Wall clock time and date at job start Mon Mar 30 2020 01:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00466 * 2 1 4 4 H 1.48498 * 109.47350 * 270.00443 * 3 2 1 5 5 H 1.48508 * 109.46838 * 30.00271 * 3 2 1 6 6 H 1.48501 * 109.47325 * 149.99854 * 3 2 1 7 7 C 1.38815 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99965 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00344 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00698 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46684 * 34.99695 * 10 9 7 12 12 C 1.52997 * 109.47079 * 274.99967 * 10 9 7 13 13 C 1.53006 * 109.47164 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46626 * 59.99702 * 13 12 10 15 15 C 1.52997 * 109.47592 * 300.00035 * 14 13 12 16 16 C 1.52996 * 109.47165 * 60.00300 * 15 14 13 17 17 H 1.08996 * 109.47134 * 59.99508 * 16 15 14 18 18 C 1.52995 * 109.47577 * 180.02562 * 16 15 14 19 19 O 1.42908 * 109.46696 * 294.99924 * 18 16 15 20 20 H 0.97000 * 120.00048 * 359.97438 * 1 2 3 21 21 H 0.97008 * 119.99747 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.46922 * 59.99748 * 12 10 9 23 23 H 1.09000 * 109.47140 * 299.99448 * 12 10 9 24 24 H 1.08993 * 109.46955 * 180.02562 * 13 12 10 25 25 H 1.09000 * 109.47050 * 300.00004 * 13 12 10 26 26 H 1.09000 * 109.47160 * 60.00369 * 14 13 12 27 27 H 1.09002 * 109.46719 * 180.02562 * 14 13 12 28 28 H 1.09000 * 109.47140 * 300.00346 * 15 14 13 29 29 H 1.09001 * 109.47375 * 180.02562 * 15 14 13 30 30 H 1.08998 * 109.47220 * 54.99171 * 18 16 15 31 31 H 1.08991 * 109.47712 * 174.99863 * 18 16 15 32 32 H 0.96699 * 114.00081 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2024 0.0000 10 6 4.1120 -2.4711 0.0000 11 1 3.5648 -3.2065 -0.5898 12 6 4.2576 -2.9759 1.4369 13 6 5.0220 -4.3013 1.4369 14 6 6.4094 -4.0897 0.8276 15 6 6.2638 -3.5848 -0.6094 16 6 5.4994 -2.2595 -0.6093 17 1 6.0469 -1.5244 -0.0196 18 6 5.3532 -1.7549 -2.0463 19 8 6.6441 -1.4468 -2.5765 20 1 -0.4850 0.8400 0.0004 21 1 3.8646 -0.3623 0.0004 22 1 3.2691 -3.1270 1.8708 23 1 4.8048 -2.2405 2.0267 24 1 5.1253 -4.6611 2.4605 25 1 4.4745 -5.0365 0.8472 26 1 6.9569 -3.3544 1.4173 27 1 6.9539 -5.0340 0.8271 28 1 5.7163 -4.3201 -1.1991 29 1 7.2523 -3.4345 -1.0436 30 1 4.8847 -2.5270 -2.6566 31 1 4.7333 -0.8585 -2.0554 32 1 6.6277 -1.1200 -3.4864 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218510569.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:03 Heat of formation + Delta-G solvation = -84.540478 kcal Electronic energy + Delta-G solvation = -13385.280095 eV Core-core repulsion = 11151.120176 eV Total energy + Delta-G solvation = -2234.159919 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.14037 -37.29125 -35.91667 -33.43032 -32.22373 -30.13249 -26.46084 -25.25277 -22.56718 -22.00691 -20.98845 -19.55524 -18.11501 -16.86283 -16.27173 -15.90097 -15.47319 -14.99946 -14.76921 -14.57236 -14.34716 -13.65325 -13.37256 -13.00337 -12.84960 -12.54636 -12.32719 -11.99539 -11.93056 -11.81297 -11.43829 -11.27721 -11.03133 -10.84035 -10.74289 -9.29306 -8.02526 -5.35039 1.36142 1.38076 1.45757 2.47077 3.27931 3.32771 3.51943 3.91287 3.98457 4.13316 4.32018 4.44890 4.49885 4.61619 4.64190 4.70600 4.76977 4.88191 5.06406 5.17231 5.29940 5.31781 5.34581 5.37979 5.54782 5.64512 5.78368 6.22020 6.89845 7.07364 7.83899 8.03254 9.19206 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.034371 B = 0.011997 C = 0.009803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.436220 B = 2333.354961 C = 2855.542440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.063 4.063 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.257 1.257 7 C -0.224 4.224 8 H 0.057 0.943 9 N -0.751 5.751 10 C 0.184 3.816 11 H 0.044 0.956 12 C -0.129 4.129 13 C -0.112 4.112 14 C -0.113 4.113 15 C -0.099 4.099 16 C -0.087 4.087 17 H 0.064 0.936 18 C 0.086 3.914 19 O -0.584 6.584 20 H 0.257 0.743 21 H 0.363 0.637 22 H 0.038 0.962 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.100 -6.153 -1.837 16.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.254 4.254 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.182 1.182 7 C -0.355 4.355 8 H 0.075 0.925 9 N -0.394 5.394 10 C 0.076 3.924 11 H 0.062 0.938 12 C -0.169 4.169 13 C -0.150 4.150 14 C -0.151 4.151 15 C -0.137 4.137 16 C -0.106 4.106 17 H 0.083 0.917 18 C 0.008 3.992 19 O -0.391 6.391 20 H 0.066 0.934 21 H 0.196 0.804 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 15.073 -6.437 -1.260 16.438 hybrid contribution -0.571 1.479 -0.461 1.651 sum 14.502 -4.958 -1.720 15.423 Atomic orbital electron populations 1.69875 1.07028 1.26524 1.60077 1.25433 0.96027 1.00955 1.03028 0.85477 0.78503 0.80095 0.78115 1.20328 1.22340 1.18192 1.19015 0.82538 0.93327 1.40578 0.92470 1.42864 1.02457 1.03853 1.90238 1.20374 0.90442 0.86954 0.94626 0.93819 1.22061 0.99232 0.97640 0.98003 1.21511 0.96113 0.96088 1.01315 1.21530 0.96477 1.01676 0.95396 1.21438 1.00114 0.94665 0.97503 1.21328 0.95798 0.98905 0.94581 0.91712 1.22078 0.83981 0.98615 0.94534 1.86373 1.29488 1.88397 1.34890 0.93426 0.80426 0.94336 0.93002 0.91096 0.92018 0.92130 0.89973 0.91816 0.90891 0.93332 0.94783 0.75778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.41 13.97 21.65 0.30 -63.11 16 2 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 3 Si 0.95 46.07 27.74 68.60 1.90 47.97 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 6 H -0.26 -11.47 6.52 99.48 0.65 -10.82 16 7 C -0.22 -12.74 10.41 84.03 0.87 -11.87 16 8 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 9 N -0.75 -35.20 4.15 -322.94 -1.34 -36.54 16 10 C 0.18 7.00 2.21 44.99 0.10 7.10 16 11 H 0.04 1.76 8.08 -2.39 -0.02 1.75 16 12 C -0.13 -4.51 5.50 30.60 0.17 -4.34 16 13 C -0.11 -2.93 5.92 30.60 0.18 -2.75 16 14 C -0.11 -2.58 5.92 30.59 0.18 -2.39 16 15 C -0.10 -2.52 5.10 30.59 0.16 -2.36 16 16 C -0.09 -2.74 2.01 -10.80 -0.02 -2.76 16 17 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 18 C 0.09 2.65 6.34 71.98 0.46 3.11 16 19 O -0.58 -15.57 13.20 -148.98 -1.97 -17.54 16 20 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 21 H 0.36 16.61 5.45 -92.70 -0.51 16.11 16 22 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.77 7.82 -2.39 -0.02 1.75 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 31 H 0.03 1.20 7.30 -2.39 -0.02 1.18 16 32 H 0.39 6.89 9.12 -74.06 -0.68 6.21 16 Total: -1.00 -67.11 256.13 1.32 -65.79 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -0.14 Total: 22.96 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 2.56 Total: -19.54 kcal Atomic # 7 Polarization: -98.61 SS G_CDS: -1.04 Total: -99.65 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -1.97 Total: -17.54 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.90 Total: 47.97 kcal Total: -67.11 1.32 -65.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218510569.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.748 kcal (2) G-P(sol) polarization free energy of solvation -67.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds