Wall clock time and date at job start Mon Mar 30 2020 01:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48497 * 109.47300 * 240.00497 * 3 2 1 5 5 H 1.48504 * 109.46856 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46819 * 120.00279 * 3 2 1 7 7 C 1.37878 * 119.99634 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99569 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00274 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47189 * 180.02562 * 9 7 2 11 11 N 1.46894 * 109.47390 * 179.97438 * 10 9 7 12 12 C 1.46899 * 111.00591 * 179.97438 * 11 10 9 13 13 C 1.52993 * 109.47380 * 174.70291 * 12 11 10 14 14 C 1.52999 * 115.55196 * 294.93434 * 13 12 11 15 15 O 1.42901 * 109.47130 * 294.90205 * 14 13 12 16 16 C 1.53006 * 117.49840 * 149.26557 * 13 12 11 17 17 C 1.53007 * 117.49882 * 80.60506 * 13 12 11 18 18 H 0.97006 * 119.99855 * 359.97438 * 1 2 3 19 19 H 1.08990 * 109.47206 * 60.00327 * 9 7 2 20 20 H 1.09002 * 109.46995 * 299.99671 * 9 7 2 21 21 H 1.08994 * 109.47049 * 300.00343 * 10 9 7 22 22 H 1.09003 * 109.47125 * 59.99578 * 10 9 7 23 23 H 1.00904 * 110.99950 * 56.04455 * 11 10 9 24 24 H 1.08996 * 109.46763 * 294.70768 * 12 11 10 25 25 H 1.09002 * 109.46398 * 54.69899 * 12 11 10 26 26 H 1.08998 * 109.47019 * 54.90247 * 14 13 12 27 27 H 1.08998 * 109.47556 * 174.90384 * 14 13 12 28 28 H 0.96695 * 114.00572 * 180.02562 * 15 14 13 29 29 H 1.09004 * 117.49503 * 359.97438 * 16 13 12 30 30 H 1.08992 * 117.49818 * 145.01956 * 16 13 12 31 31 H 1.08998 * 117.49633 * 214.97919 * 17 13 12 32 32 H 1.08994 * 117.49607 * 0.02562 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9343 0.0001 12 6 2.4351 -6.0760 -0.0005 13 6 1.6399 -7.3761 0.1333 14 6 0.8922 -7.5593 1.4556 15 8 1.8344 -7.6650 2.5248 16 6 2.2154 -8.6280 -0.5321 17 6 0.9871 -7.9383 -1.1311 18 1 -0.4850 0.8401 0.0004 19 1 0.6240 -2.5567 -0.8902 20 1 0.6247 -2.5571 0.8897 21 1 2.8718 -3.6044 -0.8904 22 1 2.8719 -3.6044 0.8894 23 1 0.8740 -4.9846 -0.7811 24 1 2.9968 -6.0881 -0.9345 25 1 3.1258 -5.9845 0.8377 26 1 0.2424 -6.7013 1.6274 27 1 0.2909 -8.4672 1.4102 28 1 1.4300 -7.7835 3.3951 29 1 3.1604 -8.5250 -1.0655 30 1 2.0611 -9.5819 -0.0280 31 1 0.0251 -8.4390 -1.0209 32 1 1.1245 -7.3821 -2.0583 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168874365.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:11 Heat of formation + Delta-G solvation = -63.536528 kcal Electronic energy + Delta-G solvation = -12533.826254 eV Core-core repulsion = 10300.577134 eV Total energy + Delta-G solvation = -2233.249119 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.75998 -37.14580 -36.41437 -34.80430 -31.46176 -28.11413 -26.97139 -24.98792 -23.28978 -22.40464 -19.98678 -18.50881 -18.14508 -17.23037 -16.49732 -16.23072 -15.78578 -15.23516 -14.77838 -14.33324 -14.12612 -13.95836 -13.42939 -12.88714 -12.85345 -12.54245 -12.39550 -12.17942 -11.88679 -11.43310 -11.37278 -11.17645 -10.97120 -10.58337 -10.56552 -9.28361 -8.20929 -6.32797 1.40083 1.43689 1.51691 2.40195 2.69241 3.12264 3.38135 3.50204 3.86832 3.89874 4.08608 4.33701 4.47309 4.51851 4.59470 4.73136 4.76462 4.88651 4.98211 5.04207 5.07949 5.16933 5.25077 5.42788 5.65937 5.77184 6.12675 6.26179 6.55177 6.83858 6.97176 7.36436 8.91124 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.061899 B = 0.005957 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.240378 B = 4698.888240 C = 4781.418041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.034 3.966 10 C 0.084 3.916 11 N -0.690 5.690 12 C 0.103 3.897 13 C -0.140 4.140 14 C 0.122 3.878 15 O -0.589 6.589 16 C -0.157 4.157 17 C -0.159 4.159 18 H 0.265 0.735 19 H -0.007 1.007 20 H -0.006 1.006 21 H 0.017 0.983 22 H 0.052 0.948 23 H 0.339 0.661 24 H 0.028 0.972 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.393 0.607 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.283 -15.982 0.031 16.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.587 4.587 8 H 0.077 0.923 9 C -0.003 4.003 10 C -0.044 4.044 11 N -0.320 5.320 12 C -0.026 4.026 13 C -0.141 4.141 14 C 0.044 3.956 15 O -0.397 6.397 16 C -0.194 4.194 17 C -0.196 4.196 18 H 0.073 0.927 19 H 0.011 0.989 20 H 0.013 0.987 21 H 0.035 0.965 22 H 0.071 0.929 23 H 0.156 0.844 24 H 0.046 0.954 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.242 0.758 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.478 -15.805 0.231 16.000 hybrid contribution 0.084 1.029 -0.404 1.109 sum 2.562 -14.776 -0.173 14.998 Atomic orbital electron populations 1.70101 1.07825 1.27934 1.51256 1.25981 0.95794 1.03382 0.94487 0.85456 0.78247 0.77871 0.79184 1.19107 1.20598 1.19229 1.21591 0.93512 0.92343 1.51251 0.92290 1.18896 0.94220 0.92138 0.95092 1.21765 0.95653 0.88594 0.98433 1.60377 1.20241 1.01434 1.49986 1.21303 0.93471 0.88537 0.99315 1.21361 1.04317 0.94376 0.94001 1.21490 0.89662 0.99542 0.84895 1.86417 1.37433 1.96558 1.19280 1.23059 0.97944 0.95693 1.02733 1.23092 0.98069 1.02997 0.95438 0.92661 0.98859 0.98748 0.96467 0.92900 0.84391 0.95350 0.92137 0.93749 0.92057 0.75790 0.88556 0.87447 0.87091 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.55 -32.19 9.11 25.60 0.23 -31.96 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.87 5.23 29.85 0.16 2.03 16 10 C 0.08 3.77 5.61 86.31 0.48 4.25 16 11 N -0.69 -25.91 6.31 -513.92 -3.24 -29.15 16 12 C 0.10 3.25 5.46 86.30 0.47 3.72 16 13 C -0.14 -3.58 1.98 -52.18 -0.10 -3.68 16 14 C 0.12 3.00 6.81 71.98 0.49 3.49 16 15 O -0.59 -15.07 13.57 -148.98 -2.02 -17.09 16 16 C -0.16 -3.18 9.94 30.62 0.30 -2.88 16 17 C -0.16 -3.24 9.94 30.62 0.30 -2.93 16 18 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 19 H -0.01 -0.41 8.14 -2.39 -0.02 -0.42 16 20 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 21 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 23 H 0.34 12.19 8.79 -89.69 -0.79 11.40 16 24 H 0.03 0.85 8.09 -2.39 -0.02 0.84 16 25 H 0.06 2.10 8.10 -2.39 -0.02 2.08 16 26 H 0.04 1.26 8.05 -2.39 -0.02 1.24 16 27 H 0.06 1.18 8.09 -2.39 -0.02 1.17 16 28 H 0.39 6.39 9.12 -74.06 -0.68 5.71 16 29 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.11 1.89 8.14 -2.39 -0.02 1.88 16 32 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -67.63 275.01 -0.52 -68.15 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -0.37 Total: 15.93 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: 2.80 Total: -27.39 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -2.96 Total: -86.49 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -2.02 Total: -17.09 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -67.63 -0.52 -68.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168874365.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.615 kcal (2) G-P(sol) polarization free energy of solvation -67.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds