Wall clock time and date at job start Mon Mar 30 2020 01:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86795 * 120.00066 * 2 1 4 4 H 1.48504 * 109.46960 * 240.00218 * 3 2 1 5 5 H 1.48500 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47338 * 120.00412 * 3 2 1 7 7 C 1.38644 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00132 * 180.02562 * 7 2 1 9 9 O 1.34926 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.42898 * 117.00004 * 180.02562 * 9 7 2 11 11 H 1.08993 * 108.76824 * 331.49042 * 10 9 7 12 12 C 1.54066 * 108.87572 * 90.00187 * 10 9 7 13 13 C 1.54060 * 112.82103 * 162.49892 * 12 10 9 14 14 C 1.50471 * 112.49461 * 41.71236 * 13 12 10 15 15 C 1.54241 * 108.52485 * 265.85190 * 14 13 12 16 16 C 1.45542 * 112.40592 * 79.98696 * 15 14 13 17 17 C 1.50472 * 108.87972 * 212.97605 * 10 9 7 18 18 H 1.08996 * 109.63437 * 264.78536 * 17 10 9 19 19 N 1.46903 * 109.62338 * 25.16675 * 17 10 9 20 20 H 0.96996 * 120.00403 * 0.02562 * 1 2 3 21 21 H 1.09001 * 108.81117 * 283.35731 * 12 10 9 22 22 H 1.09002 * 108.81336 * 41.63620 * 12 10 9 23 23 H 1.09000 * 108.88056 * 162.49557 * 13 12 10 24 24 H 1.08998 * 108.87772 * 280.93888 * 13 12 10 25 25 H 1.09005 * 109.62832 * 146.14343 * 14 13 12 26 26 H 1.09001 * 109.79051 * 25.66377 * 14 13 12 27 27 H 1.08992 * 108.89424 * 319.23073 * 15 14 13 28 28 H 1.09001 * 108.89300 * 200.73875 * 15 14 13 29 29 H 1.08994 * 108.89630 * 177.31154 * 16 15 14 30 30 H 1.08999 * 108.89505 * 58.81568 * 16 15 14 31 31 H 1.00904 * 110.99578 * 179.97438 * 19 17 10 32 32 H 1.00900 * 111.00364 * 303.94947 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1035 1.6963 -1.2126 5 1 1.2848 2.7464 0.0006 6 1 3.1036 1.6963 1.2124 7 6 2.0090 -1.2007 -0.0005 8 1 3.0890 -1.2007 -0.0001 9 8 1.3344 -2.3692 -0.0005 10 6 2.1126 -3.5676 -0.0005 11 1 3.0642 -3.3678 -0.4931 12 6 2.3841 -3.9857 1.4573 13 6 2.8291 -5.4551 1.5845 14 6 3.8065 -5.8555 0.5128 15 6 3.0222 -6.4930 -0.6523 16 6 2.4094 -5.4972 -1.5191 17 6 1.3761 -4.6265 -0.7755 18 1 0.7995 -5.2475 -0.0900 19 7 0.4727 -3.9905 -1.7438 20 1 -0.4850 0.8400 -0.0004 21 1 3.1651 -3.3452 1.8670 22 1 1.4737 -3.8425 2.0393 23 1 3.2956 -5.5992 2.5590 24 1 1.9505 -6.0967 1.5180 25 1 4.5157 -6.5785 0.9157 26 1 4.3430 -4.9765 0.1555 27 1 2.2410 -7.1335 -0.2432 28 1 3.7037 -7.1044 -1.2438 29 1 1.9130 -6.0060 -2.3453 30 1 3.1899 -4.8519 -1.9222 31 1 -0.0323 -4.6832 -2.2760 32 1 -0.1613 -3.3549 -1.2834 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131208542.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:13 Heat of formation + Delta-G solvation = -48.004907 kcal Electronic energy + Delta-G solvation = -13548.632797 eV Core-core repulsion = 11316.057179 eV Total energy + Delta-G solvation = -2232.575618 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.85888 -35.61895 -33.35294 -31.89580 -30.76115 -28.20691 -24.74055 -23.43529 -22.95727 -20.16552 -18.58667 -17.42490 -15.72737 -15.34744 -14.65347 -14.22888 -13.92976 -13.49191 -13.38054 -12.86336 -12.60364 -12.17551 -11.65123 -11.33758 -11.01314 -11.00138 -10.68412 -10.47851 -10.30188 -10.14364 -10.07375 -9.68392 -9.28650 -8.97884 -7.84893 -7.74506 -5.84825 -3.44872 3.37628 3.39867 3.42269 4.39134 4.91215 4.98150 5.18710 5.40875 5.45511 5.53002 5.63063 5.72478 5.79205 5.92097 5.97511 6.08063 6.32061 6.39797 6.41411 6.47385 6.53629 6.60799 6.71102 6.81892 7.06098 7.11146 7.56498 8.03231 8.40078 8.55793 9.59814 10.28984 11.36537 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.047449 B = 0.010265 C = 0.009400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.966217 B = 2727.093003 C = 2978.075440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.021 3.979 3 Si 0.920 3.080 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.346 4.346 8 H 0.058 0.942 9 O -0.281 6.281 10 C 0.106 3.894 11 H 0.039 0.961 12 C -0.138 4.138 13 C -0.115 4.115 14 C -0.119 4.119 15 C -0.113 4.113 16 C -0.112 4.112 17 C 0.105 3.895 18 H 0.026 0.974 19 N -0.832 5.832 20 H 0.256 0.744 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.319 0.681 32 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.753 -11.026 0.146 12.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.176 4.176 3 Si 0.748 3.252 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.425 4.425 8 H 0.075 0.925 9 O -0.195 6.195 10 C 0.046 3.954 11 H 0.057 0.943 12 C -0.176 4.176 13 C -0.153 4.153 14 C -0.157 4.157 15 C -0.151 4.151 16 C -0.150 4.150 17 C -0.007 4.007 18 H 0.044 0.956 19 N -0.365 5.365 20 H 0.066 0.934 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.070 -10.576 -0.156 11.729 hybrid contribution 0.007 0.384 0.605 0.717 sum 5.077 -10.192 0.449 11.395 Atomic orbital electron populations 1.69975 1.05219 1.25671 1.52684 1.24856 0.95612 0.97425 0.99707 0.86117 0.78560 0.82286 0.78233 1.20529 1.21041 1.20669 1.20757 0.89830 0.82840 1.49119 0.92473 1.85554 1.31519 1.10117 1.92312 1.21559 0.94187 0.87768 0.91915 0.94263 1.22501 1.01356 0.94288 0.99494 1.21307 0.98614 0.97311 0.98025 1.21371 0.97846 1.00453 0.96021 1.20470 0.99185 0.98170 0.97283 1.20481 0.98840 0.97551 0.98118 1.21040 0.93710 0.93799 0.92141 0.95606 1.58472 1.26978 1.21525 1.29541 0.93448 0.92563 0.91930 0.92976 0.92607 0.92535 0.91445 0.92594 0.92653 0.92466 0.91734 0.87042 0.81714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.85 13.67 55.48 0.76 -27.09 16 2 C 0.02 0.63 5.49 -17.51 -0.10 0.54 16 3 Si 0.92 22.57 29.55 -169.99 -5.02 17.54 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.35 -10.20 9.76 30.88 0.30 -9.89 16 8 H 0.06 1.62 7.61 -52.49 -0.40 1.22 16 9 O -0.28 -7.84 7.63 -16.50 -0.13 -7.97 16 10 C 0.11 2.33 2.08 -27.44 -0.06 2.27 16 11 H 0.04 0.90 6.22 -51.93 -0.32 0.58 16 12 C -0.14 -2.68 5.45 -25.62 -0.14 -2.82 16 13 C -0.11 -1.73 5.31 -27.44 -0.15 -1.87 16 14 C -0.12 -1.64 5.60 -27.34 -0.15 -1.79 16 15 C -0.11 -1.49 5.26 -29.60 -0.16 -1.65 16 16 C -0.11 -1.75 4.90 -29.60 -0.15 -1.90 16 17 C 0.11 1.99 2.87 -68.33 -0.20 1.79 16 18 H 0.03 0.48 6.98 -51.93 -0.36 0.12 16 19 N -0.83 -16.75 8.94 -5.19 -0.05 -16.80 16 20 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 21 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 22 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.81 6.63 -51.93 -0.34 0.46 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 1.01 7.00 -51.93 -0.36 0.65 16 27 H 0.06 0.70 7.47 -51.93 -0.39 0.31 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.82 8.05 -51.93 -0.42 0.40 16 30 H 0.06 1.09 7.47 -51.93 -0.39 0.70 16 31 H 0.32 5.28 8.99 -39.29 -0.35 4.92 16 32 H 0.37 8.40 7.76 -39.29 -0.30 8.09 16 LS Contribution 251.05 15.07 3.78 3.78 Total: -1.00 -31.63 251.05 -6.33 -37.96 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -4.89 Total: 7.89 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -0.79 Total: -15.32 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.71 Total: -43.89 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.13 Total: -7.97 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.63 -6.33 -37.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131208542.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.042 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds