Wall clock time and date at job start Mon Mar 30 2020 01:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86811 * 119.99764 * 2 1 4 4 H 1.48501 * 109.47280 * 240.00390 * 3 2 1 5 5 H 1.48501 * 109.46676 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46929 * 119.99881 * 3 2 1 7 7 C 1.38811 * 120.00576 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00068 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99791 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99997 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46737 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.47575 * 55.00554 * 11 10 9 13 13 C 1.52996 * 109.47577 * 294.99984 * 11 10 9 14 14 C 1.52997 * 109.47165 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47592 * 60.00300 * 14 13 11 16 16 C 1.53006 * 109.46626 * 300.00035 * 15 14 13 17 17 H 1.09000 * 109.47050 * 299.99699 * 16 15 14 18 18 O 1.42906 * 109.46748 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47164 * 59.99702 * 16 15 14 20 20 H 0.96994 * 120.00409 * 359.97438 * 1 2 3 21 21 H 0.97003 * 119.99761 * 0.02562 * 9 7 2 22 22 H 1.08998 * 109.46601 * 60.00072 * 10 9 7 23 23 H 1.08991 * 109.47119 * 300.00122 * 10 9 7 24 24 H 1.09000 * 109.47054 * 300.00355 * 13 11 10 25 25 H 1.09001 * 109.46997 * 60.00088 * 13 11 10 26 26 H 1.09000 * 109.47140 * 299.99954 * 14 13 11 27 27 H 1.09002 * 109.47045 * 180.02562 * 14 13 11 28 28 H 1.08993 * 109.47839 * 180.02562 * 15 14 13 29 29 H 1.09000 * 109.47160 * 59.99666 * 15 14 13 30 30 H 0.96704 * 113.99354 * 60.00285 * 18 16 15 31 31 H 1.09000 * 109.47140 * 60.00051 * 19 16 15 32 32 H 1.09001 * 109.47230 * 179.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3258 -2.3880 -0.0016 10 6 2.0584 -3.6567 -0.0027 11 6 1.0642 -4.8196 -0.0031 12 1 0.3797 -4.7123 -0.8446 13 6 0.2698 -4.8121 1.3045 14 6 -0.7239 -5.9754 1.3042 15 6 0.0373 -7.2965 1.1777 16 6 0.8317 -7.3041 -0.1300 17 1 0.1472 -7.1971 -0.9715 18 8 1.5432 -8.5378 -0.2479 19 6 1.8254 -6.1408 -0.1298 20 1 -0.4850 0.8400 0.0004 21 1 0.3557 -2.3880 -0.0023 22 1 2.6850 -3.7151 0.8872 23 1 2.6850 -3.7136 -0.8927 24 1 0.9543 -4.9195 2.1460 25 1 -0.2722 -3.8707 1.3949 26 1 -1.4084 -5.8684 0.4627 27 1 -1.2901 -5.9697 2.2356 28 1 -0.6706 -8.1253 1.1771 29 1 0.7218 -7.4035 2.0192 30 1 0.9750 -9.3203 -0.2546 31 1 2.5099 -6.2478 0.7117 32 1 2.3916 -6.1464 -1.0612 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227737154.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:57 Heat of formation + Delta-G solvation = -90.549191 kcal Electronic energy + Delta-G solvation = -12975.714801 eV Core-core repulsion = 10741.294325 eV Total energy + Delta-G solvation = -2234.420476 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.14398 -37.35171 -35.79270 -33.52458 -31.55447 -30.23182 -27.02248 -24.65151 -23.24762 -22.03020 -20.79268 -19.22349 -17.92280 -16.75810 -16.36617 -15.71827 -15.44176 -15.21570 -15.08948 -14.55859 -13.93752 -13.50001 -13.31892 -12.99682 -12.73025 -12.65975 -12.30495 -12.11010 -11.95707 -11.87945 -11.56051 -11.39093 -11.04495 -10.92782 -10.61757 -9.00665 -7.96043 -5.24992 1.46448 1.50018 1.56232 2.55318 3.23202 3.36887 3.74540 3.80461 4.05708 4.11264 4.21534 4.33914 4.44785 4.56876 4.57580 4.65335 4.79653 4.92889 5.02264 5.09214 5.16172 5.24440 5.30366 5.33835 5.45073 5.50629 5.57760 6.26482 6.95366 7.32630 8.08457 8.33321 9.27503 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.073634 B = 0.007047 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.168723 B = 3972.558386 C = 4222.891132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.976 3.024 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.251 4.251 8 H 0.073 0.927 9 N -0.743 5.743 10 C 0.155 3.845 11 C -0.079 4.079 12 H 0.064 0.936 13 C -0.110 4.110 14 C -0.112 4.112 15 C -0.141 4.141 16 C 0.109 3.891 17 H 0.061 0.939 18 O -0.584 6.584 19 C -0.100 4.100 20 H 0.252 0.748 21 H 0.375 0.625 22 H 0.017 0.983 23 H 0.016 0.984 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.394 0.606 31 H 0.064 0.936 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.692 -15.803 1.394 15.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.091 0.909 9 N -0.386 5.386 10 C 0.029 3.971 11 C -0.098 4.098 12 H 0.083 0.917 13 C -0.148 4.148 14 C -0.150 4.150 15 C -0.178 4.178 16 C 0.051 3.949 17 H 0.079 0.921 18 O -0.392 6.392 19 C -0.138 4.138 20 H 0.061 0.939 21 H 0.208 0.792 22 H 0.035 0.965 23 H 0.034 0.966 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.244 0.756 31 H 0.083 0.917 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.025 -15.306 1.385 15.368 hybrid contribution -0.404 0.895 -0.005 0.982 sum -0.429 -14.411 1.380 14.483 Atomic orbital electron populations 1.69807 1.06611 1.26258 1.59356 1.25586 0.96450 1.01132 1.03505 0.85181 0.77217 0.78971 0.78201 1.20377 1.21864 1.20383 1.19629 0.91508 0.85549 1.41615 0.90897 1.42560 1.05664 1.01029 1.89364 1.20817 0.93910 0.85102 0.97283 1.21104 0.96823 0.93336 0.98488 0.91711 1.21507 0.98098 0.98497 0.96686 1.21462 0.97404 0.93476 1.02614 1.22196 0.99465 0.98119 0.98060 1.21718 0.92551 0.83813 0.96838 0.92133 1.86474 1.39332 1.16563 1.96865 1.21375 0.97874 0.92070 1.02461 0.93884 0.79220 0.96514 0.96585 0.92521 0.93697 0.91634 0.90765 0.89432 0.91676 0.75593 0.91720 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.36 13.06 21.65 0.28 -60.08 16 2 C -0.07 -4.38 5.50 84.86 0.47 -3.91 16 3 Si 0.98 46.96 29.55 68.60 2.03 48.98 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 7 C -0.25 -14.57 9.99 84.03 0.84 -13.73 16 8 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.74 -39.39 5.33 -343.47 -1.83 -41.22 16 10 C 0.16 6.60 5.65 86.38 0.49 7.09 16 11 C -0.08 -2.64 2.23 -10.80 -0.02 -2.66 16 12 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 13 C -0.11 -3.52 5.08 30.59 0.16 -3.36 16 14 C -0.11 -2.67 5.92 30.59 0.18 -2.49 16 15 C -0.14 -2.81 5.55 30.60 0.17 -2.64 16 16 C 0.11 2.48 3.47 30.60 0.11 2.58 16 17 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 18 O -0.58 -12.48 13.32 -148.98 -1.98 -14.46 16 19 C -0.10 -2.82 4.85 30.59 0.15 -2.67 16 20 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 21 H 0.38 20.86 6.85 -92.71 -0.64 20.23 16 22 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 23 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.04 1.71 7.18 -2.39 -0.02 1.69 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.39 4.52 9.08 -74.05 -0.67 3.85 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -66.78 259.63 0.81 -65.97 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -0.21 Total: 22.61 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 2.53 Total: -21.81 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -1.55 Total: -101.30 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -1.98 Total: -14.46 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.98 kcal Total: -66.78 0.81 -65.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227737154.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.580 kcal (2) G-P(sol) polarization free energy of solvation -66.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds