Wall clock time and date at job start Mon Mar 30 2020 02:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99741 * 2 1 4 4 H 1.48499 * 109.47195 * 239.99746 * 3 2 1 5 5 H 1.48506 * 109.47064 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46974 * 119.99860 * 3 2 1 7 7 C 1.38814 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99684 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 H 1.09004 * 109.48256 * 54.97573 * 12 11 10 14 14 C 1.53087 * 109.48289 * 175.00301 * 12 11 10 15 15 C 1.53185 * 109.16391 * 177.59219 * 14 12 11 16 16 C 1.53177 * 109.03539 * 303.01763 * 15 14 12 17 17 C 1.53092 * 109.16300 * 56.97971 * 16 15 14 18 18 O 1.42901 * 109.41477 * 302.39322 * 17 16 15 19 19 H 0.96993 * 120.00311 * 359.97438 * 1 2 3 20 20 H 0.97005 * 119.99550 * 0.02562 * 9 7 2 21 21 H 1.09001 * 109.46813 * 60.00266 * 10 9 7 22 22 H 1.08992 * 109.47397 * 300.00328 * 10 9 7 23 23 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 24 24 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 25 25 H 1.08997 * 109.52316 * 297.49428 * 14 12 11 26 26 H 1.09000 * 109.52661 * 57.62113 * 14 12 11 27 27 H 1.08994 * 109.54177 * 62.88603 * 15 14 12 28 28 H 1.09000 * 109.53955 * 183.06240 * 15 14 12 29 29 H 1.09004 * 109.51952 * 176.88571 * 16 15 14 30 30 H 1.08997 * 109.52300 * 297.01510 * 16 15 14 31 31 H 1.09002 * 109.47772 * 62.37497 * 17 16 15 32 32 H 1.08994 * 109.47987 * 182.39285 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6568 -0.0005 11 6 1.0640 -4.8197 0.0001 12 6 1.8290 -6.1447 0.0008 13 1 2.5216 -6.1642 0.8423 14 6 0.8392 -7.3057 0.1271 15 6 1.6070 -8.6299 0.0665 16 6 2.4046 -8.6856 -1.2401 17 6 3.3339 -7.4712 -1.3137 18 8 2.5593 -6.2739 -1.2208 19 1 -0.4850 0.8400 0.0004 20 1 0.3556 -2.3881 -0.0005 21 1 2.6849 -3.7144 0.8895 22 1 2.6849 -3.7145 -0.8904 23 1 0.4376 -4.7618 0.8903 24 1 0.4371 -4.7622 -0.8897 25 1 0.3125 -7.2333 1.0786 26 1 0.1206 -7.2624 -0.6913 27 1 2.2898 -8.6945 0.9136 28 1 0.9030 -9.4613 0.1012 29 1 2.9973 -9.6000 -1.2663 30 1 1.7182 -8.6719 -2.0867 31 1 4.0463 -7.5082 -0.4894 32 1 3.8731 -7.4830 -2.2608 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223902917.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:48 Heat of formation + Delta-G solvation = -57.182365 kcal Electronic energy + Delta-G solvation = -12784.181431 eV Core-core repulsion = 10551.207849 eV Total energy + Delta-G solvation = -2232.973582 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.31448 -35.08870 -33.56134 -32.71048 -30.67067 -28.00407 -24.89057 -23.73516 -22.20529 -20.69979 -20.14889 -17.00432 -16.26763 -15.86976 -14.73874 -14.52164 -14.38170 -13.70454 -13.41270 -13.18332 -12.87526 -12.61748 -11.98580 -11.38491 -11.20107 -10.94417 -10.87996 -10.67155 -10.58556 -10.50864 -10.18192 -9.92608 -9.59720 -9.23786 -8.76542 -6.81344 -5.67690 -2.95496 3.50310 3.53727 3.55500 3.95562 4.63490 4.75774 4.77726 4.84550 5.00197 5.24758 5.38113 5.48136 5.61518 5.65316 5.68410 5.79300 5.83353 5.92003 6.00125 6.07092 6.17296 6.34983 6.45733 6.47325 6.97186 7.08047 7.46547 7.78241 8.51966 9.62316 10.22253 10.57150 11.55667 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.082988 B = 0.006191 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.317111 B = 4521.595956 C = 4738.032119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.017 4.017 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.119 4.119 12 C 0.095 3.905 13 H 0.056 0.944 14 C -0.151 4.151 15 C -0.122 4.122 16 C -0.156 4.156 17 C 0.059 3.941 18 O -0.371 6.371 19 H 0.255 0.745 20 H 0.383 0.617 21 H 0.014 0.986 22 H 0.027 0.973 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.617 -17.425 -0.217 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.212 4.212 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.379 5.379 10 C 0.028 3.972 11 C -0.156 4.156 12 C 0.037 3.963 13 H 0.074 0.926 14 C -0.189 4.189 15 C -0.160 4.160 16 C -0.194 4.194 17 C -0.018 4.018 18 O -0.290 6.290 19 H 0.064 0.936 20 H 0.216 0.784 21 H 0.032 0.968 22 H 0.045 0.955 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.740 -17.156 -0.361 17.563 hybrid contribution 0.153 0.641 0.211 0.692 sum 3.893 -16.515 -0.149 16.968 Atomic orbital electron populations 1.69652 1.05112 1.25635 1.58191 1.24735 0.95530 0.97644 1.03320 0.86251 0.78483 0.83552 0.77828 1.21289 1.21710 1.21334 1.19225 0.91040 0.84279 1.42178 0.91270 1.42380 1.05846 1.00168 1.89533 1.20603 0.93468 0.85147 0.97975 1.21769 0.98681 0.92518 1.02665 1.22111 0.92562 0.94833 0.86779 0.92593 1.22230 0.98956 0.94786 1.02899 1.21588 0.99132 0.97727 0.97521 1.22195 0.99659 0.98872 0.98675 1.22512 0.92819 0.84665 1.01769 1.88033 1.62635 1.39648 1.38721 0.93556 0.78413 0.96837 0.95471 0.90691 0.91145 0.90916 0.91021 0.92000 0.91790 0.91341 0.91148 0.93529 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.37 13.06 55.49 0.72 -28.65 16 2 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 3 Si 0.91 23.16 29.55 -169.99 -5.02 18.14 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.74 -19.99 5.60 -59.91 -0.34 -20.32 16 10 C 0.16 3.44 6.16 -4.04 -0.02 3.42 16 11 C -0.12 -2.10 5.04 -26.73 -0.13 -2.24 16 12 C 0.10 1.41 2.64 -26.69 -0.07 1.34 16 13 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.15 -1.81 5.42 -26.59 -0.14 -1.95 16 15 C -0.12 -1.22 6.03 -26.54 -0.16 -1.38 16 16 C -0.16 -1.55 6.14 -26.59 -0.16 -1.71 16 17 C 0.06 0.70 6.84 37.21 0.25 0.95 16 18 O -0.37 -5.87 9.94 -35.23 -0.35 -6.22 16 19 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 20 H 0.38 10.77 7.67 -40.82 -0.31 10.46 16 21 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 22 H 0.03 0.63 7.83 -51.93 -0.41 0.23 16 23 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 24 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 262.57 15.07 3.96 3.96 Total: -1.00 -32.16 262.57 -7.06 -39.22 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.34 Total: 3.20 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -0.69 Total: -9.31 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.39 Total: -48.97 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.35 Total: -6.22 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.16 -7.06 -39.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223902917.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.966 kcal (2) G-P(sol) polarization free energy of solvation -32.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds