Wall clock time and date at job start Mon Mar 30 2020 02:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 120.00172 * 2 1 4 4 H 1.48497 * 109.47278 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47204 * 300.00542 * 3 2 1 6 6 H 1.48501 * 109.47003 * 60.00331 * 3 2 1 7 7 C 1.37873 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99919 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00232 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47406 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00234 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47508 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.50587 * 304.93058 * 12 11 10 14 14 C 1.53119 * 109.50759 * 184.79947 * 12 11 10 15 15 C 1.53120 * 109.16202 * 182.40539 * 14 12 11 16 16 C 1.53041 * 109.27703 * 57.65829 * 15 14 12 17 17 N 1.46847 * 109.51486 * 300.81824 * 16 15 14 18 18 C 1.46847 * 111.20163 * 61.75514 * 17 16 15 19 19 H 0.97006 * 119.99534 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47016 * 60.00315 * 9 7 2 21 21 H 1.09004 * 109.47367 * 300.00516 * 9 7 2 22 22 H 1.09008 * 109.47229 * 59.99671 * 11 10 9 23 23 H 1.08998 * 109.47444 * 300.00216 * 11 10 9 24 24 H 1.08993 * 109.52284 * 302.31804 * 14 12 11 25 25 H 1.09003 * 109.51872 * 62.50253 * 14 12 11 26 26 H 1.08996 * 109.50328 * 177.59853 * 15 14 12 27 27 H 1.08996 * 109.50004 * 297.72216 * 15 14 12 28 28 H 1.09005 * 109.45785 * 60.83329 * 16 15 14 29 29 H 1.08994 * 109.46278 * 180.80636 * 16 15 14 30 30 H 1.00902 * 111.00813 * 297.64967 * 17 16 15 31 31 H 1.09002 * 109.46448 * 178.23132 * 18 17 16 32 32 H 1.08994 * 109.45958 * 58.25497 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6478 -5.9563 -0.0017 13 1 3.3210 -5.7966 -0.8440 14 6 1.9936 -7.3354 -0.1231 15 6 3.0791 -8.4136 -0.0625 16 6 3.8590 -8.2724 1.2468 17 7 4.4660 -6.9370 1.3145 18 6 3.4402 -5.8863 1.3058 19 1 -0.4850 0.8401 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8897 22 1 0.9450 -4.9822 -0.8914 23 1 0.9445 -4.9827 0.8886 24 1 1.2913 -7.4789 0.6979 25 1 1.4639 -7.4048 -1.0732 26 1 2.6157 -9.3992 -0.1055 27 1 3.7590 -8.2933 -0.9058 28 1 3.1809 -8.4065 2.0896 29 1 4.6419 -9.0297 1.2866 30 1 5.1281 -6.8021 0.5652 31 1 3.9189 -4.9105 1.3885 32 1 2.7642 -6.0317 2.1483 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165099093.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:19 Heat of formation + Delta-G solvation = -92.584228 kcal Electronic energy + Delta-G solvation = -12795.085142 eV Core-core repulsion = 10560.576420 eV Total energy + Delta-G solvation = -2234.508722 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.11355 -38.21556 -35.00686 -33.31012 -32.19059 -29.47646 -26.54586 -24.69104 -24.33923 -22.53914 -21.18486 -18.66791 -17.36266 -16.98495 -16.79005 -16.36036 -15.64007 -15.40372 -15.33885 -14.39896 -14.00143 -13.60755 -13.34901 -13.13273 -12.87715 -12.79200 -12.54672 -12.21691 -12.17608 -11.94302 -11.55006 -11.40811 -11.22729 -10.90910 -10.28607 -9.26656 -8.34746 -6.47623 1.39322 1.40885 1.55781 2.33285 2.99142 3.06650 3.40479 3.75684 3.89528 4.01582 4.16887 4.31931 4.48502 4.53051 4.60112 4.65015 4.69164 4.83627 4.99223 5.02651 5.08151 5.12158 5.15517 5.23309 5.38824 5.52806 5.92570 6.07546 6.47462 6.50764 6.78547 7.24695 8.77989 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.073801 B = 0.006393 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.308496 B = 4378.781066 C = 4630.084060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.986 3.014 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.062 0.938 9 C 0.208 3.792 10 O -0.407 6.407 11 C 0.062 3.938 12 C -0.111 4.111 13 H 0.068 0.932 14 C -0.111 4.111 15 C -0.148 4.148 16 C 0.053 3.947 17 N -0.692 5.692 18 C 0.072 3.928 19 H 0.271 0.729 20 H -0.015 1.015 21 H -0.014 1.014 22 H 0.037 0.963 23 H 0.039 0.961 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.345 0.655 31 H 0.059 0.941 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.397 -14.964 0.343 15.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.080 0.920 9 C 0.133 3.867 10 O -0.327 6.327 11 C -0.015 4.015 12 C -0.131 4.131 13 H 0.086 0.914 14 C -0.148 4.148 15 C -0.187 4.187 16 C -0.076 4.076 17 N -0.320 5.320 18 C -0.058 4.058 19 H 0.080 0.920 20 H 0.002 0.998 21 H 0.003 0.997 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.163 0.837 31 H 0.078 0.922 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.518 -14.852 1.055 15.879 hybrid contribution -0.756 0.939 -1.025 1.582 sum 4.762 -13.913 0.031 14.706 Atomic orbital electron populations 1.70084 1.07815 1.28673 1.50480 1.25993 0.95985 1.03488 0.93791 0.85102 0.78630 0.77118 0.78349 1.18804 1.19558 1.19541 1.21419 0.94124 0.90807 1.52333 0.91980 1.19835 0.88649 0.84756 0.93416 1.87795 1.35460 1.14292 1.95170 1.22531 0.95778 0.83979 0.99232 1.21796 0.97211 0.94017 1.00121 0.91365 1.21554 0.98398 0.92369 1.02517 1.22202 0.98059 0.99210 0.99208 1.22142 0.98508 0.90321 0.96629 1.60684 1.16765 1.02584 1.51957 1.21843 0.93498 0.95025 0.95412 0.91974 0.99759 0.99654 0.94446 0.94264 0.91467 0.91389 0.89372 0.91678 0.91148 0.88967 0.83739 0.92245 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 2 C 0.01 0.34 5.46 84.65 0.46 0.81 16 3 Si 0.99 44.83 29.54 68.60 2.03 46.85 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -33.39 9.43 25.60 0.24 -33.14 16 8 H 0.06 3.74 7.81 -2.91 -0.02 3.71 16 9 C 0.21 12.05 5.69 71.24 0.41 12.45 16 10 O -0.41 -20.46 9.88 -148.98 -1.47 -21.94 16 11 C 0.06 2.41 5.32 71.98 0.38 2.79 16 12 C -0.11 -3.33 2.58 -10.74 -0.03 -3.36 16 13 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 14 C -0.11 -2.51 5.29 30.67 0.16 -2.35 16 15 C -0.15 -2.59 6.08 30.65 0.19 -2.41 16 16 C 0.05 1.00 6.55 86.33 0.57 1.56 16 17 N -0.69 -16.78 6.87 -513.99 -3.53 -20.31 16 18 C 0.07 2.17 5.72 86.33 0.49 2.66 16 19 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 20 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 21 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 22 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 23 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.34 7.70 8.86 -89.69 -0.79 6.91 16 31 H 0.06 2.12 7.85 -2.39 -0.02 2.10 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -66.04 263.55 0.46 -65.58 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 0.28 Total: 7.18 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 2.87 Total: -20.98 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -3.24 Total: -76.70 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -1.47 Total: -21.94 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -66.04 0.46 -65.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165099093.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.006 kcal (2) G-P(sol) polarization free energy of solvation -66.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds