Wall clock time and date at job start Mon Mar 30 2020 01:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99677 * 2 1 4 4 H 1.48503 * 109.46847 * 240.00316 * 3 2 1 5 5 H 1.48495 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47207 * 120.00343 * 3 2 1 7 7 C 1.37876 * 120.00522 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99491 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47021 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47128 * 179.97438 * 10 9 7 12 12 O 1.46302 * 110.99929 * 180.02562 * 11 10 9 13 13 C 1.42898 * 114.00115 * 179.97438 * 12 11 10 14 14 C 1.54894 * 110.48190 * 88.24432 * 13 12 11 15 15 C 1.55238 * 102.58338 * 156.67678 * 14 13 12 16 16 C 1.54266 * 104.23333 * 322.08174 * 15 14 13 17 17 C 1.53869 * 106.59800 * 23.61579 * 16 15 14 18 18 H 0.96998 * 120.00279 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47284 * 60.00002 * 9 7 2 20 20 H 1.08993 * 109.47616 * 299.99822 * 9 7 2 21 21 H 1.09001 * 109.46849 * 60.00030 * 10 9 7 22 22 H 1.09002 * 109.47171 * 300.00640 * 10 9 7 23 23 H 1.00900 * 111.00107 * 56.05147 * 11 10 9 24 24 H 1.09002 * 110.43427 * 325.70317 * 13 12 11 25 25 H 1.08996 * 110.75388 * 275.06031 * 14 13 12 26 26 H 1.08993 * 110.76071 * 38.44257 * 14 13 12 27 27 H 1.09005 * 110.46917 * 203.39204 * 15 14 13 28 28 H 1.09007 * 110.58541 * 80.83124 * 15 14 13 29 29 H 1.08999 * 110.03060 * 264.32313 * 16 15 14 30 30 H 1.09006 * 110.06829 * 142.91691 * 16 15 14 31 31 H 1.09001 * 110.02983 * 240.71432 * 17 16 15 32 32 H 1.08996 * 110.07773 * 119.30576 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5110 -4.9342 0.0032 12 8 2.4317 -6.0712 0.0036 13 6 1.7830 -7.3444 0.0059 14 6 1.4958 -7.8090 -1.4435 15 6 1.3895 -9.3501 -1.2900 16 6 2.4722 -9.7031 -0.2493 17 6 2.7224 -8.4279 0.5746 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5575 -0.8880 20 1 0.6249 -2.5563 0.8919 21 1 2.8728 -3.6038 0.8910 22 1 2.8715 -3.6046 -0.8890 23 1 0.8737 -4.9849 -0.7774 24 1 0.8590 -7.2997 0.5824 25 1 0.5574 -7.3887 -1.8050 26 1 2.3200 -7.5425 -2.1051 27 1 1.5979 -9.8431 -2.2396 28 1 0.4021 -9.6315 -0.9238 29 1 3.3893 -10.0080 -0.7534 30 1 2.1195 -10.5042 0.4003 31 1 3.7609 -8.1139 0.4704 32 1 2.4910 -8.6092 1.6242 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136983597.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:35 Heat of formation + Delta-G solvation = -28.238846 kcal Electronic energy + Delta-G solvation = -12439.888531 eV Core-core repulsion = 10208.170034 eV Total energy + Delta-G solvation = -2231.718497 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.33974 -35.64055 -33.74385 -31.87869 -28.78392 -28.29092 -26.80496 -23.73935 -20.75343 -20.63515 -20.00386 -17.22414 -16.26381 -15.68687 -15.07367 -14.48065 -14.42466 -13.52987 -13.32620 -12.98537 -12.37384 -12.29432 -11.85276 -11.30446 -11.22347 -11.16190 -10.94781 -10.71769 -10.60852 -10.48132 -10.23586 -9.73075 -9.54057 -9.25802 -8.40202 -8.03518 -6.04541 -4.07809 3.22970 3.32853 3.36902 3.40917 4.44029 4.57434 4.61487 4.78043 5.30585 5.31828 5.40330 5.43130 5.48921 5.58148 5.72342 5.80913 5.94190 5.98366 6.16885 6.18899 6.24444 6.26647 6.57607 6.85870 7.15287 7.58217 7.74196 7.85402 7.96528 8.34596 8.97835 9.56221 11.06946 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.099357 B = 0.005254 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 281.745767 B = 5327.541498 C = 5448.012717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.031 3.969 10 C 0.056 3.944 11 N -0.504 5.504 12 O -0.259 6.259 13 C 0.083 3.917 14 C -0.154 4.154 15 C -0.122 4.122 16 C -0.121 4.121 17 C -0.118 4.118 18 H 0.262 0.738 19 H 0.017 0.983 20 H 0.029 0.971 21 H 0.071 0.929 22 H 0.029 0.971 23 H 0.327 0.673 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 -16.091 -1.646 16.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.007 4.007 10 C -0.072 4.072 11 N -0.175 5.175 12 O -0.265 6.265 13 C 0.023 3.977 14 C -0.192 4.192 15 C -0.160 4.160 16 C -0.159 4.159 17 C -0.157 4.157 18 H 0.072 0.928 19 H 0.035 0.965 20 H 0.047 0.953 21 H 0.090 0.910 22 H 0.047 0.953 23 H 0.142 0.858 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.486 -15.972 -0.945 16.192 hybrid contribution 0.516 0.956 -1.056 1.515 sum 3.002 -15.015 -2.001 15.443 Atomic orbital electron populations 1.69957 1.06076 1.26925 1.50247 1.24994 0.94880 0.99307 0.95065 0.86576 0.79512 0.82743 0.78701 1.20209 1.21204 1.20099 1.21052 0.93096 0.90482 1.51504 0.92478 1.19053 0.93863 0.89740 0.98084 1.22502 0.98408 0.85915 1.00386 1.67027 1.10025 0.94863 1.45600 1.90769 1.27495 1.11773 1.96436 1.22863 0.96609 0.83538 0.94649 1.23158 1.02003 0.95702 0.98372 1.22310 0.99029 0.95676 0.98959 1.22079 0.99062 0.97207 0.97542 1.22117 1.00646 0.93472 0.99440 0.92792 0.96507 0.95259 0.91024 0.95301 0.85836 0.90705 0.91430 0.90981 0.91699 0.91509 0.91756 0.91711 0.90842 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.80 5.23 -27.88 -0.15 0.66 16 10 C 0.06 1.27 6.16 -3.82 -0.02 1.24 16 11 N -0.50 -9.97 7.31 -10.37 -0.08 -10.05 16 12 O -0.26 -4.76 10.99 -13.92 -0.15 -4.91 16 13 C 0.08 1.18 3.59 -25.07 -0.09 1.09 16 14 C -0.15 -1.89 6.65 -24.55 -0.16 -2.05 16 15 C -0.12 -1.19 6.84 -24.88 -0.17 -1.36 16 16 C -0.12 -1.15 6.80 -25.62 -0.17 -1.33 16 17 C -0.12 -1.40 6.56 -25.62 -0.17 -1.56 16 18 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 19 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 20 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 21 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 22 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.33 5.98 8.92 -39.29 -0.35 5.63 16 24 H 0.07 1.07 8.11 -51.93 -0.42 0.65 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 269.56 15.07 4.06 4.06 Total: -1.00 -30.04 269.56 -7.18 -37.22 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.38 Total: 0.00 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -1.35 Total: -16.91 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.66 Total: -36.08 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.15 Total: -4.91 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.04 -7.18 -37.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136983597.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.977 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds