Wall clock time and date at job start Mon Mar 30 2020 02:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99459 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99547 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47100 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47297 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.48506 * 305.00378 * 12 11 10 14 14 C 1.53087 * 109.48106 * 184.97869 * 12 11 10 15 15 C 1.53183 * 109.16548 * 182.42287 * 14 12 11 16 16 C 1.53180 * 109.04541 * 56.96085 * 15 14 12 17 17 C 1.53094 * 109.16405 * 303.03149 * 16 15 14 18 18 O 1.42900 * 109.41542 * 57.60459 * 17 16 15 19 19 H 0.96993 * 120.00007 * 179.97438 * 1 2 3 20 20 H 0.96998 * 120.00268 * 0.02562 * 9 7 2 21 21 H 1.08994 * 109.47239 * 300.00354 * 10 9 7 22 22 H 1.08999 * 109.47211 * 60.00448 * 10 9 7 23 23 H 1.08996 * 109.47237 * 300.00825 * 11 10 9 24 24 H 1.08999 * 109.46641 * 60.00199 * 11 10 9 25 25 H 1.09008 * 109.52568 * 302.31503 * 14 12 11 26 26 H 1.08998 * 109.52247 * 62.50300 * 14 12 11 27 27 H 1.09003 * 109.53258 * 297.09717 * 15 14 12 28 28 H 1.09000 * 109.62061 * 176.88343 * 15 14 12 29 29 H 1.08996 * 109.52113 * 183.12399 * 16 15 14 30 30 H 1.08999 * 109.57141 * 62.96535 * 16 15 14 31 31 H 1.08998 * 109.48085 * 297.62363 * 17 16 15 32 32 H 1.08998 * 109.48042 * 177.59264 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0008 12 6 1.8288 -6.1447 -0.0026 13 1 2.5198 -6.1644 -0.8454 14 6 0.8387 -7.3056 -0.1270 15 6 1.6063 -8.6299 -0.0672 16 6 2.4066 -8.6853 1.2378 17 6 3.3362 -7.4709 1.3092 18 8 2.5615 -6.2737 1.2175 19 1 -0.4850 -0.8400 -0.0004 20 1 0.3556 -2.3880 -0.0005 21 1 2.6840 -3.7141 -0.8921 22 1 2.6853 -3.7149 0.8878 23 1 0.4381 -4.7621 0.8898 24 1 0.4362 -4.7617 -0.8901 25 1 0.1221 -7.2629 0.6934 26 1 0.3101 -7.2334 -1.0775 27 1 2.2875 -8.6949 -0.9156 28 1 0.9033 -9.4623 -0.0995 29 1 2.9992 -9.5997 1.2631 30 1 1.7227 -8.6708 2.0864 31 1 4.0468 -7.5082 0.4836 32 1 3.8771 -7.4824 2.2554 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223902868.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:46 Heat of formation + Delta-G solvation = -79.873038 kcal Electronic energy + Delta-G solvation = -12817.902388 eV Core-core repulsion = 10583.944865 eV Total energy + Delta-G solvation = -2233.957524 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.43435 -37.26710 -34.62547 -34.55128 -32.34518 -29.39941 -26.26025 -25.16337 -23.91206 -22.36536 -21.14232 -19.42110 -17.47783 -16.96866 -16.76403 -15.85389 -15.55134 -15.46298 -15.15976 -14.95097 -14.46872 -13.61391 -13.25578 -12.86139 -12.69627 -12.56095 -12.38146 -12.09679 -11.92623 -11.86942 -11.64821 -11.35281 -11.12199 -10.95944 -10.34250 -9.15463 -8.44935 -5.38299 1.57388 1.69108 1.83881 2.69686 2.84231 3.36426 3.52947 3.85199 3.93309 3.97480 4.02922 4.14721 4.36768 4.40815 4.46254 4.55439 4.69575 4.74797 4.87056 4.93226 5.05695 5.09082 5.15340 5.19430 5.24698 5.38998 5.54251 6.34969 6.45721 7.05864 7.95975 8.07510 9.07606 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.082827 B = 0.006222 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.972430 B = 4499.169128 C = 4716.924100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.104 4.104 3 Si 1.135 2.865 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.342 4.342 8 H 0.064 0.936 9 N -0.760 5.760 10 C 0.162 3.838 11 C -0.109 4.109 12 C 0.099 3.901 13 H 0.061 0.939 14 C -0.147 4.147 15 C -0.120 4.120 16 C -0.152 4.152 17 C 0.050 3.950 18 O -0.405 6.405 19 H 0.244 0.756 20 H 0.361 0.639 21 H 0.016 0.984 22 H 0.013 0.987 23 H 0.058 0.942 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.940 -18.690 -0.124 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.295 4.295 3 Si 0.958 3.042 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.473 4.473 8 H 0.082 0.918 9 N -0.405 5.405 10 C 0.036 3.964 11 C -0.147 4.147 12 C 0.041 3.959 13 H 0.079 0.921 14 C -0.185 4.185 15 C -0.157 4.157 16 C -0.190 4.190 17 C -0.026 4.026 18 O -0.325 6.325 19 H 0.054 0.946 20 H 0.193 0.807 21 H 0.034 0.966 22 H 0.031 0.969 23 H 0.077 0.923 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.050 -16.942 0.014 17.679 hybrid contribution -0.286 -1.736 -0.068 1.761 sum 4.763 -18.678 -0.054 19.276 Atomic orbital electron populations 1.70958 1.07121 1.27879 1.56174 1.27373 0.97154 1.04806 1.00135 0.82555 0.73497 0.71135 0.77000 1.20967 1.21448 1.19803 1.20464 0.92389 0.87275 1.47184 0.91819 1.42634 1.04877 1.02205 1.90811 1.20635 0.94105 0.84519 0.97159 1.21672 0.97825 0.92747 1.02428 1.22016 0.93061 0.93975 0.86874 0.92121 1.22185 0.98299 0.94771 1.03219 1.21609 0.99465 0.96813 0.97858 1.22174 0.99438 0.98891 0.98464 1.22789 0.93104 0.84042 1.02715 1.87974 1.63328 1.42070 1.39147 0.94592 0.80694 0.96607 0.96852 0.92287 0.89875 0.91715 0.89782 0.91116 0.89896 0.88761 0.91738 0.92673 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.24 13.70 21.65 0.30 -62.94 16 2 C -0.10 -6.32 5.50 84.86 0.47 -5.85 16 3 Si 1.13 53.82 29.92 68.60 2.05 55.88 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.34 -20.72 9.99 84.03 0.84 -19.88 16 8 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 9 N -0.76 -42.14 5.60 -343.46 -1.92 -44.06 16 10 C 0.16 7.35 6.16 86.38 0.53 7.88 16 11 C -0.11 -3.86 5.04 30.59 0.15 -3.70 16 12 C 0.10 2.83 2.64 30.62 0.08 2.91 16 13 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 14 C -0.15 -3.23 5.42 30.68 0.17 -3.07 16 15 C -0.12 -2.04 6.03 30.72 0.19 -1.85 16 16 C -0.15 -2.60 6.14 30.69 0.19 -2.42 16 17 C 0.05 1.08 6.84 72.01 0.49 1.58 16 18 O -0.41 -12.62 9.94 -148.98 -1.48 -14.10 16 19 H 0.24 15.80 6.77 -92.71 -0.63 15.17 16 20 H 0.36 20.31 6.50 -92.71 -0.60 19.70 16 21 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 22 H 0.01 0.65 7.82 -2.39 -0.02 0.63 16 23 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 25 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -71.26 260.86 2.67 -68.59 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.62 Total: 21.03 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: 3.11 Total: -24.40 kcal Atomic # 7 Polarization: -105.38 SS G_CDS: -1.63 Total: -107.00 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -1.48 Total: -14.10 kcal Atomic # 14 Polarization: 53.82 SS G_CDS: 2.05 Total: 55.88 kcal Total: -71.26 2.67 -68.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223902868.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.281 kcal (2) G-P(sol) polarization free energy of solvation -71.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds