Wall clock time and date at job start Mon Mar 30 2020 01:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99789 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00217 * 3 2 1 5 5 H 1.48501 * 109.47275 * 30.00256 * 3 2 1 6 6 H 1.48499 * 109.47039 * 150.00056 * 3 2 1 7 7 C 1.38805 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00292 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99849 * 179.97438 * 7 2 1 10 10 C 1.46506 * 120.00073 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.46722 * 324.72459 * 10 9 7 12 12 C 1.52995 * 109.47182 * 84.72333 * 10 9 7 13 13 C 1.52996 * 109.47136 * 60.00005 * 12 10 9 14 14 C 1.53002 * 109.46865 * 60.00270 * 13 12 10 15 15 C 1.52998 * 109.46851 * 299.99472 * 14 13 12 16 16 C 1.52996 * 109.46955 * 60.00583 * 15 14 13 17 17 H 1.09002 * 109.47186 * 59.99723 * 16 15 14 18 18 C 1.53005 * 109.47228 * 179.97438 * 16 15 14 19 19 O 1.42896 * 109.47247 * 295.00350 * 18 16 15 20 20 H 0.97000 * 119.99835 * 359.97438 * 1 2 3 21 21 H 0.97005 * 120.00057 * 359.72558 * 9 7 2 22 22 H 1.09002 * 109.47097 * 180.02562 * 12 10 9 23 23 H 1.09007 * 109.47360 * 299.99766 * 12 10 9 24 24 H 1.09008 * 109.46942 * 179.97438 * 13 12 10 25 25 H 1.08992 * 109.47179 * 299.99954 * 13 12 10 26 26 H 1.08992 * 109.47480 * 59.99868 * 14 13 12 27 27 H 1.09008 * 109.46926 * 180.02562 * 14 13 12 28 28 H 1.09001 * 109.47056 * 179.97438 * 15 14 13 29 29 H 1.09002 * 109.47400 * 300.00436 * 15 14 13 30 30 H 1.09005 * 109.46781 * 55.00078 * 18 16 15 31 31 H 1.08997 * 109.47306 * 174.99752 * 18 16 15 32 32 H 0.96697 * 114.00147 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4708 0.0000 11 1 3.5676 -3.2048 0.5939 12 6 4.2519 -2.9791 -1.4363 13 6 5.0163 -1.9488 -2.2699 14 6 6.4063 -1.7352 -1.6671 15 6 6.2667 -1.2268 -0.2308 16 6 5.5022 -2.2571 0.6027 17 1 6.0473 -3.2011 0.6028 18 6 5.3631 -1.7490 2.0393 19 8 6.6563 -1.6606 2.6406 20 1 -0.4850 0.8401 0.0004 21 1 3.8647 -0.3619 -0.0048 22 1 4.7965 -3.9233 -1.4362 23 1 3.2616 -3.1314 -1.8657 24 1 5.1162 -2.3112 -3.2931 25 1 4.4713 -1.0049 -2.2699 26 1 6.9513 -2.6791 -1.6671 27 1 6.9508 -1.0008 -2.2608 28 1 7.2569 -1.0751 0.1987 29 1 5.7216 -0.2828 -0.2309 30 1 4.8974 -0.7635 2.0325 31 1 4.7431 -2.4399 2.6106 32 1 6.6445 -1.3441 3.5542 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218510476.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:02 Heat of formation + Delta-G solvation = -58.647834 kcal Electronic energy + Delta-G solvation = -13624.776925 eV Core-core repulsion = 11391.739795 eV Total energy + Delta-G solvation = -2233.037130 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.90245 -36.10622 -33.62601 -31.39360 -30.77153 -28.80764 -25.04607 -23.25922 -21.70841 -20.78519 -18.37606 -17.87956 -16.80900 -15.03836 -14.78893 -14.32051 -14.22766 -13.67151 -13.39677 -12.66636 -12.49767 -12.07647 -11.86695 -11.54592 -11.11135 -10.94658 -10.78496 -10.56447 -10.31910 -9.98896 -9.86657 -9.67553 -9.48715 -9.35873 -8.87258 -7.23270 -5.76361 -3.10579 3.35541 3.39072 3.44383 4.52372 4.58841 5.08053 5.24949 5.31640 5.49825 5.56456 5.62925 5.77877 5.85080 5.96905 6.02376 6.12948 6.14919 6.20815 6.32787 6.34568 6.55562 6.66825 6.74961 6.84059 6.96412 7.04157 7.87153 8.01622 8.43413 9.22477 9.95136 10.16107 11.42345 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.030698 B = 0.013763 C = 0.012038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.895044 B = 2033.936244 C = 2325.320601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.879 3.121 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.238 4.238 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.186 3.814 11 H 0.055 0.945 12 C -0.132 4.132 13 C -0.114 4.114 14 C -0.116 4.116 15 C -0.109 4.109 16 C -0.090 4.090 17 H 0.073 0.927 18 C 0.082 3.918 19 O -0.581 6.581 20 H 0.259 0.741 21 H 0.361 0.639 22 H 0.046 0.954 23 H 0.065 0.935 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.402 -3.321 0.818 12.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.191 4.191 3 Si 0.709 3.291 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.368 4.368 8 H 0.108 0.892 9 N -0.389 5.389 10 C 0.076 3.924 11 H 0.073 0.927 12 C -0.172 4.172 13 C -0.151 4.151 14 C -0.153 4.153 15 C -0.146 4.146 16 C -0.109 4.109 17 H 0.091 0.909 18 C 0.005 3.995 19 O -0.386 6.386 20 H 0.069 0.931 21 H 0.195 0.805 22 H 0.065 0.935 23 H 0.084 0.916 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 12.324 -3.602 0.238 12.842 hybrid contribution 0.242 1.489 0.493 1.588 sum 12.566 -2.113 0.732 12.763 Atomic orbital electron populations 1.69697 1.05049 1.25683 1.57911 1.24634 0.95156 0.96983 1.02354 0.86644 0.79183 0.85389 0.77874 1.21065 1.21777 1.20460 1.19092 0.80700 0.94615 1.42420 0.89204 1.42871 1.03823 1.02013 1.90199 1.20161 0.89397 0.89298 0.93508 0.92663 1.22075 1.00012 0.96846 0.98244 1.21420 0.95245 1.00845 0.97626 1.21526 0.97467 1.00291 0.96065 1.21468 0.99843 0.98558 0.94756 1.21396 0.97642 0.99070 0.92775 0.90881 1.22244 0.83157 1.00454 0.93669 1.86421 1.30776 1.90096 1.31273 0.93138 0.80478 0.93529 0.91608 0.93353 0.91273 0.92622 0.92859 0.92079 0.92302 0.92911 0.93694 0.78191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.21 13.97 55.49 0.78 -28.44 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 3 Si 0.88 22.08 27.73 -169.99 -4.71 17.36 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 7 C -0.24 -6.57 10.41 -15.06 -0.16 -6.73 16 8 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 9 N -0.74 -17.13 3.47 -53.42 -0.19 -17.32 16 10 C 0.19 3.56 2.54 -67.93 -0.17 3.39 16 11 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 12 C -0.13 -2.32 5.61 -26.74 -0.15 -2.47 16 13 C -0.11 -1.90 5.77 -26.73 -0.15 -2.05 16 14 C -0.12 -1.73 5.92 -26.73 -0.16 -1.89 16 15 C -0.11 -1.77 4.93 -26.73 -0.13 -1.90 16 16 C -0.09 -1.50 2.22 -90.62 -0.20 -1.70 16 17 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 18 C 0.08 1.35 6.19 37.16 0.23 1.58 16 19 O -0.58 -8.55 13.19 -35.23 -0.46 -9.01 16 20 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 21 H 0.36 8.31 3.73 -40.82 -0.15 8.16 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 24 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 25 H 0.07 1.33 7.60 -51.93 -0.39 0.93 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.06 0.95 7.82 -51.93 -0.41 0.55 16 29 H 0.06 1.06 6.51 -51.93 -0.34 0.72 16 30 H 0.05 0.96 7.61 -51.93 -0.40 0.57 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.37 3.79 9.12 45.56 0.42 4.21 16 LS Contribution 252.03 15.07 3.80 3.80 Total: -1.00 -30.76 252.03 -6.02 -36.78 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -4.24 Total: 8.57 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -0.99 Total: -11.74 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.59 Total: -45.76 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.46 Total: -9.01 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.76 -6.02 -36.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218510476.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.865 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds