29 H 1.09003 * 108.89355 * 40.58995 * 15 14 13 30 30 H 1.08997 * 108.89204 * 182.73719 * 16 15 14 31 31 H 1.09001 * 108.89537 * 301.32910 * 16 15 14 32 32 H 0.96702 * 114.00126 * 180.87296 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.9533 -3.5472 0.6106 12 6 2.4816 -3.9867 -1.4457 13 6 2.8677 -5.4665 -1.6317 14 6 3.6901 -5.9937 -0.4862 15 6 2.7421 -6.6673 0.5270 16 6 2.0786 -5.7014 1.3901 17 6 1.1844 -4.7239 0.6002 18 1 0.6649 -5.2621 -0.1927 19 8 0.2299 -4.1279 1.4809 20 1 -0.4849 0.8400 0.0004 21 1 0.3557 -2.3881 -0.0005 22 1 1.6552 -3.7520 -2.1166 23 1 3.3370 -3.3657 -1.7118 24 1 1.9577 -6.0605 -1.7164 25 1 3.4416 -5.5681 -2.5529 26 1 4.2177 -5.1712 -0.0031 27 1 4.4080 -6.7247 -0.8580 28 1 3.3179 -7.3561 1.1453 29 1 1.9856 -7.2314 -0.0185 30 1 1.4631 -6.2377 2.1124 31 1 2.8353 -5.1297 1.9273 32 1 -0.3569 -4.7634 1.9132 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130706478.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:17 Heat of formation + Delta-G solvation = -50.468544 kcal Electronic energy + Delta-G solvation = -13496.106564 eV Core-core repulsion = 11263.424115 eV Total energy + Delta-G solvation = -2232.682449 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.99616 -35.35024 -34.22235 -31.76961 -30.77082 -28.28210 -24.52234 -23.72123 -22.24616 -20.46167 -18.59403 -17.12820 -16.75691 -15.40322 -14.35561 -14.16017 -13.97351 -13.79665 -13.24746 -12.87859 -12.58158 -12.13696 -11.42029 -11.29455 -11.06839 -10.78838 -10.71540 -10.45112 -10.24955 -10.20235 -9.99951 -9.65262 -9.42680 -9.20299 -8.73745 -6.75891 -5.61649 -2.88166 3.50437 3.55423 3.57973 4.66728 4.76551 4.88578 4.98004 5.26141 5.47483 5.54619 5.63125 5.68726 5.71833 5.86967 5.96418 6.01834 6.26587 6.33409 6.39220 6.42665 6.52486 6.55704 6.66961 6.77032 6.98451 7.17903 7.80658 8.27898 8.58325 9.68879 10.31129 10.67946 11.61130 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.047719 B = 0.010057 C = 0.009089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.627630 B = 2783.441821 C = 3079.959354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.017 4.017 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.232 4.232 8 H 0.067 0.933 9 N -0.712 5.712 10 C 0.184 3.816 11 H 0.044 0.956 12 C -0.134 4.134 13 C -0.119 4.119 14 C -0.120 4.120 15 C -0.112 4.112 16 C -0.148 4.148 17 C 0.105 3.895 18 H 0.047 0.953 19 O -0.540 6.540 20 H 0.252 0.748 21 H 0.391 0.609 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.282 -13.599 0.089 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.212 4.212 3 Si 0.734 3.266 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.364 4.364 8 H 0.085 0.915 9 N -0.353 5.353 10 C 0.073 3.927 11 H 0.062 0.938 12 C -0.175 4.175 13 C -0.158 4.158 14 C -0.157 4.157 15 C -0.150 4.150 16 C -0.187 4.187 17 C 0.045 3.955 18 H 0.065 0.935 19 O -0.342 6.342 20 H 0.062 0.938 21 H 0.226 0.774 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.703 -12.887 -0.091 13.719 hybrid contribution -0.047 0.399 0.141 0.426 sum 4.656 -12.488 0.050 13.328 Atomic orbital electron populations 1.69698 1.05006 1.25101 1.58120 1.24717 0.95472 0.97452 1.03580 0.86173 0.78746 0.84569 0.77085 1.20692 1.22049 1.22013 1.19305 0.90820 0.84397 1.41846 0.91491 1.42288 1.06193 0.99051 1.87786 1.20044 0.93646 0.86334 0.92639 0.93787 1.22718 1.01274 0.93482 0.99992 1.21409 0.99171 0.97580 0.97592 1.21393 0.97746 0.99963 0.96604 1.20415 0.98609 0.97967 0.97993 1.21209 1.00358 0.98150 0.98943 1.21777 0.89520 0.93564 0.90630 0.93504 1.86823 1.48544 1.36385 1.62438 0.93818 0.77438 0.92208 0.92489 0.92743 0.93066 0.91291 0.92526 0.92640 0.92444 0.92463 0.91445 0.79578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.47 13.06 55.49 0.72 -28.74 16 2 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 3 Si 0.90 23.28 29.55 -169.99 -5.02 18.25 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 6 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 7 C -0.23 -6.78 9.88 -15.06 -0.15 -6.93 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -19.09 4.59 -54.11 -0.25 -19.33 16 10 C 0.18 3.87 2.20 -68.64 -0.15 3.72 16 11 H 0.04 0.97 6.55 -51.93 -0.34 0.63 16 12 C -0.13 -2.49 5.38 -25.62 -0.14 -2.63 16 13 C -0.12 -1.70 5.32 -27.40 -0.15 -1.84 16 14 C -0.12 -1.54 5.61 -27.31 -0.15 -1.69 16 15 C -0.11 -1.35 5.27 -29.60 -0.16 -1.51 16 16 C -0.15 -2.09 4.93 -29.60 -0.15 -2.24 16 17 C 0.10 1.84 3.00 -27.34 -0.08 1.76 16 18 H 0.05 0.78 6.98 -51.93 -0.36 0.42 16 19 O -0.54 -10.49 11.83 -35.23 -0.42 -10.90 16 20 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 21 H 0.39 11.32 6.96 -40.82 -0.28 11.03 16 22 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 23 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 24 H 0.05 0.74 6.63 -51.93 -0.34 0.39 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.97 6.96 -51.93 -0.36 0.61 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.65 7.46 -51.93 -0.39 0.26 16 30 H 0.06 0.70 8.06 -51.93 -0.42 0.28 16 31 H 0.07 1.04 7.46 -51.93 -0.39 0.65 16 32 H 0.36 4.97 9.03 45.56 0.41 5.38 16 LS Contribution 250.34 15.07 3.77 3.77 Total: -1.00 -32.76 250.34 -6.54 -39.31 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -4.13 Total: 9.60 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -1.22 Total: -11.95 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.48 Total: -48.08 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.42 Total: -10.90 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.02 Total: 18.25 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.76 -6.54 -39.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130706478.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.164 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds