Wall clock time and date at job start Mon Mar 30 2020 02:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47282 * 2 1 4 4 N 1.46900 * 109.47461 * 239.99642 * 2 1 3 5 5 C 1.47011 * 110.99728 * 56.20760 * 4 2 1 6 6 C 1.53097 * 109.25930 * 177.61098 * 5 4 2 7 7 O 1.43016 * 109.25978 * 56.84799 * 6 5 4 8 8 C 1.43022 * 113.73851 * 301.33451 * 7 6 5 9 9 C 1.47020 * 111.00008 * 292.57745 * 4 2 1 10 10 H 1.08994 * 109.50764 * 62.40767 * 9 4 2 11 11 C 1.50705 * 109.50438 * 302.32394 * 9 4 2 12 12 H 1.08003 * 119.99660 * 354.48567 * 11 9 4 13 13 C 1.37872 * 119.99965 * 174.48456 * 11 9 4 14 14 N 1.31514 * 120.00042 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 120.00039 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46993 * 90.00234 * 15 13 11 17 17 H 1.48495 * 109.47193 * 210.00030 * 15 13 11 18 18 H 1.48501 * 109.47187 * 330.00354 * 15 13 11 19 19 H 1.08995 * 109.46865 * 300.00434 * 1 2 3 20 20 H 1.08997 * 109.46842 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46789 * 60.00362 * 1 2 3 22 22 H 1.09007 * 109.47361 * 119.99619 * 2 1 3 23 23 H 1.08999 * 109.47530 * 65.90955 * 3 2 1 24 24 H 1.09005 * 109.47634 * 185.91682 * 3 2 1 25 25 H 1.09006 * 109.47257 * 305.91470 * 3 2 1 26 26 H 1.09003 * 109.50761 * 297.54335 * 5 4 2 27 27 H 1.08996 * 109.51004 * 57.67590 * 5 4 2 28 28 H 1.09007 * 109.50749 * 296.91538 * 6 5 4 29 29 H 1.08995 * 109.51056 * 176.78706 * 6 5 4 30 30 H 1.09005 * 109.50211 * 298.73065 * 8 7 6 31 31 H 1.08995 * 109.50712 * 178.60713 * 8 7 6 32 32 H 0.96996 * 120.00223 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0198 -0.6926 -1.1994 5 6 1.4757 -0.0804 -2.4202 6 6 2.0568 -0.7927 -3.6445 7 8 1.7618 -2.1897 -3.5615 8 6 2.2775 -2.8182 -2.3848 9 6 1.6986 -2.1263 -1.1479 10 1 0.6166 -2.2565 -1.1302 11 6 2.2987 -2.7321 0.0947 12 1 2.9362 -2.1370 0.7318 13 6 2.0340 -4.0460 0.4180 14 7 1.2582 -4.7707 -0.3581 15 14 2.7785 -4.7971 1.9578 16 1 1.8582 -4.5892 3.1046 17 1 2.9867 -6.2523 1.7478 18 1 4.0823 -4.1469 2.2452 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 0.8901 23 1 1.7657 1.9249 0.9381 24 1 3.1249 1.4443 -0.1059 25 1 1.5928 1.9860 -0.8323 26 1 0.3900 -0.1780 -2.4236 27 1 1.7470 0.9748 -2.4503 28 1 3.1371 -0.6498 -3.6701 29 1 1.6129 -0.3802 -4.5504 30 1 3.3642 -2.7341 -2.3738 31 1 1.9932 -3.8704 -2.3799 32 1 1.0716 -5.6950 -0.1304 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221453880.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:08 Heat of formation + Delta-G solvation = -44.948011 kcal Electronic energy + Delta-G solvation = -13837.264827 eV Core-core repulsion = 11604.821767 eV Total energy + Delta-G solvation = -2232.443061 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.84794 -35.81339 -33.17487 -30.79318 -29.86398 -26.62386 -25.82611 -24.84289 -22.27693 -20.42778 -18.50020 -16.38589 -15.75548 -15.12212 -14.60376 -14.05406 -13.77160 -13.52862 -13.37912 -13.02483 -12.30169 -12.09998 -11.38267 -11.28574 -10.99175 -10.87486 -10.69748 -10.61195 -10.55381 -10.08719 -9.93414 -9.46528 -9.08673 -8.67078 -8.34777 -7.16649 -6.10437 -4.13860 3.27158 3.34358 3.38059 4.35510 4.82718 4.97472 5.23778 5.57038 5.69722 5.84672 5.88141 5.95670 6.03510 6.09206 6.19813 6.32302 6.39383 6.51023 6.58501 6.68583 6.79746 6.90911 7.03894 7.34407 7.56154 7.73095 7.92264 8.20877 8.24046 8.57552 8.94556 9.51429 10.98387 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.032535 B = 0.014669 C = 0.011335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.397273 B = 1908.285097 C = 2469.733041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.082 3.918 3 C -0.141 4.141 4 N -0.528 5.528 5 C 0.014 3.986 6 C 0.067 3.933 7 O -0.405 6.405 8 C 0.072 3.928 9 C 0.186 3.814 10 H 0.017 0.983 11 C -0.507 4.507 12 H 0.066 0.934 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.898 3.102 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.273 1.273 19 H 0.046 0.954 20 H 0.064 0.936 21 H 0.045 0.955 22 H 0.095 0.905 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.033 0.967 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.113 0.887 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.339 7.902 -1.274 8.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.027 4.027 3 C -0.199 4.199 4 N -0.253 5.253 5 C -0.115 4.115 6 C -0.010 4.010 7 O -0.324 6.324 8 C -0.005 4.005 9 C 0.079 3.921 10 H 0.034 0.966 11 C -0.545 4.545 12 H 0.084 0.916 13 C -0.142 4.142 14 N -0.531 5.531 15 Si 0.726 3.274 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.197 1.197 19 H 0.065 0.935 20 H 0.083 0.917 21 H 0.064 0.936 22 H 0.113 0.887 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.130 0.870 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.684 7.646 -1.445 7.811 hybrid contribution -0.445 -0.408 1.065 1.224 sum 0.239 7.238 -0.380 7.252 Atomic orbital electron populations 1.22395 0.98760 1.02379 1.00282 1.21569 0.91945 0.93556 0.95611 1.21872 1.01431 0.96393 1.00205 1.62516 1.57856 1.05155 0.99798 1.22743 0.97563 0.98511 0.92639 1.22441 0.98887 0.83307 0.96402 1.87892 1.78941 1.20593 1.44985 1.23066 0.96226 0.98655 0.82516 1.19850 0.95612 0.81928 0.94705 0.96589 1.21038 1.29932 0.96272 1.07265 0.91627 1.24989 0.95005 0.97150 0.97036 1.69905 1.36746 1.08818 1.37644 0.86492 0.79625 0.78350 0.82982 1.20701 1.21173 1.19745 0.93455 0.91717 0.93625 0.88747 0.93285 0.92347 0.93682 0.94877 0.91440 0.93649 0.90464 0.94811 0.86958 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.32 8.47 37.16 0.31 -3.01 16 2 C 0.08 1.60 2.72 -67.72 -0.18 1.41 16 3 C -0.14 -2.23 8.90 37.15 0.33 -1.90 16 4 N -0.53 -11.47 4.50 -219.79 -0.99 -12.46 16 5 C 0.01 0.27 4.83 -3.71 -0.02 0.25 16 6 C 0.07 1.27 7.01 37.21 0.26 1.54 16 7 O -0.40 -9.41 10.83 -35.23 -0.38 -9.79 16 8 C 0.07 1.80 6.09 37.20 0.23 2.03 16 9 C 0.19 4.71 1.57 -68.75 -0.11 4.60 16 10 H 0.02 0.47 6.63 -51.93 -0.34 0.12 16 11 C -0.51 -13.61 7.63 -34.44 -0.26 -13.87 16 12 H 0.07 1.76 6.79 -52.48 -0.36 1.41 16 13 C 0.06 1.63 5.33 -17.82 -0.10 1.54 16 14 N -0.89 -25.20 11.78 55.43 0.65 -24.54 16 15 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 20 H 0.06 1.39 6.65 -51.93 -0.35 1.04 16 21 H 0.04 0.79 6.40 -51.93 -0.33 0.46 16 22 H 0.09 2.03 6.22 -51.93 -0.32 1.71 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.04 0.66 6.75 -51.93 -0.35 0.31 16 26 H 0.03 0.65 6.39 -51.93 -0.33 0.32 16 27 H 0.07 1.11 6.42 -51.93 -0.33 0.78 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.11 3.07 6.62 -51.93 -0.34 2.72 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 246.54 15.07 3.72 3.72 Total: -1.00 -28.17 246.54 -6.29 -34.46 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.73 Total: 0.07 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 0.46 Total: -7.42 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.34 Total: -37.00 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.38 Total: -9.79 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.17 -6.29 -34.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221453880.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.484 kcal (2) G-P(sol) polarization free energy of solvation -28.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds