Wall clock time and date at job start Mon Mar 30 2020 01:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99863 * 2 1 4 4 H 1.48499 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47076 * 300.00180 * 3 2 1 6 6 H 1.48503 * 109.47055 * 59.99809 * 3 2 1 7 7 C 1.38813 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99907 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00099 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99802 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.78956 * 325.48233 * 10 9 7 12 12 C 1.50398 * 109.69337 * 86.04916 * 10 9 7 13 13 C 1.54070 * 112.53626 * 213.97452 * 12 10 9 14 14 C 1.54064 * 112.73517 * 318.11518 * 13 12 10 15 15 C 1.50481 * 112.49652 * 318.33734 * 14 13 12 16 16 C 1.54243 * 108.51755 * 94.15008 * 15 14 13 17 17 C 1.45545 * 112.40468 * 280.01293 * 16 15 14 18 18 H 1.09001 * 108.89961 * 301.18402 * 17 16 15 19 19 O 1.42904 * 108.89144 * 182.59227 * 17 16 15 20 20 H 0.96994 * 120.00371 * 0.02562 * 1 2 3 21 21 H 0.96997 * 120.00146 * 359.97438 * 9 7 2 22 22 H 1.08998 * 108.94931 * 93.12583 * 12 10 9 23 23 H 1.09005 * 108.77228 * 334.69877 * 12 10 9 24 24 H 1.09002 * 108.81528 * 197.30800 * 13 12 10 25 25 H 1.08996 * 108.81060 * 78.91992 * 13 12 10 26 26 H 1.09003 * 108.87436 * 79.10685 * 14 13 12 27 27 H 1.08990 * 108.88001 * 197.65685 * 14 13 12 28 28 H 1.08996 * 109.62659 * 213.86086 * 15 14 13 29 29 H 1.08999 * 109.62680 * 334.44452 * 15 14 13 30 30 H 1.09001 * 108.89523 * 40.76487 * 16 15 14 31 31 H 1.08993 * 108.89378 * 159.25987 * 16 15 14 32 32 H 0.96699 * 113.99753 * 60.00415 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 1 2.9750 -3.5535 -0.5820 12 6 2.3950 -4.0475 1.4111 13 6 3.7465 -4.7799 1.5150 14 6 3.9567 -5.8048 0.3841 15 6 2.7123 -6.5965 0.0859 16 6 1.9574 -5.9062 -1.0686 17 6 1.1774 -4.7636 -0.6166 18 1 0.4595 -5.0999 0.1314 19 8 0.4649 -4.2203 -1.7298 20 1 -0.4850 0.8400 -0.0004 21 1 0.3556 -2.3881 -0.0016 22 1 1.6103 -4.6995 1.7947 23 1 2.4339 -3.1471 2.0243 24 1 3.7926 -5.2986 2.4725 25 1 4.5492 -4.0435 1.4757 26 1 4.2630 -5.2761 -0.5186 27 1 4.7498 -6.4935 0.6752 28 1 2.9848 -7.6098 -0.2089 29 1 2.0774 -6.6279 0.9713 30 1 2.6805 -5.5685 -1.8111 31 1 1.2875 -6.6290 -1.5343 32 1 -0.1464 -4.8426 -2.1471 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130706676.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:18 Heat of formation + Delta-G solvation = -76.083220 kcal Electronic energy + Delta-G solvation = -13492.123988 eV Core-core repulsion = 11258.330803 eV Total energy + Delta-G solvation = -2233.793185 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.43280 -36.78372 -36.04627 -33.40789 -32.12835 -30.22457 -26.33851 -25.02805 -24.06250 -21.64465 -20.08151 -19.10341 -18.22858 -17.18060 -16.16261 -15.73686 -15.57112 -14.83796 -14.57808 -14.56960 -14.17238 -13.43715 -13.04281 -12.95768 -12.81146 -12.50930 -12.30815 -12.07788 -11.83612 -11.47375 -11.33393 -11.29539 -11.07265 -10.88731 -10.66930 -8.93837 -7.90477 -5.17215 1.44775 1.46748 1.56436 2.57010 3.35382 3.43722 3.69597 3.90099 4.12559 4.28172 4.31385 4.32736 4.42855 4.46854 4.60524 4.89397 4.95415 5.05034 5.10139 5.20536 5.28000 5.37091 5.40517 5.46334 5.51142 5.59912 5.65686 6.31943 7.07380 7.37077 8.17805 8.40669 9.33737 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.045083 B = 0.010399 C = 0.009086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.926068 B = 2691.804420 C = 3080.857298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.082 4.082 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.232 4.232 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.183 3.817 11 H 0.035 0.965 12 C -0.130 4.130 13 C -0.109 4.109 14 C -0.119 4.119 15 C -0.107 4.107 16 C -0.143 4.143 17 C 0.104 3.896 18 H 0.045 0.955 19 O -0.580 6.580 20 H 0.249 0.751 21 H 0.372 0.628 22 H 0.059 0.941 23 H 0.040 0.960 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.755 -15.051 0.568 16.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.273 4.273 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.365 4.365 8 H 0.088 0.912 9 N -0.367 5.367 10 C 0.074 3.926 11 H 0.053 0.947 12 C -0.170 4.170 13 C -0.148 4.148 14 C -0.156 4.156 15 C -0.145 4.145 16 C -0.181 4.181 17 C 0.045 3.955 18 H 0.063 0.937 19 O -0.387 6.387 20 H 0.058 0.942 21 H 0.204 0.796 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 6.275 -14.413 0.710 15.736 hybrid contribution -0.539 0.840 -0.179 1.014 sum 5.736 -13.573 0.531 14.745 Atomic orbital electron populations 1.69852 1.06593 1.25649 1.60076 1.25552 0.96420 1.00990 1.04367 0.85089 0.78181 0.79977 0.76665 1.19110 1.22184 1.21885 1.19632 0.91140 0.85496 1.40190 0.91197 1.42430 1.05444 1.00592 1.88259 1.20160 0.93433 0.84831 0.94132 0.94702 1.21973 0.98010 0.99254 0.97807 1.21857 0.95711 0.97621 0.99569 1.21370 0.98666 0.97464 0.98138 1.21249 0.96458 0.99086 0.97695 1.21177 1.00526 0.96836 0.99554 1.21014 0.93433 0.93271 0.87753 0.93677 1.86785 1.59988 1.43966 1.47955 0.94245 0.79604 0.92226 0.94154 0.90802 0.93433 0.93357 0.90176 0.89285 0.91310 0.92339 0.89841 0.77132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.65 13.06 21.65 0.28 -62.36 16 2 C -0.08 -4.95 5.50 84.86 0.47 -4.49 16 3 Si 0.97 48.47 29.55 68.60 2.03 50.50 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 6 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 7 C -0.23 -13.79 9.83 84.03 0.83 -12.96 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.73 -39.79 4.56 -324.94 -1.48 -41.27 16 10 C 0.18 7.73 2.28 44.57 0.10 7.83 16 11 H 0.03 1.56 6.92 -2.39 -0.02 1.55 16 12 C -0.13 -4.73 5.02 30.12 0.15 -4.58 16 13 C -0.11 -3.04 5.86 31.32 0.18 -2.86 16 14 C -0.12 -2.75 5.31 30.14 0.16 -2.59 16 15 C -0.11 -2.23 5.61 30.20 0.17 -2.06 16 16 C -0.14 -3.61 4.77 28.74 0.14 -3.47 16 17 C 0.10 3.57 2.67 28.74 0.08 3.65 16 18 H 0.05 1.48 7.47 -2.39 -0.02 1.47 16 19 O -0.58 -22.29 12.43 -148.98 -1.85 -24.14 16 20 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 21 H 0.37 22.11 7.53 -92.71 -0.70 21.41 16 22 H 0.06 1.97 6.62 -2.39 -0.02 1.96 16 23 H 0.04 1.72 7.84 -2.38 -0.02 1.71 16 24 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.05 1.26 6.63 -2.39 -0.02 1.24 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.44 6.97 -2.39 -0.02 1.42 16 30 H 0.06 1.62 7.47 -2.39 -0.02 1.60 16 31 H 0.08 1.67 8.13 -2.39 -0.02 1.65 16 32 H 0.38 10.17 9.04 -74.06 -0.67 9.50 16 Total: -1.00 -71.14 251.09 0.99 -70.15 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.26 Total: 28.66 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: 2.27 Total: -21.53 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -1.20 Total: -103.63 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -1.85 Total: -24.14 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.50 kcal Total: -71.14 0.99 -70.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130706676.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.936 kcal (2) G-P(sol) polarization free energy of solvation -71.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds