Wall clock time and date at job start Mon Mar 30 2020 02:01:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86802 * 119.99741 * 2 1
4 4 H 1.48499 * 109.47195 * 239.99746 * 3 2 1
5 5 H 1.48506 * 109.47064 * 0.02562 * 3 2 1
6 6 H 1.48506 * 109.46974 * 119.99860 * 3 2 1
7 7 C 1.38814 * 120.00164 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99684 * 180.02562 * 7 2 1
9 9 N 1.36936 * 120.00175 * 359.97438 * 7 2 1
10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2
11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 7
12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9
13 13 H 1.09004 * 109.48256 * 54.97573 * 12 11 10
14 14 C 1.53087 * 109.48289 * 175.00301 * 12 11 10
15 15 C 1.53185 * 109.16391 * 177.59219 * 14 12 11
16 16 C 1.53177 * 109.03539 * 303.01763 * 15 14 12
17 17 C 1.53092 * 109.16300 * 56.97971 * 16 15 14
18 18 O 1.42901 * 109.41477 * 302.39322 * 17 16 15
19 19 H 0.96993 * 120.00311 * 359.97438 * 1 2 3
20 20 H 0.97005 * 119.99550 * 0.02562 * 9 7 2
21 21 H 1.09001 * 109.46813 * 60.00266 * 10 9 7
22 22 H 1.08992 * 109.47397 * 300.00328 * 10 9 7
23 23 H 1.09002 * 109.47398 * 300.00326 * 11 10 9
24 24 H 1.09001 * 109.47194 * 60.00507 * 11 10 9
25 25 H 1.08997 * 109.52316 * 297.49428 * 14 12 11
26 26 H 1.09000 * 109.52661 * 57.62113 * 14 12 11
27 27 H 1.08994 * 109.54177 * 62.88603 * 15 14 12
28 28 H 1.09000 * 109.53955 * 183.06240 * 15 14 12
29 29 H 1.09004 * 109.51952 * 176.88571 * 16 15 14
30 30 H 1.08997 * 109.52300 * 297.01510 * 16 15 14
31 31 H 1.09002 * 109.47772 * 62.37497 * 17 16 15
32 32 H 1.08994 * 109.47987 * 182.39285 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.1039 1.6965 -1.2124
5 1 1.2850 2.7465 0.0006
6 1 3.1039 1.6965 1.2126
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2021 -0.0001
9 7 1.3257 -2.3881 -0.0005
10 6 2.0583 -3.6568 -0.0005
11 6 1.0640 -4.8197 0.0001
12 6 1.8290 -6.1447 0.0008
13 1 2.5216 -6.1642 0.8423
14 6 0.8392 -7.3057 0.1271
15 6 1.6070 -8.6299 0.0665
16 6 2.4046 -8.6856 -1.2401
17 6 3.3339 -7.4712 -1.3137
18 8 2.5593 -6.2739 -1.2208
19 1 -0.4850 0.8400 0.0004
20 1 0.3556 -2.3881 -0.0005
21 1 2.6849 -3.7144 0.8895
22 1 2.6849 -3.7145 -0.8904
23 1 0.4376 -4.7618 0.8903
24 1 0.4371 -4.7622 -0.8897
25 1 0.3125 -7.2333 1.0786
26 1 0.1206 -7.2624 -0.6913
27 1 2.2898 -8.6945 0.9136
28 1 0.9030 -9.4613 0.1012
29 1 2.9973 -9.6000 -1.2663
30 1 1.7182 -8.6719 -2.0867
31 1 4.0463 -7.5082 -0.4894
32 1 3.8731 -7.4830 -2.2608
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000223902917.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:01:48
Heat of formation + Delta-G solvation = -57.182365 kcal
Electronic energy + Delta-G solvation = -12784.181431 eV
Core-core repulsion = 10551.207849 eV
Total energy + Delta-G solvation = -2232.973582 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 199.131 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-39.31448 -35.08870 -33.56134 -32.71048 -30.67067 -28.00407 -24.89057 -23.73516
-22.20529 -20.69979 -20.14889 -17.00432 -16.26763 -15.86976 -14.73874 -14.52164
-14.38170 -13.70454 -13.41270 -13.18332 -12.87526 -12.61748 -11.98580 -11.38491
-11.20107 -10.94417 -10.87996 -10.67155 -10.58556 -10.50864 -10.18192 -9.92608
-9.59720 -9.23786 -8.76542 -6.81344 -5.67690 -2.95496 3.50310 3.53727
3.55500 3.95562 4.63490 4.75774 4.77726 4.84550 5.00197 5.24758
5.38113 5.48136 5.61518 5.65316 5.68410 5.79300 5.83353 5.92003
6.00125 6.07092 6.17296 6.34983 6.45733 6.47325 6.97186 7.08047
7.46547 7.78241 8.51966 9.62316 10.22253 10.57150 11.55667
Molecular weight = 199.13amu
Principal moments of inertia in cm(-1)
A = 0.082988 B = 0.006191 C = 0.005908
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 337.317111 B = 4521.595956 C = 4738.032119
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.937 5.937
2 C -0.017 4.017
3 Si 0.908 3.092
4 H -0.286 1.286
5 H -0.291 1.291
6 H -0.287 1.287
7 C -0.236 4.236
8 H 0.069 0.931
9 N -0.735 5.735
10 C 0.155 3.845
11 C -0.119 4.119
12 C 0.095 3.905
13 H 0.056 0.944
14 C -0.151 4.151
15 C -0.122 4.122
16 C -0.156 4.156
17 C 0.059 3.941
18 O -0.371 6.371
19 H 0.255 0.745
20 H 0.383 0.617
21 H 0.014 0.986
22 H 0.027 0.973
23 H 0.075 0.925
24 H 0.070 0.930
25 H 0.072 0.928
26 H 0.071 0.929
27 H 0.061 0.939
28 H 0.063 0.937
29 H 0.068 0.932
30 H 0.070 0.930
31 H 0.046 0.954
32 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.617 -17.425 -0.217 17.798
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.586 5.586
2 C -0.212 4.212
3 Si 0.739 3.261
4 H -0.213 1.213
5 H -0.217 1.217
6 H -0.213 1.213
7 C -0.367 4.367
8 H 0.087 0.913
9 N -0.379 5.379
10 C 0.028 3.972
11 C -0.156 4.156
12 C 0.037 3.963
13 H 0.074 0.926
14 C -0.189 4.189
15 C -0.160 4.160
16 C -0.194 4.194
17 C -0.018 4.018
18 O -0.290 6.290
19 H 0.064 0.936
20 H 0.216 0.784
21 H 0.032 0.968
22 H 0.045 0.955
23 H 0.093 0.907
24 H 0.089 0.911
25 H 0.091 0.909
26 H 0.090 0.910
27 H 0.080 0.920
28 H 0.082 0.918
29 H 0.087 0.913
30 H 0.089 0.911
31 H 0.065 0.935
32 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges 3.740 -17.156 -0.361 17.563
hybrid contribution 0.153 0.641 0.211 0.692
sum 3.893 -16.515 -0.149 16.968
Atomic orbital electron populations
1.69652 1.05112 1.25635 1.58191 1.24735 0.95530 0.97644 1.03320
0.86251 0.78483 0.83552 0.77828 1.21289 1.21710 1.21334 1.19225
0.91040 0.84279 1.42178 0.91270 1.42380 1.05846 1.00168 1.89533
1.20603 0.93468 0.85147 0.97975 1.21769 0.98681 0.92518 1.02665
1.22111 0.92562 0.94833 0.86779 0.92593 1.22230 0.98956 0.94786
1.02899 1.21588 0.99132 0.97727 0.97521 1.22195 0.99659 0.98872
0.98675 1.22512 0.92819 0.84665 1.01769 1.88033 1.62635 1.39648
1.38721 0.93556 0.78413 0.96837 0.95471 0.90691 0.91145 0.90916
0.91021 0.92000 0.91790 0.91341 0.91148 0.93529 0.89208
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -29.37 13.06 55.49 0.72 -28.65 16
2 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16
3 Si 0.91 23.16 29.55 -169.99 -5.02 18.14 16
4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16
6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
7 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16
8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16
9 N -0.74 -19.99 5.60 -59.91 -0.34 -20.32 16
10 C 0.16 3.44 6.16 -4.04 -0.02 3.42 16
11 C -0.12 -2.10 5.04 -26.73 -0.13 -2.24 16
12 C 0.10 1.41 2.64 -26.69 -0.07 1.34 16
13 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
14 C -0.15 -1.81 5.42 -26.59 -0.14 -1.95 16
15 C -0.12 -1.22 6.03 -26.54 -0.16 -1.38 16
16 C -0.16 -1.55 6.14 -26.59 -0.16 -1.71 16
17 C 0.06 0.70 6.84 37.21 0.25 0.95 16
18 O -0.37 -5.87 9.94 -35.23 -0.35 -6.22 16
19 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16
20 H 0.38 10.77 7.67 -40.82 -0.31 10.46 16
21 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16
22 H 0.03 0.63 7.83 -51.93 -0.41 0.23 16
23 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16
24 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16
25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16
28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16
30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16
32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16
LS Contribution 262.57 15.07 3.96 3.96
Total: -1.00 -32.16 262.57 -7.06 -39.22
By element:
Atomic # 1 Polarization: 8.54 SS G_CDS: -5.34 Total: 3.20 kcal
Atomic # 6 Polarization: -8.62 SS G_CDS: -0.69 Total: -9.31 kcal
Atomic # 7 Polarization: -49.36 SS G_CDS: 0.39 Total: -48.97 kcal
Atomic # 8 Polarization: -5.87 SS G_CDS: -0.35 Total: -6.22 kcal
Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal
Total LS contribution 3.96 Total: 3.96 kcal
Total: -32.16 -7.06 -39.22 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000223902917.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.966 kcal
(2) G-P(sol) polarization free energy of solvation -32.160 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.127 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.216 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.182 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds