Wall clock time and date at job start Mon Mar 30 2020 01:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99937 * 2 1 4 4 H 1.48498 * 109.47538 * 270.00070 * 3 2 1 5 5 H 1.48499 * 109.46888 * 30.00431 * 3 2 1 6 6 H 1.48500 * 109.47006 * 150.00059 * 3 2 1 7 7 C 1.38817 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99976 * 159.23208 * 7 2 1 9 9 N 1.36938 * 120.00354 * 339.22462 * 7 2 1 10 10 C 1.46499 * 119.99888 * 320.89299 * 9 7 2 11 11 C 1.53002 * 109.47153 * 269.99664 * 10 9 7 12 12 C 1.52995 * 109.47177 * 180.02562 * 11 10 9 13 13 O 1.42909 * 109.47081 * 179.97438 * 12 11 10 14 14 C 1.46495 * 120.00154 * 140.88323 * 9 7 2 15 15 C 1.53782 * 113.60945 * 43.11794 * 14 9 7 16 16 C 1.53960 * 87.01741 * 220.04588 * 15 14 9 17 17 C 1.53775 * 87.11035 * 25.36289 * 16 15 14 18 18 H 0.96999 * 120.00301 * 359.97438 * 1 2 3 19 19 H 1.08994 * 109.47328 * 149.99485 * 10 9 7 20 20 H 1.09004 * 109.47273 * 29.99168 * 10 9 7 21 21 H 1.09004 * 109.46626 * 299.99900 * 11 10 9 22 22 H 1.08994 * 109.47149 * 59.99712 * 11 10 9 23 23 H 1.09004 * 109.47124 * 299.99427 * 12 11 10 24 24 H 1.08995 * 109.47698 * 60.00218 * 12 11 10 25 25 H 0.96692 * 114.00032 * 179.97438 * 13 12 11 26 26 H 1.08993 * 112.84997 * 174.30944 * 14 9 7 27 27 H 1.08998 * 113.61690 * 334.56280 * 15 14 9 28 28 H 1.09000 * 113.61874 * 105.47130 * 15 14 9 29 29 H 1.09002 * 113.53850 * 270.81225 * 16 15 14 30 30 H 1.09003 * 113.66450 * 139.93452 * 16 15 14 31 31 H 1.09003 * 113.61377 * 220.08859 * 17 16 15 32 32 H 1.09004 * 113.69022 * 89.19765 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0376 -1.2324 -0.3322 9 7 1.3924 -2.3498 0.4196 10 6 0.4828 -2.3139 1.5675 11 6 1.2724 -2.5731 2.8521 12 6 0.3224 -2.5362 4.0508 13 8 1.0598 -2.7789 5.2507 14 6 1.6407 -3.6133 -0.2789 15 6 3.1204 -3.8428 -0.6293 16 6 2.6308 -4.4084 -1.9750 17 6 1.3721 -3.5442 -1.7915 18 1 -0.4850 0.8400 0.0004 19 1 -0.2815 -3.0819 1.4496 20 1 0.0079 -1.3344 1.6243 21 1 1.7473 -3.5526 2.7953 22 1 2.0367 -1.8050 2.9700 23 1 -0.1528 -1.5569 4.1079 24 1 -0.4416 -3.3045 3.9328 25 1 0.5200 -2.7697 6.0528 26 1 1.1703 -4.4665 0.2096 27 1 3.6943 -2.9212 -0.7260 28 1 3.6096 -4.5827 0.0042 29 1 2.4321 -5.4799 -1.9504 30 1 3.2452 -4.1101 -2.8245 31 1 0.4517 -4.0434 -2.0947 32 1 1.4657 -2.5405 -2.2062 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228063119.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:18 Heat of formation + Delta-G solvation = -40.608011 kcal Electronic energy + Delta-G solvation = -13268.129767 eV Core-core repulsion = 11035.874902 eV Total energy + Delta-G solvation = -2232.254864 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.72217 -37.99036 -36.16034 -33.54503 -31.50460 -27.10071 -26.20859 -26.07784 -23.38049 -21.91064 -20.42962 -18.42033 -17.78258 -17.24093 -16.38588 -16.30334 -15.74716 -15.24232 -14.22192 -14.06726 -13.90135 -13.52010 -13.17557 -12.92996 -12.71148 -12.52857 -12.26255 -12.02217 -11.90855 -11.68591 -11.28744 -11.09637 -10.83870 -10.82863 -10.46542 -8.46707 -7.79697 -5.42835 1.42969 1.46328 1.55228 2.50515 3.20673 3.40026 3.84669 4.06382 4.13119 4.17321 4.29327 4.40204 4.50545 4.64797 4.76008 4.86026 4.95058 5.06472 5.10626 5.17061 5.19431 5.31120 5.46885 5.60893 5.72372 5.81899 5.83666 6.52260 6.95192 7.22547 7.92112 8.44554 9.15603 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.019175 B = 0.016247 C = 0.010070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.877896 B = 1723.029014 C = 2779.934276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.033 4.033 3 Si 0.948 3.052 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.254 4.254 8 H 0.053 0.947 9 N -0.586 5.586 10 C 0.152 3.848 11 C -0.122 4.122 12 C 0.086 3.914 13 O -0.594 6.594 14 C 0.138 3.862 15 C -0.150 4.150 16 C -0.122 4.122 17 C -0.153 4.153 18 H 0.251 0.749 19 H 0.033 0.967 20 H 0.062 0.938 21 H 0.050 0.950 22 H 0.034 0.966 23 H 0.042 0.958 24 H 0.060 0.940 25 H 0.394 0.606 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.783 -6.778 3.566 7.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.230 4.230 3 Si 0.777 3.223 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.385 4.385 8 H 0.071 0.929 9 N -0.305 5.305 10 C 0.026 3.974 11 C -0.162 4.162 12 C 0.008 3.992 13 O -0.402 6.402 14 C 0.031 3.969 15 C -0.190 4.190 16 C -0.160 4.160 17 C -0.192 4.192 18 H 0.060 0.940 19 H 0.052 0.948 20 H 0.080 0.920 21 H 0.069 0.931 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.244 0.756 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.140 -6.675 3.150 7.469 hybrid contribution -0.210 1.263 0.270 1.309 sum 0.931 -5.412 3.419 6.469 Atomic orbital electron populations 1.70119 1.06604 1.25875 1.53343 1.25809 0.95654 1.01214 1.00371 0.85591 0.78501 0.80619 0.77638 1.21026 1.21617 1.20070 1.19028 0.93653 0.86321 1.39465 0.92902 1.43976 1.52286 1.04131 1.30073 1.20692 0.91113 1.00843 0.84787 1.21987 0.98991 1.00346 0.94881 1.22071 0.93668 0.99399 0.84096 1.86449 1.40809 1.95290 1.17670 1.22165 0.95069 0.88464 0.91202 1.23326 0.98262 0.99855 0.97508 1.22655 0.96881 0.99464 0.96993 1.23323 0.97453 0.98865 0.99605 0.94016 0.94825 0.91968 0.93149 0.94688 0.93958 0.92131 0.75622 0.89731 0.92092 0.91645 0.88598 0.91610 0.92889 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.08 11.54 21.65 0.25 -52.83 16 2 C -0.03 -1.84 4.95 84.86 0.42 -1.42 16 3 Si 0.95 44.96 29.60 68.60 2.03 46.99 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.25 -13.86 8.09 84.03 0.68 -13.18 16 8 H 0.05 2.92 6.31 -2.91 -0.02 2.90 16 9 N -0.59 -29.13 2.66 -675.13 -1.79 -30.93 16 10 C 0.15 7.10 5.29 86.38 0.46 7.56 16 11 C -0.12 -5.04 5.91 30.59 0.18 -4.85 16 12 C 0.09 2.84 7.05 71.98 0.51 3.34 16 13 O -0.59 -18.25 13.66 -148.98 -2.04 -20.28 16 14 C 0.14 5.79 4.39 45.52 0.20 5.99 16 15 C -0.15 -5.59 7.59 31.18 0.24 -5.36 16 16 C -0.12 -3.92 8.09 31.18 0.25 -3.66 16 17 C -0.15 -6.13 7.65 31.12 0.24 -5.89 16 18 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 19 H 0.03 1.46 8.04 -2.39 -0.02 1.44 16 20 H 0.06 3.31 5.61 -2.38 -0.01 3.30 16 21 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 22 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 24 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.39 7.44 9.12 -74.06 -0.68 6.76 16 26 H 0.08 3.22 8.04 -2.39 -0.02 3.21 16 27 H 0.06 2.57 6.25 -2.39 -0.01 2.55 16 28 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 32 H 0.05 2.46 7.46 -2.38 -0.02 2.44 16 Total: -1.00 -63.01 262.08 2.04 -60.97 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.42 Total: 13.55 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 3.17 Total: -17.47 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -1.54 Total: -83.76 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -2.04 Total: -20.28 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -63.01 2.04 -60.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228063119.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.359 kcal (2) G-P(sol) polarization free energy of solvation -63.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds