Wall clock time and date at job start Mon Mar 30 2020 01:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99815 * 2 1 4 4 H 1.48499 * 109.47357 * 269.99969 * 3 2 1 5 5 H 1.48501 * 109.47177 * 30.00313 * 3 2 1 6 6 H 1.48501 * 109.47279 * 149.99781 * 3 2 1 7 7 C 1.38815 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99877 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99517 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99415 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46786 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47106 * 175.00030 * 11 10 9 13 13 C 1.52998 * 109.47429 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46788 * 299.99799 * 13 12 11 15 15 O 1.42903 * 109.47256 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47329 * 59.99953 * 14 13 12 17 17 C 1.52998 * 109.46901 * 299.99578 * 16 14 13 18 18 H 0.97006 * 120.00016 * 359.97438 * 1 2 3 19 19 H 0.96998 * 120.00434 * 359.97438 * 9 7 2 20 20 H 1.08993 * 109.47641 * 59.99759 * 10 9 7 21 21 H 1.09006 * 109.46910 * 299.99813 * 10 9 7 22 22 H 1.08997 * 109.47655 * 54.99413 * 11 10 9 23 23 H 1.08997 * 109.47366 * 59.99207 * 12 11 10 24 24 H 1.09009 * 109.46785 * 299.99476 * 12 11 10 25 25 H 1.08997 * 109.47384 * 179.97438 * 13 12 11 26 26 H 1.08997 * 109.47329 * 59.99386 * 13 12 11 27 27 H 1.09008 * 109.47201 * 299.99563 * 14 13 12 28 28 H 0.96700 * 114.00311 * 180.02562 * 15 14 13 29 29 H 1.08997 * 109.47215 * 60.00152 * 16 14 13 30 30 H 1.08999 * 109.47164 * 180.02562 * 16 14 13 31 31 H 1.08997 * 109.47655 * 300.00305 * 17 16 14 32 32 H 1.09005 * 109.46908 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 6 1.8248 -6.1411 -0.1269 13 6 0.8306 -7.3041 -0.1269 14 6 0.0359 -7.2956 1.1805 15 8 -0.8922 -8.3821 1.1808 16 6 -0.7250 -5.9742 1.3063 17 6 0.2692 -4.8112 1.3063 18 1 -0.4850 0.8401 0.0004 19 1 0.3556 -2.3880 0.0002 20 1 2.6848 -3.7145 0.8893 21 1 2.6848 -3.7145 -0.8906 22 1 0.3800 -4.7126 -0.8431 23 1 2.5086 -6.2481 0.7150 24 1 2.3913 -6.1469 -1.0582 25 1 1.3726 -8.2454 -0.2169 26 1 0.1464 -7.1972 -0.9686 27 1 0.7201 -7.4025 2.0223 28 1 -1.4318 -8.4383 1.9813 29 1 -1.4092 -5.8673 0.4646 30 1 -1.2908 -5.9679 2.2379 31 1 0.9534 -4.9181 2.1480 32 1 -0.2729 -3.8698 1.3955 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227764218.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:58 Heat of formation + Delta-G solvation = -68.268634 kcal Electronic energy + Delta-G solvation = -12957.041263 eV Core-core repulsion = 10723.586944 eV Total energy + Delta-G solvation = -2233.454319 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.97495 -36.15251 -33.99737 -31.37995 -30.60225 -28.94774 -24.90921 -22.83585 -22.31801 -20.56376 -19.55865 -17.18523 -17.07714 -15.30330 -14.70903 -14.40260 -14.05875 -13.63179 -13.24762 -13.01362 -12.48864 -12.04661 -11.97012 -11.86193 -11.17837 -10.96860 -10.83994 -10.75404 -10.30462 -10.20157 -10.00100 -9.82306 -9.74584 -9.46610 -8.83430 -6.87392 -5.73564 -3.01498 3.45410 3.50303 3.52104 4.21186 4.61749 4.86043 4.89276 5.19042 5.34949 5.38489 5.57559 5.61140 5.63870 5.71549 5.76779 6.06164 6.15367 6.20206 6.26735 6.32307 6.36253 6.43097 6.58001 6.75126 6.89702 7.00305 7.63539 7.72918 8.45944 9.56793 10.16288 10.50998 11.49571 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.077932 B = 0.006905 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.200036 B = 4054.006619 C = 4286.855251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.157 3.843 11 C -0.096 4.096 12 C -0.109 4.109 13 C -0.109 4.109 14 C 0.104 3.896 15 O -0.574 6.574 16 C -0.150 4.150 17 C -0.108 4.108 18 H 0.254 0.746 19 H 0.384 0.616 20 H 0.018 0.982 21 H 0.018 0.982 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.374 0.626 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.189 -13.736 2.721 14.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.029 3.971 11 C -0.115 4.115 12 C -0.147 4.147 13 C -0.147 4.147 14 C 0.045 3.955 15 O -0.379 6.379 16 C -0.188 4.188 17 C -0.145 4.145 18 H 0.064 0.936 19 H 0.218 0.782 20 H 0.036 0.964 21 H 0.036 0.964 22 H 0.089 0.911 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.221 0.779 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.603 -13.713 2.138 13.892 hybrid contribution -0.122 1.140 0.573 1.282 sum 0.480 -12.573 2.711 12.871 Atomic orbital electron populations 1.69664 1.05105 1.25570 1.58066 1.24737 0.95527 0.97666 1.03225 0.86185 0.78621 0.83866 0.77496 1.21762 1.21808 1.20807 1.19257 0.91047 0.84288 1.42298 0.91246 1.42398 1.05870 1.00015 1.89398 1.20686 0.93243 0.85497 0.97639 1.21362 0.97756 0.94357 0.98025 1.21496 0.97376 0.93611 1.02177 1.21463 0.97857 0.98709 0.96651 1.21889 0.90006 0.85383 0.98174 1.86489 1.54866 1.51305 1.45258 1.22278 0.99034 0.95434 1.02037 1.21484 0.97506 0.98016 0.97532 0.93570 0.78248 0.96443 0.96449 0.91122 0.91923 0.91376 0.91803 0.91371 0.93000 0.77919 0.91283 0.92228 0.92287 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.67 13.06 55.49 0.72 -27.95 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.94 5.33 -59.91 -0.32 -19.26 16 10 C 0.16 3.24 5.65 -4.04 -0.02 3.21 16 11 C -0.10 -1.60 2.23 -90.62 -0.20 -1.80 16 12 C -0.11 -1.47 5.20 -26.73 -0.14 -1.61 16 13 C -0.11 -1.39 5.57 -26.73 -0.15 -1.54 16 14 C 0.10 1.29 3.47 -26.73 -0.09 1.20 16 15 O -0.57 -6.93 13.32 -35.23 -0.47 -7.40 16 16 C -0.15 -1.99 5.55 -26.73 -0.15 -2.14 16 17 C -0.11 -1.71 5.08 -26.73 -0.14 -1.85 16 18 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 19 H 0.38 10.35 6.85 -40.82 -0.28 10.07 16 20 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 21 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 22 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.37 2.94 9.08 45.56 0.41 3.36 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.44 7.18 -51.93 -0.37 1.06 16 LS Contribution 259.62 15.07 3.91 3.91 Total: -1.00 -31.44 259.62 -6.75 -38.18 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -4.43 Total: 6.86 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -1.14 Total: -12.03 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.41 Total: -47.21 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.47 Total: -7.40 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.44 -6.75 -38.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227764218.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.084 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds