Wall clock time and date at job start Mon Mar 30 2020 01:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99937 * 2 1 4 4 H 1.48498 * 109.47538 * 270.00070 * 3 2 1 5 5 H 1.48499 * 109.46888 * 30.00431 * 3 2 1 6 6 H 1.48500 * 109.47006 * 150.00059 * 3 2 1 7 7 C 1.38817 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99976 * 159.23208 * 7 2 1 9 9 N 1.36938 * 120.00354 * 339.22462 * 7 2 1 10 10 C 1.46499 * 119.99888 * 320.89299 * 9 7 2 11 11 C 1.53002 * 109.47153 * 269.99664 * 10 9 7 12 12 C 1.52995 * 109.47177 * 180.02562 * 11 10 9 13 13 O 1.42909 * 109.47081 * 179.97438 * 12 11 10 14 14 C 1.46495 * 120.00154 * 140.88323 * 9 7 2 15 15 C 1.53782 * 113.60945 * 43.11794 * 14 9 7 16 16 C 1.53960 * 87.01741 * 220.04588 * 15 14 9 17 17 C 1.53775 * 87.11035 * 25.36289 * 16 15 14 18 18 H 0.96999 * 120.00301 * 359.97438 * 1 2 3 19 19 H 1.08994 * 109.47328 * 149.99485 * 10 9 7 20 20 H 1.09004 * 109.47273 * 29.99168 * 10 9 7 21 21 H 1.09004 * 109.46626 * 299.99900 * 11 10 9 22 22 H 1.08994 * 109.47149 * 59.99712 * 11 10 9 23 23 H 1.09004 * 109.47124 * 299.99427 * 12 11 10 24 24 H 1.08995 * 109.47698 * 60.00218 * 12 11 10 25 25 H 0.96692 * 114.00032 * 179.97438 * 13 12 11 26 26 H 1.08993 * 112.84997 * 174.30944 * 14 9 7 27 27 H 1.08998 * 113.61690 * 334.56280 * 15 14 9 28 28 H 1.09000 * 113.61874 * 105.47130 * 15 14 9 29 29 H 1.09002 * 113.53850 * 270.81225 * 16 15 14 30 30 H 1.09003 * 113.66450 * 139.93452 * 16 15 14 31 31 H 1.09003 * 113.61377 * 220.08859 * 17 16 15 32 32 H 1.09004 * 113.69022 * 89.19765 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0376 -1.2324 -0.3322 9 7 1.3924 -2.3498 0.4196 10 6 0.4828 -2.3139 1.5675 11 6 1.2724 -2.5731 2.8521 12 6 0.3224 -2.5362 4.0508 13 8 1.0598 -2.7789 5.2507 14 6 1.6407 -3.6133 -0.2789 15 6 3.1204 -3.8428 -0.6293 16 6 2.6308 -4.4084 -1.9750 17 6 1.3721 -3.5442 -1.7915 18 1 -0.4850 0.8400 0.0004 19 1 -0.2815 -3.0819 1.4496 20 1 0.0079 -1.3344 1.6243 21 1 1.7473 -3.5526 2.7953 22 1 2.0367 -1.8050 2.9700 23 1 -0.1528 -1.5569 4.1079 24 1 -0.4416 -3.3045 3.9328 25 1 0.5200 -2.7697 6.0528 26 1 1.1703 -4.4665 0.2096 27 1 3.6943 -2.9212 -0.7260 28 1 3.6096 -4.5827 0.0042 29 1 2.4321 -5.4799 -1.9504 30 1 3.2452 -4.1101 -2.8245 31 1 0.4517 -4.0434 -2.0947 32 1 1.4657 -2.5405 -2.2062 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228063119.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:18 Heat of formation + Delta-G solvation = -20.928648 kcal Electronic energy + Delta-G solvation = -13267.276405 eV Core-core repulsion = 11035.874902 eV Total energy + Delta-G solvation = -2231.401503 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.04993 -36.61543 -34.39021 -31.64674 -29.72927 -25.18667 -24.57467 -24.48518 -21.71984 -20.15945 -18.73043 -16.98847 -15.97254 -15.43431 -14.81524 -14.53887 -14.04172 -13.62097 -12.56094 -12.33252 -12.27106 -11.81320 -11.46924 -11.05174 -10.96689 -10.78021 -10.45724 -10.33657 -10.10231 -9.96194 -9.61141 -9.50741 -9.34374 -9.20153 -8.43281 -6.47806 -5.76368 -3.35475 3.36219 3.44053 3.48344 4.47248 4.71115 5.33909 5.46470 5.60007 5.66554 5.69822 5.78287 5.91433 6.11965 6.20371 6.35398 6.43098 6.46581 6.64881 6.72238 6.81289 6.83149 6.98138 7.20292 7.25658 7.45242 7.68774 7.86972 7.98384 8.57205 9.23785 9.85749 10.45362 11.23086 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.019175 B = 0.016247 C = 0.010070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.877896 B = 1723.029014 C = 2779.934276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.014 3.986 3 Si 0.893 3.107 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.254 4.254 8 H 0.061 0.939 9 N -0.569 5.569 10 C 0.150 3.850 11 C -0.134 4.134 12 C 0.077 3.923 13 O -0.580 6.580 14 C 0.155 3.845 15 C -0.154 4.154 16 C -0.146 4.146 17 C -0.149 4.149 18 H 0.254 0.746 19 H 0.023 0.977 20 H 0.092 0.908 21 H 0.048 0.952 22 H 0.064 0.936 23 H 0.043 0.957 24 H 0.037 0.963 25 H 0.368 0.632 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.409 -5.454 3.180 6.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.186 4.186 3 Si 0.722 3.278 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.384 4.384 8 H 0.079 0.921 9 N -0.286 5.286 10 C 0.023 3.977 11 C -0.174 4.174 12 C -0.001 4.001 13 O -0.384 6.384 14 C 0.046 3.954 15 C -0.193 4.193 16 C -0.184 4.184 17 C -0.189 4.189 18 H 0.064 0.936 19 H 0.042 0.958 20 H 0.110 0.890 21 H 0.067 0.933 22 H 0.083 0.917 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.213 0.787 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.760 -5.332 2.748 6.047 hybrid contribution -0.091 0.925 0.360 0.997 sum 0.670 -4.407 3.108 5.434 Atomic orbital electron populations 1.70011 1.05560 1.25634 1.51707 1.25211 0.94980 0.98680 0.99771 0.86459 0.79669 0.83836 0.77802 1.21265 1.21528 1.20263 1.18899 0.93855 0.85166 1.40475 0.92127 1.43741 1.52238 1.03574 1.29076 1.20791 0.90831 1.02162 0.83891 1.22241 0.99440 1.01540 0.94197 1.22297 0.94468 0.98482 0.84847 1.86531 1.39724 1.95341 1.16804 1.21822 0.93359 0.89273 0.90914 1.23451 0.99899 1.00210 0.95756 1.22721 0.99389 0.98380 0.97940 1.23437 0.95164 0.99948 1.00308 0.93638 0.95850 0.89047 0.93309 0.91705 0.93915 0.94499 0.78708 0.91436 0.89673 0.93573 0.91776 0.92712 0.93795 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.18 11.54 55.49 0.64 -24.54 16 2 C 0.01 0.38 4.95 -17.43 -0.09 0.29 16 3 Si 0.89 21.51 29.60 -169.99 -5.03 16.48 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.82 8.09 -15.06 -0.12 -6.94 16 8 H 0.06 1.64 6.31 -52.49 -0.33 1.31 16 9 N -0.57 -14.07 2.66 -164.75 -0.44 -14.51 16 10 C 0.15 3.50 5.29 -4.04 -0.02 3.47 16 11 C -0.13 -2.80 5.91 -26.73 -0.16 -2.96 16 12 C 0.08 1.34 7.05 37.15 0.26 1.60 16 13 O -0.58 -9.58 13.66 -35.23 -0.48 -10.06 16 14 C 0.15 3.33 4.39 -67.12 -0.29 3.03 16 15 C -0.15 -2.99 7.59 -25.82 -0.20 -3.19 16 16 C -0.15 -2.55 8.09 -25.83 -0.21 -2.76 16 17 C -0.15 -3.06 7.65 -25.92 -0.20 -3.26 16 18 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 19 H 0.02 0.51 8.04 -51.93 -0.42 0.10 16 20 H 0.09 2.39 5.61 -51.93 -0.29 2.10 16 21 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.37 4.00 9.12 45.56 0.42 4.42 16 26 H 0.07 1.36 8.04 -51.93 -0.42 0.94 16 27 H 0.08 1.81 6.25 -51.93 -0.32 1.48 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 2.09 7.46 -51.93 -0.39 1.70 16 LS Contribution 262.08 15.07 3.95 3.95 Total: -1.00 -29.36 262.08 -6.66 -36.02 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.27 Total: 3.37 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -1.02 Total: -10.71 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.20 Total: -39.05 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.48 Total: -10.06 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.36 -6.66 -36.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228063119.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.089 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds