Wall clock time and date at job start Mon Mar 30 2020 01:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00342 * 2 1 4 4 H 1.48497 * 109.47650 * 240.00031 * 3 2 1 5 5 H 1.48500 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46784 * 120.00197 * 3 2 1 7 7 C 1.38817 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00149 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00025 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47094 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47514 * 305.00368 * 11 10 9 13 13 C 1.53002 * 109.46637 * 65.00239 * 11 10 9 14 14 C 1.52997 * 109.46817 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47452 * 300.00239 * 14 13 11 16 16 C 1.52999 * 109.47159 * 59.99536 * 15 14 13 17 17 H 1.09002 * 109.46716 * 60.00455 * 16 15 14 18 18 O 1.42895 * 109.47162 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47317 * 300.00546 * 16 15 14 20 20 H 0.97002 * 119.99299 * 359.97438 * 1 2 3 21 21 H 0.97004 * 119.99616 * 0.02562 * 9 7 2 22 22 H 1.09008 * 109.47071 * 60.00004 * 10 9 7 23 23 H 1.09000 * 109.47025 * 300.00245 * 10 9 7 24 24 H 1.08993 * 109.47662 * 299.99908 * 13 11 10 25 25 H 1.09002 * 109.47075 * 60.00414 * 13 11 10 26 26 H 1.09002 * 109.47153 * 60.00231 * 14 13 11 27 27 H 1.09001 * 109.47289 * 180.02562 * 14 13 11 28 28 H 1.09000 * 109.47360 * 180.02562 * 15 14 13 29 29 H 1.09002 * 109.46935 * 300.00125 * 15 14 13 30 30 H 0.96698 * 114.00355 * 300.00783 * 18 16 15 31 31 H 1.09002 * 109.47153 * 299.99641 * 19 16 15 32 32 H 1.09001 * 109.46832 * 179.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.0636 -4.8197 0.0001 12 1 0.3798 -4.7127 0.8420 13 6 0.2684 -4.8114 -1.3070 14 6 -0.7254 -5.9746 -1.3067 15 6 0.0358 -7.2959 -1.1812 16 6 0.8311 -7.3042 0.1259 17 1 0.1471 -7.1975 0.9679 18 8 1.5415 -8.5384 0.2434 19 6 1.8249 -6.1410 0.1255 20 1 -0.4849 0.8401 0.0004 21 1 0.3555 -2.3880 -0.0005 22 1 2.6846 -3.7146 0.8895 23 1 2.6846 -3.7146 -0.8905 24 1 -0.2735 -3.8700 -1.3967 25 1 0.9523 -4.9186 -2.1490 26 1 -1.4093 -5.8679 -0.4647 27 1 -1.2917 -5.9690 -2.2381 28 1 -0.6723 -8.1246 -1.1814 29 1 0.7197 -7.4026 -2.0232 30 1 0.9729 -9.3205 0.2504 31 1 2.5088 -6.2476 -0.7165 32 1 2.3911 -6.1466 1.0569 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227737151.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:55 Heat of formation + Delta-G solvation = -67.835186 kcal Electronic energy + Delta-G solvation = -12974.636509 eV Core-core repulsion = 10741.200985 eV Total energy + Delta-G solvation = -2233.435523 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.98884 -36.05551 -34.10623 -31.79285 -30.00219 -28.92825 -25.24578 -22.83285 -22.09199 -20.66682 -19.56495 -17.33035 -16.70759 -15.30295 -14.72138 -14.38615 -14.12332 -13.81714 -13.28602 -13.00658 -12.58134 -12.27237 -11.77400 -11.62385 -11.06612 -10.88014 -10.82131 -10.75017 -10.34811 -10.17470 -10.15266 -9.89032 -9.59687 -9.54126 -8.82105 -6.86615 -5.72648 -3.00499 3.47021 3.50924 3.52270 4.19795 4.64743 4.82839 4.87080 5.17947 5.36770 5.38535 5.56819 5.61856 5.67978 5.70977 5.73522 6.00342 6.12722 6.19694 6.30396 6.31799 6.37198 6.46219 6.60636 6.76962 6.90480 7.00624 7.64285 7.73745 8.47015 9.57783 10.16907 10.51875 11.50503 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.073637 B = 0.007046 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.151233 B = 3972.704133 C = 4223.025946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.090 4.090 12 H 0.070 0.930 13 C -0.113 4.113 14 C -0.117 4.117 15 C -0.149 4.149 16 C 0.105 3.895 17 H 0.053 0.947 18 O -0.571 6.571 19 C -0.103 4.103 20 H 0.255 0.745 21 H 0.384 0.616 22 H 0.018 0.982 23 H 0.019 0.981 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.372 0.628 31 H 0.067 0.933 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.900 -14.580 -1.296 14.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.109 4.109 12 H 0.089 0.911 13 C -0.151 4.151 14 C -0.155 4.155 15 C -0.186 4.186 16 C 0.046 3.954 17 H 0.071 0.929 18 O -0.376 6.376 19 C -0.141 4.141 20 H 0.065 0.935 21 H 0.218 0.782 22 H 0.036 0.964 23 H 0.037 0.963 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.219 0.781 31 H 0.086 0.914 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.254 -14.036 -1.287 14.097 hybrid contribution -0.378 0.578 -0.033 0.691 sum -0.632 -13.458 -1.320 13.538 Atomic orbital electron populations 1.69654 1.05103 1.25686 1.58022 1.24732 0.95528 0.97652 1.03198 0.86256 0.78498 0.83541 0.77838 1.21303 1.21705 1.21308 1.19218 0.91041 0.84269 1.42403 0.91276 1.42374 1.05855 0.99954 1.89442 1.20658 0.93157 0.85349 0.97784 1.21265 0.97727 0.93726 0.98192 0.91137 1.21576 0.97733 0.98362 0.97387 1.21511 0.98097 0.94181 1.01713 1.22257 0.99266 0.98186 0.98929 1.21869 0.93357 0.84297 0.95872 0.92893 1.86525 1.38330 1.15920 1.96852 1.21465 0.97586 0.92233 1.02803 0.93523 0.78236 0.96382 0.96310 0.90513 0.92213 0.92016 0.92017 0.92425 0.91343 0.78147 0.91379 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.70 13.06 55.49 0.72 -27.97 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.01 5.33 -59.90 -0.32 -19.33 16 10 C 0.16 3.32 5.65 -4.04 -0.02 3.30 16 11 C -0.09 -1.52 2.23 -90.62 -0.20 -1.72 16 12 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 13 C -0.11 -1.82 5.08 -26.73 -0.14 -1.95 16 14 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 15 C -0.15 -1.72 5.55 -26.73 -0.15 -1.86 16 16 C 0.10 1.32 3.47 -26.73 -0.09 1.23 16 17 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 18 O -0.57 -6.96 13.32 -35.23 -0.47 -7.43 16 19 C -0.10 -1.52 4.85 -26.73 -0.13 -1.65 16 20 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 21 H 0.38 10.35 6.85 -40.82 -0.28 10.07 16 22 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 23 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.08 1.42 7.18 -51.93 -0.37 1.05 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.37 2.81 9.08 45.56 0.41 3.22 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 259.63 15.07 3.91 3.91 Total: -1.00 -31.47 259.63 -6.75 -38.22 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.43 Total: 6.72 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -1.14 Total: -11.87 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.41 Total: -47.30 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.47 Total: -7.43 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.47 -6.75 -38.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227737151.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.615 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds