Wall clock time and date at job start Mon Mar 30 2020 02:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 120.00172 * 2 1 4 4 H 1.48497 * 109.47278 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47204 * 300.00542 * 3 2 1 6 6 H 1.48501 * 109.47003 * 60.00331 * 3 2 1 7 7 C 1.37873 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99919 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00232 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47406 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00234 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47508 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.50587 * 304.93058 * 12 11 10 14 14 C 1.53119 * 109.50759 * 184.79947 * 12 11 10 15 15 C 1.53120 * 109.16202 * 182.40539 * 14 12 11 16 16 C 1.53041 * 109.27703 * 57.65829 * 15 14 12 17 17 N 1.46847 * 109.51486 * 300.81824 * 16 15 14 18 18 C 1.46847 * 111.20163 * 61.75514 * 17 16 15 19 19 H 0.97006 * 119.99534 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47016 * 60.00315 * 9 7 2 21 21 H 1.09004 * 109.47367 * 300.00516 * 9 7 2 22 22 H 1.09008 * 109.47229 * 59.99671 * 11 10 9 23 23 H 1.08998 * 109.47444 * 300.00216 * 11 10 9 24 24 H 1.08993 * 109.52284 * 302.31804 * 14 12 11 25 25 H 1.09003 * 109.51872 * 62.50253 * 14 12 11 26 26 H 1.08996 * 109.50328 * 177.59853 * 15 14 12 27 27 H 1.08996 * 109.50004 * 297.72216 * 15 14 12 28 28 H 1.09005 * 109.45785 * 60.83329 * 16 15 14 29 29 H 1.08994 * 109.46278 * 180.80636 * 16 15 14 30 30 H 1.00902 * 111.00813 * 297.64967 * 17 16 15 31 31 H 1.09002 * 109.46448 * 178.23132 * 18 17 16 32 32 H 1.08994 * 109.45958 * 58.25497 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6478 -5.9563 -0.0017 13 1 3.3210 -5.7966 -0.8440 14 6 1.9936 -7.3354 -0.1231 15 6 3.0791 -8.4136 -0.0625 16 6 3.8590 -8.2724 1.2468 17 7 4.4660 -6.9370 1.3145 18 6 3.4402 -5.8863 1.3058 19 1 -0.4850 0.8401 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8897 22 1 0.9450 -4.9822 -0.8914 23 1 0.9445 -4.9827 0.8886 24 1 1.2913 -7.4789 0.6979 25 1 1.4639 -7.4048 -1.0732 26 1 2.6157 -9.3992 -0.1055 27 1 3.7590 -8.2933 -0.9058 28 1 3.1809 -8.4065 2.0896 29 1 4.6419 -9.0297 1.2866 30 1 5.1281 -6.8021 0.5652 31 1 3.9189 -4.9105 1.3885 32 1 2.7642 -6.0317 2.1483 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165099093.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:19 Heat of formation + Delta-G solvation = -70.765717 kcal Electronic energy + Delta-G solvation = -12794.139021 eV Core-core repulsion = 10560.576420 eV Total energy + Delta-G solvation = -2233.562600 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.92955 -36.43837 -32.88879 -32.00199 -31.10706 -27.37339 -25.07696 -23.50257 -22.29924 -21.39922 -20.04016 -16.44733 -15.83024 -15.54070 -15.29540 -14.65280 -14.35558 -14.00772 -13.78592 -12.94859 -12.65403 -12.10698 -12.03866 -11.61700 -11.23467 -11.07197 -10.93370 -10.84262 -10.76457 -10.37992 -10.30338 -9.95255 -9.09321 -8.84447 -8.25299 -8.15292 -6.11351 -4.13089 3.29308 3.35715 3.42358 4.31765 4.40061 4.64732 4.87378 4.93274 5.13583 5.23827 5.25267 5.52864 5.57272 5.63685 5.75497 5.89373 5.93436 6.00765 6.07343 6.15284 6.27444 6.41899 6.55745 7.09372 7.12380 7.42225 7.45994 7.79509 8.14895 8.57556 9.00789 9.52016 11.00293 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.073801 B = 0.006393 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.308496 B = 4378.781066 C = 4630.084060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.395 6.395 11 C 0.071 3.929 12 C -0.120 4.120 13 H 0.074 0.926 14 C -0.114 4.114 15 C -0.155 4.155 16 C 0.055 3.945 17 N -0.688 5.688 18 C 0.065 3.935 19 H 0.263 0.737 20 H 0.004 0.996 21 H 0.005 0.995 22 H 0.035 0.965 23 H 0.036 0.964 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.339 0.661 31 H 0.089 0.911 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.556 -14.331 0.440 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.315 6.315 11 C -0.007 4.007 12 C -0.141 4.141 13 H 0.092 0.908 14 C -0.152 4.152 15 C -0.195 4.195 16 C -0.075 4.075 17 N -0.316 5.316 18 C -0.064 4.064 19 H 0.073 0.927 20 H 0.022 0.978 21 H 0.023 0.977 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.156 0.844 31 H 0.107 0.893 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.675 -14.184 1.154 14.979 hybrid contribution -0.459 0.832 -1.061 1.424 sum 4.216 -13.353 0.093 14.003 Atomic orbital electron populations 1.69982 1.06130 1.27052 1.50674 1.24959 0.94980 0.99479 0.95136 0.86277 0.80035 0.82550 0.77624 1.19448 1.20852 1.20807 1.21101 0.94102 0.89351 1.50666 0.91478 1.20200 0.88776 0.83609 0.95347 1.87828 1.35572 1.12939 1.95174 1.22182 0.94142 0.85363 0.99006 1.21828 0.98389 0.93618 1.00215 0.90783 1.21552 0.97704 0.93884 1.02033 1.22248 0.98772 0.99038 0.99417 1.22028 0.97763 0.91333 0.96360 1.60707 1.17291 1.02093 1.51486 1.22049 0.93265 0.95437 0.95655 0.92709 0.97815 0.97723 0.94728 0.94554 0.91811 0.91950 0.91685 0.92069 0.91105 0.91149 0.84374 0.89293 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -15.30 9.43 -34.44 -0.32 -15.62 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.19 5.43 5.69 36.01 0.20 5.64 16 10 O -0.40 -9.62 9.88 -35.23 -0.35 -9.97 16 11 C 0.07 1.35 5.32 37.16 0.20 1.55 16 12 C -0.12 -1.83 2.58 -90.54 -0.23 -2.06 16 13 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 14 C -0.11 -1.40 5.29 -26.61 -0.14 -1.54 16 15 C -0.16 -1.60 6.08 -26.65 -0.16 -1.76 16 16 C 0.06 0.59 6.55 -3.83 -0.03 0.56 16 17 N -0.69 -8.82 6.87 -113.81 -0.78 -9.60 16 18 C 0.07 0.98 5.72 -3.83 -0.02 0.96 16 19 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 20 H 0.00 0.12 8.14 -51.93 -0.42 -0.31 16 21 H 0.00 0.14 8.14 -51.93 -0.42 -0.28 16 22 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.34 4.03 8.86 -39.29 -0.35 3.68 16 31 H 0.09 1.54 7.85 -51.93 -0.41 1.13 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 263.55 15.07 3.97 3.97 Total: -1.00 -30.71 263.55 -7.42 -38.13 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -5.37 Total: -2.32 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -0.60 Total: -10.76 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: -0.04 Total: -36.02 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -0.35 Total: -9.97 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.71 -7.42 -38.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165099093.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.640 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds