Wall clock time and date at job start Mon Mar 30 2020 02:01:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86802 * 119.99741 * 2 1
4 4 H 1.48499 * 109.47195 * 239.99746 * 3 2 1
5 5 H 1.48506 * 109.47064 * 0.02562 * 3 2 1
6 6 H 1.48506 * 109.46974 * 119.99860 * 3 2 1
7 7 C 1.38814 * 120.00164 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99684 * 180.02562 * 7 2 1
9 9 N 1.36936 * 120.00175 * 359.97438 * 7 2 1
10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2
11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 7
12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9
13 13 H 1.09004 * 109.48256 * 54.97573 * 12 11 10
14 14 C 1.53087 * 109.48289 * 175.00301 * 12 11 10
15 15 C 1.53185 * 109.16391 * 177.59219 * 14 12 11
16 16 C 1.53177 * 109.03539 * 303.01763 * 15 14 12
17 17 C 1.53092 * 109.16300 * 56.97971 * 16 15 14
18 18 O 1.42901 * 109.41477 * 302.39322 * 17 16 15
19 19 H 0.96993 * 120.00311 * 359.97438 * 1 2 3
20 20 H 0.97005 * 119.99550 * 0.02562 * 9 7 2
21 21 H 1.09001 * 109.46813 * 60.00266 * 10 9 7
22 22 H 1.08992 * 109.47397 * 300.00328 * 10 9 7
23 23 H 1.09002 * 109.47398 * 300.00326 * 11 10 9
24 24 H 1.09001 * 109.47194 * 60.00507 * 11 10 9
25 25 H 1.08997 * 109.52316 * 297.49428 * 14 12 11
26 26 H 1.09000 * 109.52661 * 57.62113 * 14 12 11
27 27 H 1.08994 * 109.54177 * 62.88603 * 15 14 12
28 28 H 1.09000 * 109.53955 * 183.06240 * 15 14 12
29 29 H 1.09004 * 109.51952 * 176.88571 * 16 15 14
30 30 H 1.08997 * 109.52300 * 297.01510 * 16 15 14
31 31 H 1.09002 * 109.47772 * 62.37497 * 17 16 15
32 32 H 1.08994 * 109.47987 * 182.39285 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.1039 1.6965 -1.2124
5 1 1.2850 2.7465 0.0006
6 1 3.1039 1.6965 1.2126
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2021 -0.0001
9 7 1.3257 -2.3881 -0.0005
10 6 2.0583 -3.6568 -0.0005
11 6 1.0640 -4.8197 0.0001
12 6 1.8290 -6.1447 0.0008
13 1 2.5216 -6.1642 0.8423
14 6 0.8392 -7.3057 0.1271
15 6 1.6070 -8.6299 0.0665
16 6 2.4046 -8.6856 -1.2401
17 6 3.3339 -7.4712 -1.3137
18 8 2.5593 -6.2739 -1.2208
19 1 -0.4850 0.8400 0.0004
20 1 0.3556 -2.3881 -0.0005
21 1 2.6849 -3.7144 0.8895
22 1 2.6849 -3.7145 -0.8904
23 1 0.4376 -4.7618 0.8903
24 1 0.4371 -4.7622 -0.8897
25 1 0.3125 -7.2333 1.0786
26 1 0.1206 -7.2624 -0.6913
27 1 2.2898 -8.6945 0.9136
28 1 0.9030 -9.4613 0.1012
29 1 2.9973 -9.6000 -1.2663
30 1 1.7182 -8.6719 -2.0867
31 1 4.0463 -7.5082 -0.4894
32 1 3.8731 -7.4830 -2.2608
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000223902917.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:01:47
Heat of formation + Delta-G solvation = -78.699630 kcal
Electronic energy + Delta-G solvation = -12785.114489 eV
Core-core repulsion = 10551.207849 eV
Total energy + Delta-G solvation = -2233.906641 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 199.131 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-40.36964 -36.96085 -34.50833 -34.41500 -32.43574 -29.51763 -26.41067 -25.09358
-23.71474 -22.25405 -21.08129 -19.18243 -17.40547 -17.00003 -16.53048 -15.72631
-15.49751 -15.22376 -15.06232 -14.92210 -14.33833 -13.55559 -13.28028 -12.93430
-12.82005 -12.50098 -12.35861 -12.17377 -11.98414 -11.86853 -11.85134 -11.48681
-11.11976 -10.93589 -10.28673 -9.02233 -7.96234 -5.26177 1.46467 1.50891
1.57145 2.55797 2.90679 3.36792 3.64774 3.92238 3.98418 4.06909
4.13012 4.22917 4.45341 4.50089 4.56586 4.63469 4.77244 4.83801
4.92074 4.98313 5.10799 5.14514 5.21834 5.29435 5.34755 5.44234
5.46867 6.26088 6.41254 7.31617 8.06839 8.31957 9.27499
Molecular weight = 199.13amu
Principal moments of inertia in cm(-1)
A = 0.082988 B = 0.006191 C = 0.005908
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 337.317111 B = 4521.595956 C = 4738.032119
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.971 5.971
2 C -0.076 4.076
3 Si 0.979 3.021
4 H -0.278 1.278
5 H -0.291 1.291
6 H -0.276 1.276
7 C -0.253 4.253
8 H 0.073 0.927
9 N -0.749 5.749
10 C 0.157 3.843
11 C -0.109 4.109
12 C 0.098 3.902
13 H 0.061 0.939
14 C -0.148 4.148
15 C -0.120 4.120
16 C -0.152 4.152
17 C 0.050 3.950
18 O -0.404 6.404
19 H 0.253 0.747
20 H 0.374 0.626
21 H 0.017 0.983
22 H 0.014 0.986
23 H 0.082 0.918
24 H 0.058 0.942
25 H 0.083 0.917
26 H 0.064 0.936
27 H 0.070 0.930
28 H 0.081 0.919
29 H 0.093 0.907
30 H 0.063 0.937
31 H 0.055 0.945
32 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.471 -18.501 0.128 19.034
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.622 5.622
2 C -0.268 4.268
3 Si 0.807 3.193
4 H -0.204 1.204
5 H -0.217 1.217
6 H -0.201 1.201
7 C -0.385 4.385
8 H 0.091 0.909
9 N -0.391 5.391
10 C 0.031 3.969
11 C -0.146 4.146
12 C 0.041 3.959
13 H 0.079 0.921
14 C -0.185 4.185
15 C -0.157 4.157
16 C -0.190 4.190
17 C -0.026 4.026
18 O -0.324 6.324
19 H 0.062 0.938
20 H 0.205 0.795
21 H 0.035 0.965
22 H 0.032 0.968
23 H 0.101 0.899
24 H 0.077 0.923
25 H 0.102 0.898
26 H 0.082 0.918
27 H 0.089 0.911
28 H 0.100 0.900
29 H 0.111 0.889
30 H 0.082 0.918
31 H 0.073 0.927
32 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges 4.624 -18.271 -0.015 18.847
hybrid contribution -0.074 0.928 0.080 0.934
sum 4.550 -17.343 0.065 17.930
Atomic orbital electron populations
1.69816 1.06699 1.26347 1.59296 1.25640 0.96503 1.01288 1.03347
0.85136 0.77204 0.78685 0.78274 1.20386 1.21714 1.20145 1.19640
0.91513 0.85536 1.41813 0.90896 1.42607 1.05647 1.01361 1.89527
1.20701 0.94156 0.84866 0.97223 1.21661 0.97858 0.92673 1.02451
1.22031 0.93056 0.94059 0.86799 0.92072 1.22188 0.98340 0.94799
1.03204 1.21607 0.99449 0.96853 0.97836 1.22173 0.99450 0.98907
0.98450 1.22776 0.93095 0.84075 1.02679 1.87976 1.63402 1.41956
1.39096 0.93821 0.79451 0.96473 0.96753 0.89910 0.92340 0.89820
0.91756 0.91125 0.90010 0.88856 0.91772 0.92673 0.88306
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -61.52 13.06 21.65 0.28 -61.24 16
2 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16
3 Si 0.98 47.57 29.55 68.60 2.03 49.60 16
4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16
5 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16
6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16
7 C -0.25 -15.10 9.99 84.03 0.84 -14.26 16
8 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16
9 N -0.75 -41.33 5.60 -343.46 -1.92 -43.26 16
10 C 0.16 7.01 6.16 86.38 0.53 7.54 16
11 C -0.11 -3.85 5.04 30.59 0.15 -3.70 16
12 C 0.10 2.81 2.64 30.62 0.08 2.89 16
13 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16
14 C -0.15 -3.27 5.42 30.69 0.17 -3.10 16
15 C -0.12 -2.05 6.03 30.72 0.19 -1.87 16
16 C -0.15 -2.62 6.14 30.68 0.19 -2.43 16
17 C 0.05 1.09 6.84 72.01 0.49 1.58 16
18 O -0.40 -12.53 9.94 -148.98 -1.48 -14.01 16
19 H 0.25 15.42 8.31 -92.71 -0.77 14.64 16
20 H 0.37 21.54 7.67 -92.70 -0.71 20.83 16
21 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16
22 H 0.01 0.68 7.83 -2.39 -0.02 0.66 16
23 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16
24 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16
25 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16
26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16
27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16
29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16
30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16
31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16
32 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16
Total: -1.00 -68.20 262.57 2.37 -65.83
By element:
Atomic # 1 Polarization: 20.12 SS G_CDS: 0.36 Total: 20.48 kcal
Atomic # 6 Polarization: -20.52 SS G_CDS: 3.11 Total: -17.41 kcal
Atomic # 7 Polarization: -102.85 SS G_CDS: -1.64 Total: -104.49 kcal
Atomic # 8 Polarization: -12.53 SS G_CDS: -1.48 Total: -14.01 kcal
Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal
Total: -68.20 2.37 -65.83 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000223902917.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.870 kcal
(2) G-P(sol) polarization free energy of solvation -68.204 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.074 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.829 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.700 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds