Wall clock time and date at job start Mon Mar 30 2020 01:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00220 * 2 1 4 4 H 1.48505 * 109.46866 * 240.00135 * 3 2 1 5 5 H 1.48501 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47467 * 119.99761 * 3 2 1 7 7 C 1.37872 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00056 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47116 * 179.97438 * 9 7 2 11 11 C 1.46902 * 111.00003 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47544 * 204.99735 * 11 10 9 13 13 C 1.52997 * 109.47201 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46862 * 60.00295 * 13 12 11 15 15 O 1.42903 * 109.47256 * 60.00148 * 14 13 12 16 16 C 1.53001 * 109.47329 * 299.99879 * 14 13 12 17 17 C 1.52997 * 109.47050 * 60.00237 * 16 14 13 18 18 H 0.96998 * 119.99839 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.47092 * 59.99578 * 9 7 2 20 20 H 1.09000 * 109.46982 * 299.99527 * 9 7 2 21 21 H 1.00899 * 110.99978 * 303.95087 * 10 9 7 22 22 H 1.09006 * 109.47333 * 325.00517 * 11 10 9 23 23 H 1.09009 * 109.46785 * 60.00169 * 12 11 10 24 24 H 1.08997 * 109.47329 * 300.00515 * 12 11 10 25 25 H 1.08997 * 109.47549 * 300.00564 * 13 12 11 26 26 H 1.08997 * 109.46932 * 180.02562 * 13 12 11 27 27 H 1.09008 * 109.47201 * 179.97438 * 14 13 12 28 28 H 0.96700 * 114.00311 * 180.02562 * 15 14 13 29 29 H 1.08999 * 109.47164 * 180.02562 * 16 14 13 30 30 H 1.08997 * 109.47124 * 299.99757 * 16 14 13 31 31 H 1.08997 * 109.46932 * 180.02562 * 17 16 14 32 32 H 1.08997 * 109.47549 * 59.99780 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5053 -4.9070 0.0011 12 6 2.4115 -5.9785 0.6107 13 6 1.6819 -7.3232 0.6119 14 6 1.3273 -7.7123 -0.8247 15 8 2.5240 -7.8204 -1.5982 16 6 0.4210 -6.6408 -1.4343 17 6 1.1507 -5.2961 -1.4355 18 1 -0.4850 0.8400 -0.0004 19 1 0.6246 -2.5570 -0.8897 20 1 0.6240 -2.5567 0.8903 21 1 2.8404 -3.5487 -0.7809 22 1 0.5922 -4.8250 0.5908 23 1 2.6638 -5.7015 1.6344 24 1 3.3246 -6.0606 0.0210 25 1 0.7691 -7.2409 1.2018 26 1 2.3274 -8.0864 1.0465 27 1 0.8078 -8.6706 -0.8240 28 1 2.3747 -8.0643 -2.5219 29 1 0.1680 -6.9182 -2.4576 30 1 -0.4918 -6.5585 -0.8444 31 1 0.5049 -4.5327 -1.8694 32 1 2.0635 -5.3784 -2.0254 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217910474.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:04 Heat of formation + Delta-G solvation = -98.180421 kcal Electronic energy + Delta-G solvation = -13036.758661 eV Core-core repulsion = 10802.007270 eV Total energy + Delta-G solvation = -2234.751391 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.24097 -37.30302 -35.27034 -33.75887 -31.69499 -30.06937 -27.46553 -24.04060 -23.50291 -22.38602 -20.78345 -18.59006 -17.71596 -16.93832 -16.62290 -15.84282 -15.53236 -15.12466 -14.74897 -14.27890 -13.87158 -13.57463 -13.26382 -13.08270 -12.84548 -12.75011 -12.60770 -12.26872 -12.00539 -11.85919 -11.47638 -11.16678 -11.13097 -10.66300 -10.59023 -9.03255 -8.23787 -6.35617 1.39722 1.43830 1.51903 2.39108 3.08859 3.37922 3.66238 3.81623 3.86392 4.12535 4.25433 4.36527 4.50167 4.60446 4.62373 4.81985 4.94419 5.00314 5.08119 5.16686 5.21619 5.22598 5.32453 5.46398 5.51227 5.63221 6.02327 6.47923 6.73475 6.88982 6.99727 7.35554 8.87575 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.073274 B = 0.006962 C = 0.006827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.036236 B = 4020.658534 C = 4100.246259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.213 3.787 10 N -0.688 5.688 11 C 0.084 3.916 12 C -0.093 4.093 13 C -0.112 4.112 14 C 0.111 3.889 15 O -0.579 6.579 16 C -0.142 4.142 17 C -0.136 4.136 18 H 0.266 0.734 19 H -0.039 1.039 20 H -0.005 1.005 21 H 0.332 0.668 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.389 0.611 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.662 -14.990 -3.054 15.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.085 3.915 10 N -0.317 5.317 11 C -0.026 4.026 12 C -0.131 4.131 13 C -0.149 4.149 14 C 0.052 3.948 15 O -0.387 6.387 16 C -0.181 4.181 17 C -0.175 4.175 18 H 0.074 0.926 19 H -0.021 1.021 20 H 0.013 0.987 21 H 0.149 0.851 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.238 0.762 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.865 -14.689 -1.785 14.914 hybrid contribution -0.606 1.011 -1.394 1.825 sum 1.259 -13.678 -3.178 14.099 Atomic orbital electron populations 1.70086 1.07827 1.28112 1.51400 1.25979 0.95831 1.03450 0.94450 0.85359 0.78114 0.77477 0.79183 1.19070 1.20558 1.19316 1.21562 0.93809 0.91640 1.50878 0.91900 1.19167 0.90594 0.88891 0.92872 1.60646 1.20286 1.01704 1.49092 1.21646 0.96071 0.89569 0.95316 1.21304 0.98317 0.93309 1.00153 1.21589 1.01376 0.96561 0.95410 1.21781 0.85114 0.96808 0.91096 1.86506 1.32384 1.92991 1.26793 1.22191 0.98907 0.94655 1.02320 1.22051 1.00463 0.97411 0.97556 0.92556 1.02109 0.98674 0.85089 0.93228 0.92776 0.92264 0.89986 0.90311 0.90325 0.76183 0.90098 0.91085 0.94839 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.73 13.29 21.45 0.28 -57.45 16 2 C 0.00 0.06 5.46 84.65 0.46 0.53 16 3 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.54 -32.10 9.32 25.60 0.24 -31.86 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 9 C 0.21 11.94 5.24 85.56 0.45 12.39 16 10 N -0.69 -31.71 6.24 -495.55 -3.09 -34.80 16 11 C 0.08 3.15 2.47 44.92 0.11 3.26 16 12 C -0.09 -2.91 5.38 30.59 0.16 -2.75 16 13 C -0.11 -2.65 5.66 30.59 0.17 -2.47 16 14 C 0.11 2.30 3.77 30.59 0.12 2.41 16 15 O -0.58 -12.61 11.97 -148.98 -1.78 -14.40 16 16 C -0.14 -3.34 5.64 30.59 0.17 -3.17 16 17 C -0.14 -4.41 5.03 30.60 0.15 -4.26 16 18 H 0.27 15.36 8.31 -92.71 -0.77 14.58 16 19 H -0.04 -2.32 7.44 -2.39 -0.02 -2.33 16 20 H 0.00 -0.30 8.05 -2.39 -0.02 -0.32 16 21 H 0.33 14.78 8.47 -89.69 -0.76 14.02 16 22 H 0.05 2.00 7.80 -2.38 -0.02 1.98 16 23 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 24 H 0.06 1.94 7.68 -2.39 -0.02 1.92 16 25 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.39 5.22 9.08 -74.06 -0.67 4.55 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.03 1.25 7.45 -2.39 -0.02 1.23 16 32 H 0.07 2.12 7.67 -2.39 -0.02 2.10 16 Total: -1.00 -67.80 258.94 -0.85 -68.66 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -0.33 Total: 16.61 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 2.04 Total: -25.91 kcal Atomic # 7 Polarization: -89.44 SS G_CDS: -2.81 Total: -92.24 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -1.78 Total: -14.40 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -67.80 -0.85 -68.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217910474.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.521 kcal (2) G-P(sol) polarization free energy of solvation -67.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds