Wall clock time and date at job start Mon Mar 30 2020 01:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99789 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00217 * 3 2 1 5 5 H 1.48501 * 109.47275 * 30.00256 * 3 2 1 6 6 H 1.48499 * 109.47039 * 150.00056 * 3 2 1 7 7 C 1.38805 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00292 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99849 * 179.97438 * 7 2 1 10 10 C 1.46506 * 120.00073 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.46722 * 324.72459 * 10 9 7 12 12 C 1.52995 * 109.47182 * 84.72333 * 10 9 7 13 13 C 1.52996 * 109.47136 * 60.00005 * 12 10 9 14 14 C 1.53002 * 109.46865 * 60.00270 * 13 12 10 15 15 C 1.52998 * 109.46851 * 299.99472 * 14 13 12 16 16 C 1.52996 * 109.46955 * 60.00583 * 15 14 13 17 17 H 1.09002 * 109.47186 * 59.99723 * 16 15 14 18 18 C 1.53005 * 109.47228 * 179.97438 * 16 15 14 19 19 O 1.42896 * 109.47247 * 295.00350 * 18 16 15 20 20 H 0.97000 * 119.99835 * 359.97438 * 1 2 3 21 21 H 0.97005 * 120.00057 * 359.72558 * 9 7 2 22 22 H 1.09002 * 109.47097 * 180.02562 * 12 10 9 23 23 H 1.09007 * 109.47360 * 299.99766 * 12 10 9 24 24 H 1.09008 * 109.46942 * 179.97438 * 13 12 10 25 25 H 1.08992 * 109.47179 * 299.99954 * 13 12 10 26 26 H 1.08992 * 109.47480 * 59.99868 * 14 13 12 27 27 H 1.09008 * 109.46926 * 180.02562 * 14 13 12 28 28 H 1.09001 * 109.47056 * 179.97438 * 15 14 13 29 29 H 1.09002 * 109.47400 * 300.00436 * 15 14 13 30 30 H 1.09005 * 109.46781 * 55.00078 * 18 16 15 31 31 H 1.08997 * 109.47306 * 174.99752 * 18 16 15 32 32 H 0.96697 * 114.00147 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4708 0.0000 11 1 3.5676 -3.2048 0.5939 12 6 4.2519 -2.9791 -1.4363 13 6 5.0163 -1.9488 -2.2699 14 6 6.4063 -1.7352 -1.6671 15 6 6.2667 -1.2268 -0.2308 16 6 5.5022 -2.2571 0.6027 17 1 6.0473 -3.2011 0.6028 18 6 5.3631 -1.7490 2.0393 19 8 6.6563 -1.6606 2.6406 20 1 -0.4850 0.8401 0.0004 21 1 3.8647 -0.3619 -0.0048 22 1 4.7965 -3.9233 -1.4362 23 1 3.2616 -3.1314 -1.8657 24 1 5.1162 -2.3112 -3.2931 25 1 4.4713 -1.0049 -2.2699 26 1 6.9513 -2.6791 -1.6671 27 1 6.9508 -1.0008 -2.2608 28 1 7.2569 -1.0751 0.1987 29 1 5.7216 -0.2828 -0.2309 30 1 4.8974 -0.7635 2.0325 31 1 4.7431 -2.4399 2.6106 32 1 6.6445 -1.3441 3.5542 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218510476.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:02 Heat of formation + Delta-G solvation = -80.741487 kcal Electronic energy + Delta-G solvation = -13625.734977 eV Core-core repulsion = 11391.739795 eV Total energy + Delta-G solvation = -2233.995182 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.32201 -37.33730 -35.49415 -33.22366 -32.20486 -30.44240 -26.46472 -25.18181 -23.14436 -22.12479 -19.88052 -19.85206 -18.10890 -16.66864 -16.28672 -15.90183 -15.83006 -15.12832 -14.84686 -14.50127 -14.01878 -13.65010 -13.33361 -12.94321 -12.90016 -12.48662 -12.39885 -12.13800 -11.97053 -11.79892 -11.32507 -11.24753 -10.95862 -10.81964 -10.67724 -9.25431 -8.00703 -5.31380 1.34316 1.36880 1.43743 2.47486 3.29964 3.34430 3.62715 3.90172 3.98022 4.06997 4.31928 4.47690 4.50611 4.65285 4.68078 4.75506 4.82147 4.88618 5.00909 5.11011 5.22678 5.35062 5.39031 5.43330 5.59686 5.63683 5.82132 6.24373 6.89694 7.10705 7.88209 8.07448 9.21428 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.030698 B = 0.013763 C = 0.012038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.895044 B = 2033.936244 C = 2325.320601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.063 4.063 3 Si 0.943 3.057 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.256 1.256 7 C -0.218 4.218 8 H 0.058 0.942 9 N -0.744 5.744 10 C 0.178 3.822 11 H 0.044 0.956 12 C -0.128 4.128 13 C -0.113 4.113 14 C -0.110 4.110 15 C -0.107 4.107 16 C -0.084 4.084 17 H 0.093 0.907 18 C 0.088 3.912 19 O -0.583 6.583 20 H 0.256 0.744 21 H 0.364 0.636 22 H 0.077 0.923 23 H 0.037 0.963 24 H 0.066 0.934 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.031 0.969 31 H 0.045 0.955 32 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.270 -3.435 0.740 15.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.254 4.254 3 Si 0.772 3.228 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.180 1.180 7 C -0.349 4.349 8 H 0.076 0.924 9 N -0.388 5.388 10 C 0.070 3.930 11 H 0.062 0.938 12 C -0.168 4.168 13 C -0.151 4.151 14 C -0.147 4.147 15 C -0.144 4.144 16 C -0.103 4.103 17 H 0.111 0.889 18 C 0.010 3.990 19 O -0.391 6.391 20 H 0.065 0.935 21 H 0.198 0.802 22 H 0.096 0.904 23 H 0.056 0.944 24 H 0.085 0.915 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 15.255 -3.743 0.177 15.708 hybrid contribution -0.630 1.396 0.547 1.626 sum 14.625 -2.348 0.723 14.830 Atomic orbital electron populations 1.69872 1.06972 1.26344 1.60505 1.25360 0.95928 1.00680 1.03435 0.85581 0.78640 0.80615 0.78003 1.20750 1.22321 1.18044 1.19042 0.82723 0.93241 1.39866 0.92398 1.42834 1.02152 1.03776 1.90038 1.20389 0.90564 0.87285 0.94750 0.93799 1.21992 0.99294 0.98677 0.96813 1.21405 0.95993 0.98906 0.98764 1.21502 0.96324 1.01847 0.95023 1.21459 0.99904 0.97340 0.95727 1.21322 0.95801 1.00340 0.92849 0.88897 1.22049 0.83882 0.99199 0.93883 1.86366 1.29427 1.90223 1.33052 0.93544 0.80184 0.90436 0.94378 0.91487 0.94322 0.90443 0.91281 0.90846 0.94358 0.95037 0.93706 0.75812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.43 13.97 21.65 0.30 -63.13 16 2 C -0.06 -3.71 5.50 84.86 0.47 -3.25 16 3 Si 0.94 45.97 27.73 68.60 1.90 47.88 16 4 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 6 H -0.26 -11.34 6.52 99.48 0.65 -10.69 16 7 C -0.22 -12.25 10.41 84.03 0.87 -11.37 16 8 H 0.06 3.58 8.06 -2.91 -0.02 3.55 16 9 N -0.74 -33.98 3.47 -322.93 -1.12 -35.10 16 10 C 0.18 6.62 2.54 44.99 0.11 6.73 16 11 H 0.04 1.72 8.08 -2.38 -0.02 1.71 16 12 C -0.13 -4.30 5.61 30.59 0.17 -4.13 16 13 C -0.11 -3.51 5.77 30.59 0.18 -3.33 16 14 C -0.11 -2.84 5.92 30.59 0.18 -2.66 16 15 C -0.11 -3.13 4.93 30.59 0.15 -2.98 16 16 C -0.08 -2.58 2.22 -10.79 -0.02 -2.61 16 17 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 18 C 0.09 2.70 6.19 71.98 0.45 3.14 16 19 O -0.58 -15.30 13.19 -148.98 -1.97 -17.26 16 20 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 21 H 0.36 16.35 3.73 -92.70 -0.35 16.01 16 22 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 23 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 24 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 25 H 0.04 1.43 7.60 -2.39 -0.02 1.41 16 26 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.07 2.00 7.82 -2.39 -0.02 1.98 16 29 H 0.04 1.28 6.51 -2.39 -0.02 1.26 16 30 H 0.03 1.10 7.61 -2.38 -0.02 1.08 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.39 6.78 9.12 -74.06 -0.68 6.11 16 Total: -1.00 -66.52 252.03 1.70 -64.82 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.02 Total: 23.23 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 2.56 Total: -20.44 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -0.82 Total: -98.23 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -1.97 Total: -17.26 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.90 Total: 47.88 kcal Total: -66.52 1.70 -64.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218510476.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.917 kcal (2) G-P(sol) polarization free energy of solvation -66.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds