Wall clock time and date at job start Mon Mar 30 2020 01:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99996 * 2 1 4 4 H 1.48503 * 109.47035 * 239.99936 * 3 2 1 5 5 H 1.48499 * 109.46955 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47237 * 120.00172 * 3 2 1 7 7 C 1.37878 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99451 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00315 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47147 * 179.97438 * 9 7 2 11 11 O 1.42902 * 109.47061 * 180.02562 * 10 9 7 12 12 C 1.42895 * 114.00166 * 179.97438 * 11 10 9 13 13 H 1.09009 * 110.01619 * 29.93790 * 12 11 10 14 14 C 1.54264 * 110.03609 * 268.54797 * 12 11 10 15 15 C 1.54892 * 104.19651 * 217.05759 * 14 12 11 16 16 C 1.54891 * 102.74959 * 37.93955 * 15 14 12 17 17 C 1.54224 * 110.06469 * 151.31234 * 12 11 10 18 18 H 1.09004 * 110.08793 * 238.52274 * 17 12 11 19 19 N 1.46901 * 110.14194 * 0.06116 * 17 12 11 20 20 H 0.97003 * 120.00111 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46816 * 60.00014 * 9 7 2 22 22 H 1.08999 * 109.46724 * 300.00361 * 9 7 2 23 23 H 1.08998 * 109.47224 * 60.00297 * 10 9 7 24 24 H 1.08999 * 109.47630 * 299.99839 * 10 9 7 25 25 H 1.08993 * 110.49070 * 98.37582 * 14 12 11 26 26 H 1.09001 * 110.59511 * 335.78950 * 14 12 11 27 27 H 1.09000 * 110.75513 * 279.62815 * 15 14 12 28 28 H 1.09002 * 110.75596 * 156.25525 * 15 14 12 29 29 H 1.09002 * 110.48740 * 80.73781 * 16 15 14 30 30 H 1.08998 * 110.48604 * 203.24665 * 16 15 14 31 31 H 1.00907 * 110.99411 * 178.48221 * 19 17 12 32 32 H 1.00899 * 111.00030 * 302.43006 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 8 1.5308 -4.8996 -0.0024 12 6 2.3707 -6.0557 -0.0042 13 1 3.3085 -5.8363 0.5064 14 6 2.6505 -6.5034 -1.4537 15 6 2.6580 -8.0505 -1.3786 16 6 1.5256 -8.3491 -0.3648 17 6 1.6542 -7.2314 0.6906 18 1 2.2451 -7.5827 1.5365 19 7 0.3215 -6.8135 1.1461 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5570 0.8897 23 1 2.8726 -3.6047 0.8877 24 1 2.8713 -3.6040 -0.8922 25 1 3.6198 -6.1330 -1.7871 26 1 1.8609 -6.1577 -2.1210 27 1 3.6156 -8.4145 -1.0063 28 1 2.4300 -8.4856 -2.3516 29 1 0.5529 -8.3014 -0.8544 30 1 1.6728 -9.3264 0.0946 31 1 -0.1689 -7.5807 1.5811 32 1 0.3840 -6.0237 1.7708 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131303582.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:52 Heat of formation + Delta-G solvation = -65.393071 kcal Electronic energy + Delta-G solvation = -12846.799697 eV Core-core repulsion = 10613.470072 eV Total energy + Delta-G solvation = -2233.329625 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.79578 -35.78659 -33.06266 -32.44441 -29.88809 -27.44691 -26.05888 -24.36249 -20.89301 -20.65302 -19.53445 -16.73727 -16.11604 -15.41220 -15.13121 -14.61716 -14.44029 -14.01614 -13.81722 -12.71957 -12.40050 -11.97235 -11.56123 -11.37996 -11.01846 -10.97547 -10.90630 -10.70859 -10.52162 -10.17623 -10.13505 -9.41963 -9.15631 -8.77943 -8.33969 -8.27992 -5.99203 -4.02807 3.34021 3.38194 3.40401 4.25970 4.50604 4.67829 4.73381 4.87794 5.21027 5.36440 5.41740 5.51438 5.59938 5.72510 5.93889 6.00967 6.02606 6.13465 6.26918 6.33975 6.39967 6.49192 6.97058 7.38702 7.65551 7.77173 7.86390 7.92091 8.23172 8.42101 9.03983 9.60526 11.12326 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.068960 B = 0.006647 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.933708 B = 4211.552804 C = 4432.336892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.028 3.972 10 C 0.065 3.935 11 O -0.362 6.362 12 C 0.087 3.913 13 H 0.053 0.947 14 C -0.144 4.144 15 C -0.121 4.121 16 C -0.118 4.118 17 C 0.090 3.910 18 H 0.034 0.966 19 N -0.826 5.826 20 H 0.262 0.738 21 H 0.024 0.976 22 H 0.024 0.976 23 H 0.030 0.970 24 H 0.031 0.969 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.330 0.670 32 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.705 -14.630 0.522 15.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.011 4.011 11 O -0.280 6.280 12 C 0.027 3.973 13 H 0.071 0.929 14 C -0.182 4.182 15 C -0.159 4.159 16 C -0.156 4.156 17 C -0.022 4.022 18 H 0.052 0.948 19 N -0.357 5.357 20 H 0.072 0.928 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.141 0.859 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.201 -14.344 -0.240 14.948 hybrid contribution 1.191 0.747 0.967 1.707 sum 5.392 -13.597 0.727 14.645 Atomic orbital electron populations 1.69975 1.06044 1.26799 1.50132 1.24989 0.94860 0.99211 0.95189 0.86607 0.79528 0.82949 0.78601 1.20206 1.21178 1.20228 1.21043 0.92913 0.90736 1.51609 0.92751 1.19020 0.94154 0.89311 0.98414 1.22912 0.96385 0.84050 0.97740 1.88091 1.32584 1.12762 1.94555 1.22750 0.92709 0.87192 0.94640 0.92945 1.22877 1.01983 0.95228 0.98135 1.22361 0.98264 0.96106 0.99171 1.22441 1.00012 0.96698 0.96476 1.22105 0.90360 0.94049 0.95715 0.94769 1.58496 1.17462 1.10904 1.48854 0.92828 0.95756 0.95807 0.95206 0.95036 0.91915 0.90142 0.91838 0.91442 0.90202 0.92296 0.85863 0.83438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.24 9.11 -34.44 -0.31 -15.56 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.03 0.77 5.34 -27.89 -0.15 0.62 16 10 C 0.07 1.47 5.72 37.15 0.21 1.68 16 11 O -0.36 -7.47 8.59 -35.23 -0.30 -7.77 16 12 C 0.09 1.40 3.38 -25.43 -0.09 1.31 16 13 H 0.05 0.81 7.82 -51.92 -0.41 0.40 16 14 C -0.14 -2.08 6.55 -25.07 -0.16 -2.24 16 15 C -0.12 -1.38 6.91 -24.74 -0.17 -1.55 16 16 C -0.12 -1.40 6.51 -25.07 -0.16 -1.56 16 17 C 0.09 1.23 4.05 -66.41 -0.27 0.96 16 18 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 19 N -0.83 -11.98 8.54 -3.56 -0.03 -12.01 16 20 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 21 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.03 0.64 8.10 -51.93 -0.42 0.22 16 24 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.03 8.05 -51.93 -0.42 0.61 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.33 3.83 9.06 -39.29 -0.36 3.47 16 32 H 0.35 5.43 8.44 -39.29 -0.33 5.10 16 LS Contribution 265.04 15.07 3.99 3.99 Total: -1.00 -31.15 265.04 -7.10 -38.25 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.28 Total: 2.00 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -1.20 Total: -14.69 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.71 Total: -38.62 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.30 Total: -7.77 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.15 -7.10 -38.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131303582.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.146 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds