Wall clock time and date at job start Mon Mar 30 2020 01:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99677 * 2 1 4 4 H 1.48503 * 109.46847 * 240.00316 * 3 2 1 5 5 H 1.48495 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47207 * 120.00343 * 3 2 1 7 7 C 1.37876 * 120.00522 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99491 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47021 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47128 * 179.97438 * 10 9 7 12 12 O 1.46302 * 110.99929 * 180.02562 * 11 10 9 13 13 C 1.42898 * 114.00115 * 179.97438 * 12 11 10 14 14 C 1.54894 * 110.48190 * 88.24432 * 13 12 11 15 15 C 1.55238 * 102.58338 * 156.67678 * 14 13 12 16 16 C 1.54266 * 104.23333 * 322.08174 * 15 14 13 17 17 C 1.53869 * 106.59800 * 23.61579 * 16 15 14 18 18 H 0.96998 * 120.00279 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47284 * 60.00002 * 9 7 2 20 20 H 1.08993 * 109.47616 * 299.99822 * 9 7 2 21 21 H 1.09001 * 109.46849 * 60.00030 * 10 9 7 22 22 H 1.09002 * 109.47171 * 300.00640 * 10 9 7 23 23 H 1.00900 * 111.00107 * 56.05147 * 11 10 9 24 24 H 1.09002 * 110.43427 * 325.70317 * 13 12 11 25 25 H 1.08996 * 110.75388 * 275.06031 * 14 13 12 26 26 H 1.08993 * 110.76071 * 38.44257 * 14 13 12 27 27 H 1.09005 * 110.46917 * 203.39204 * 15 14 13 28 28 H 1.09007 * 110.58541 * 80.83124 * 15 14 13 29 29 H 1.08999 * 110.03060 * 264.32313 * 16 15 14 30 30 H 1.09006 * 110.06829 * 142.91691 * 16 15 14 31 31 H 1.09001 * 110.02983 * 240.71432 * 17 16 15 32 32 H 1.08996 * 110.07773 * 119.30576 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5110 -4.9342 0.0032 12 8 2.4317 -6.0712 0.0036 13 6 1.7830 -7.3444 0.0059 14 6 1.4958 -7.8090 -1.4435 15 6 1.3895 -9.3501 -1.2900 16 6 2.4722 -9.7031 -0.2493 17 6 2.7224 -8.4279 0.5746 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5575 -0.8880 20 1 0.6249 -2.5563 0.8919 21 1 2.8728 -3.6038 0.8910 22 1 2.8715 -3.6046 -0.8890 23 1 0.8737 -4.9849 -0.7774 24 1 0.8590 -7.2997 0.5824 25 1 0.5574 -7.3887 -1.8050 26 1 2.3200 -7.5425 -2.1051 27 1 1.5979 -9.8431 -2.2396 28 1 0.4021 -9.6315 -0.9238 29 1 3.3893 -10.0080 -0.7534 30 1 2.1195 -10.5042 0.4003 31 1 3.7609 -8.1139 0.4704 32 1 2.4910 -8.6092 1.6242 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136983597.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:35 Heat of formation + Delta-G solvation = -46.918310 kcal Electronic energy + Delta-G solvation = -12440.698534 eV Core-core repulsion = 10208.170034 eV Total energy + Delta-G solvation = -2232.528499 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.42527 -37.13133 -35.59074 -33.78041 -30.13066 -29.60323 -28.04084 -25.74616 -22.61866 -21.57397 -21.06377 -18.83379 -18.20137 -16.76841 -16.48031 -16.35815 -15.89407 -15.02759 -14.45102 -14.32990 -14.13999 -13.75682 -13.27046 -12.97220 -12.84720 -12.50718 -12.16410 -12.10460 -12.02394 -11.76716 -11.51820 -11.38372 -11.32732 -11.03291 -10.58613 -9.63310 -8.23564 -6.35753 1.41399 1.44925 1.52691 1.78709 2.42031 3.10483 3.67020 3.69740 3.81318 4.15263 4.35976 4.39029 4.50143 4.55052 4.58995 4.76472 4.78674 4.87970 4.96107 5.06189 5.13823 5.20140 5.25076 5.41439 5.45124 5.47292 5.67047 5.84852 6.15260 6.40370 6.78331 7.33636 8.88557 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.099357 B = 0.005254 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 281.745767 B = 5327.541498 C = 5448.012717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.062 0.938 9 C 0.038 3.962 10 C 0.075 3.925 11 N -0.509 5.509 12 O -0.269 6.269 13 C 0.068 3.932 14 C -0.154 4.154 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.116 4.116 18 H 0.266 0.734 19 H 0.000 1.000 20 H 0.003 0.997 21 H 0.066 0.934 22 H 0.029 0.971 23 H 0.335 0.665 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 -16.892 -1.856 17.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.080 0.920 9 C 0.001 3.999 10 C -0.055 4.055 11 N -0.179 5.179 12 O -0.277 6.277 13 C 0.010 3.990 14 C -0.192 4.192 15 C -0.154 4.154 16 C -0.153 4.153 17 C -0.155 4.155 18 H 0.075 0.925 19 H 0.019 0.981 20 H 0.022 0.978 21 H 0.085 0.915 22 H 0.047 0.953 23 H 0.150 0.850 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.276 -16.789 -1.159 17.144 hybrid contribution 0.236 1.101 -0.982 1.494 sum 3.512 -15.688 -2.140 16.218 Atomic orbital electron populations 1.70084 1.07792 1.28147 1.50864 1.25953 0.95797 1.03338 0.94272 0.85422 0.78219 0.77702 0.79227 1.19138 1.20578 1.19149 1.21470 0.93625 0.91725 1.51828 0.91987 1.18853 0.93985 0.91163 0.95945 1.22066 0.97133 0.86161 1.00098 1.66838 1.10110 0.94828 1.46146 1.90743 1.27626 1.12589 1.96737 1.23259 0.97116 0.82262 0.96410 1.23132 1.01561 0.97870 0.96630 1.22317 0.99751 0.93410 0.99916 1.22084 0.99516 0.96292 0.97441 1.22163 0.99379 0.93646 1.00342 0.92499 0.98141 0.97829 0.91524 0.95258 0.85008 0.90953 0.91504 0.91895 0.90198 0.90498 0.90887 0.89777 0.91790 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.29 21.45 0.28 -56.00 16 2 C 0.00 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.97 44.11 29.54 68.60 2.03 46.13 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.55 -31.51 9.11 25.60 0.23 -31.28 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.04 2.07 5.23 29.85 0.16 2.23 16 10 C 0.07 3.39 6.16 86.31 0.53 3.92 16 11 N -0.51 -20.30 7.31 -186.71 -1.36 -21.67 16 12 O -0.27 -9.81 10.99 -50.16 -0.55 -10.37 16 13 C 0.07 1.88 3.59 31.67 0.11 1.99 16 14 C -0.15 -3.57 6.65 32.01 0.21 -3.36 16 15 C -0.12 -1.95 6.84 31.79 0.22 -1.74 16 16 C -0.12 -1.88 6.80 31.32 0.21 -1.66 16 17 C -0.12 -2.57 6.56 31.32 0.21 -2.36 16 18 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 19 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 20 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 21 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 22 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.33 12.37 8.92 -89.69 -0.80 11.57 16 24 H 0.07 2.03 8.11 -2.39 -0.02 2.01 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.06 1.53 8.07 -2.39 -0.02 1.51 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -63.67 269.56 3.02 -60.65 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.28 Total: 12.76 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 2.35 Total: -31.51 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -1.08 Total: -77.67 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -0.55 Total: -10.37 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -63.67 3.02 -60.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136983597.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.736 kcal (2) G-P(sol) polarization free energy of solvation -63.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds