Wall clock time and date at job start Mon Mar 30 2020 01:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00220 * 2 1 4 4 H 1.48505 * 109.46866 * 240.00135 * 3 2 1 5 5 H 1.48501 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47467 * 119.99761 * 3 2 1 7 7 C 1.37872 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00056 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47116 * 179.97438 * 9 7 2 11 11 C 1.46902 * 111.00003 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47544 * 204.99735 * 11 10 9 13 13 C 1.52997 * 109.47201 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46862 * 60.00295 * 13 12 11 15 15 O 1.42903 * 109.47256 * 60.00148 * 14 13 12 16 16 C 1.53001 * 109.47329 * 299.99879 * 14 13 12 17 17 C 1.52997 * 109.47050 * 60.00237 * 16 14 13 18 18 H 0.96998 * 119.99839 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.47092 * 59.99578 * 9 7 2 20 20 H 1.09000 * 109.46982 * 299.99527 * 9 7 2 21 21 H 1.00899 * 110.99978 * 303.95087 * 10 9 7 22 22 H 1.09006 * 109.47333 * 325.00517 * 11 10 9 23 23 H 1.09009 * 109.46785 * 60.00169 * 12 11 10 24 24 H 1.08997 * 109.47329 * 300.00515 * 12 11 10 25 25 H 1.08997 * 109.47549 * 300.00564 * 13 12 11 26 26 H 1.08997 * 109.46932 * 180.02562 * 13 12 11 27 27 H 1.09008 * 109.47201 * 179.97438 * 14 13 12 28 28 H 0.96700 * 114.00311 * 180.02562 * 15 14 13 29 29 H 1.08999 * 109.47164 * 180.02562 * 16 14 13 30 30 H 1.08997 * 109.47124 * 299.99757 * 16 14 13 31 31 H 1.08997 * 109.46932 * 180.02562 * 17 16 14 32 32 H 1.08997 * 109.47549 * 59.99780 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5053 -4.9070 0.0011 12 6 2.4115 -5.9785 0.6107 13 6 1.6819 -7.3232 0.6119 14 6 1.3273 -7.7123 -0.8247 15 8 2.5240 -7.8204 -1.5982 16 6 0.4210 -6.6408 -1.4343 17 6 1.1507 -5.2961 -1.4355 18 1 -0.4850 0.8400 -0.0004 19 1 0.6246 -2.5570 -0.8897 20 1 0.6240 -2.5567 0.8903 21 1 2.8404 -3.5487 -0.7809 22 1 0.5922 -4.8250 0.5908 23 1 2.6638 -5.7015 1.6344 24 1 3.3246 -6.0606 0.0210 25 1 0.7691 -7.2409 1.2018 26 1 2.3274 -8.0864 1.0465 27 1 0.8078 -8.6706 -0.8240 28 1 2.3747 -8.0643 -2.5219 29 1 0.1680 -6.9182 -2.4576 30 1 -0.4918 -6.5585 -0.8444 31 1 0.5049 -4.5327 -1.8694 32 1 2.0635 -5.3784 -2.0254 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217910474.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:04 Heat of formation + Delta-G solvation = -74.148914 kcal Electronic energy + Delta-G solvation = -13035.716577 eV Core-core repulsion = 10802.007270 eV Total energy + Delta-G solvation = -2233.709307 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.05131 -35.89226 -33.49676 -31.95944 -30.51621 -28.44538 -25.56585 -22.46588 -21.98013 -20.84572 -19.57025 -16.79084 -16.41912 -15.55058 -14.73495 -14.55775 -13.96935 -13.53256 -13.31661 -12.81566 -12.23184 -11.93225 -11.92233 -11.69823 -11.18596 -11.15958 -10.84711 -10.67643 -10.59783 -10.08035 -9.99447 -9.79785 -9.54137 -9.10606 -8.44601 -7.16771 -5.99939 -4.01628 3.35868 3.39222 3.42874 4.31572 4.46160 4.89240 4.93516 5.05696 5.35612 5.35692 5.47768 5.57169 5.69344 5.76994 5.88050 6.05829 6.13790 6.17720 6.32236 6.47626 6.51508 6.77657 6.84548 7.32831 7.49955 7.69977 7.83756 8.18602 8.48522 8.69804 9.08184 9.63162 11.11136 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.073274 B = 0.006962 C = 0.006827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.036236 B = 4020.658534 C = 4100.246259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.195 3.805 10 N -0.686 5.686 11 C 0.088 3.912 12 C -0.102 4.102 13 C -0.111 4.111 14 C 0.106 3.894 15 O -0.562 6.562 16 C -0.147 4.147 17 C -0.143 4.143 18 H 0.261 0.739 19 H -0.014 1.014 20 H 0.026 0.974 21 H 0.329 0.671 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.371 0.629 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.991 -14.101 -2.665 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.315 5.315 11 C -0.023 4.023 12 C -0.140 4.140 13 C -0.149 4.149 14 C 0.047 3.953 15 O -0.367 6.367 16 C -0.186 4.186 17 C -0.182 4.182 18 H 0.071 0.929 19 H 0.003 0.997 20 H 0.044 0.956 21 H 0.145 0.855 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.188 -13.766 -1.381 13.886 hybrid contribution -0.384 0.777 -1.511 1.742 sum 0.804 -12.989 -2.891 13.331 Atomic orbital electron populations 1.69955 1.06080 1.26820 1.51041 1.24989 0.94875 0.99338 0.95395 0.86545 0.79421 0.82680 0.78653 1.20291 1.21363 1.20149 1.21194 0.93517 0.90387 1.50199 0.92048 1.19558 0.90653 0.87426 0.95562 1.60729 1.20805 1.01107 1.48823 1.21519 0.96369 0.90715 0.93663 1.21417 0.98873 0.92361 1.01330 1.21553 1.01050 0.98476 0.93864 1.21795 0.85286 0.96003 0.92190 1.86545 1.32058 1.92846 1.25223 1.22196 0.99125 0.96707 1.00563 1.22196 1.00503 0.95801 0.99689 0.92917 0.99651 0.95623 0.85470 0.91598 0.91770 0.91561 0.90960 0.91749 0.93493 0.78271 0.92418 0.91244 0.92065 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -14.97 9.32 -34.44 -0.32 -15.29 16 8 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 9 C 0.19 5.24 5.24 -4.97 -0.03 5.22 16 10 N -0.69 -15.33 6.24 -107.98 -0.67 -16.01 16 11 C 0.09 1.63 2.47 -67.71 -0.17 1.46 16 12 C -0.10 -1.63 5.38 -26.73 -0.14 -1.77 16 13 C -0.11 -1.45 5.66 -26.73 -0.15 -1.60 16 14 C 0.11 1.27 3.77 -26.73 -0.10 1.17 16 15 O -0.56 -6.96 11.97 -35.23 -0.42 -7.38 16 16 C -0.15 -1.89 5.64 -26.73 -0.15 -2.04 16 17 C -0.14 -2.33 5.03 -26.73 -0.13 -2.46 16 18 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 19 H -0.01 -0.40 7.44 -51.93 -0.39 -0.79 16 20 H 0.03 0.75 8.05 -51.93 -0.42 0.33 16 21 H 0.33 7.14 8.47 -39.29 -0.33 6.81 16 22 H 0.07 1.28 7.80 -51.93 -0.40 0.88 16 23 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 24 H 0.07 1.12 7.68 -51.93 -0.40 0.72 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.37 3.09 9.08 45.56 0.41 3.51 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.11 7.45 -51.93 -0.39 0.73 16 32 H 0.06 1.06 7.67 -51.93 -0.40 0.66 16 LS Contribution 258.94 15.07 3.90 3.90 Total: -1.00 -31.26 258.94 -7.16 -38.42 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -4.39 Total: 4.39 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -1.29 Total: -13.80 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.06 Total: -42.59 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.42 Total: -7.38 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.26 -7.16 -38.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217910474.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.726 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds