Wall clock time and date at job start Mon Mar 30 2020 02:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 110.56682 * 2 1 4 4 C 1.46896 * 111.00239 * 298.77719 * 3 2 1 5 5 C 1.53005 * 109.47027 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46749 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00120 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99765 * 180.02562 * 6 5 4 9 9 N 1.31510 * 119.99798 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99965 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47274 * 359.97438 * 10 8 6 12 12 H 1.48508 * 109.47199 * 119.99711 * 10 8 6 13 13 H 1.48501 * 109.47146 * 239.99427 * 10 8 6 14 14 C 1.54510 * 110.51001 * 122.68333 * 2 1 3 15 15 C 1.54486 * 104.06135 * 118.64374 * 14 2 1 16 16 O 1.44421 * 104.80269 * 336.02090 * 15 14 2 17 17 C 1.44419 * 105.27785 * 40.51394 * 16 15 14 18 18 H 1.08999 * 109.47343 * 181.22269 * 1 2 3 19 19 H 1.09004 * 109.46860 * 301.22206 * 1 2 3 20 20 H 1.08994 * 109.47089 * 61.22053 * 1 2 3 21 21 H 1.00900 * 110.99768 * 62.73475 * 3 2 1 22 22 H 1.08994 * 109.47273 * 299.99687 * 4 3 2 23 23 H 1.09002 * 109.46854 * 59.99824 * 4 3 2 24 24 H 1.08994 * 109.47045 * 300.00079 * 5 4 3 25 25 H 1.08994 * 109.46933 * 60.00296 * 5 4 3 26 26 H 0.97004 * 120.00015 * 180.02562 * 9 8 6 27 27 H 1.09004 * 110.51047 * 237.28592 * 14 2 1 28 28 H 1.08993 * 110.51320 * 0.02562 * 14 2 1 29 29 H 1.09003 * 110.36984 * 217.18794 * 15 14 2 30 30 H 1.09005 * 110.46644 * 94.90209 * 15 14 2 31 31 H 1.09006 * 110.37190 * 200.65887 * 17 16 15 32 32 H 1.09001 * 110.46980 * 78.36397 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0460 1.3753 0.0000 4 6 1.6129 2.1002 -1.2020 5 6 2.1681 3.5255 -1.1658 6 6 1.7232 4.2692 -2.3987 7 1 1.1065 3.7747 -3.1346 8 6 2.1043 5.5808 -2.5876 9 7 2.8556 6.1828 -1.6918 10 14 1.5534 6.5025 -4.1161 11 1 0.7227 5.6077 -4.9614 12 1 0.7549 7.6895 -3.7175 13 1 2.7451 6.9431 -4.8849 14 6 2.0713 -0.7815 1.2180 15 6 2.8757 -1.9423 0.5919 16 8 2.3069 -2.1177 -0.7240 17 6 2.0713 -0.7812 -1.2179 18 1 -0.3634 -1.0274 0.0219 19 1 -0.3633 0.5327 0.8789 20 1 -0.3633 0.4947 -0.9007 21 1 1.7690 1.8654 0.8373 22 1 1.9846 1.5875 -2.0891 23 1 0.5238 2.1355 -1.2323 24 1 1.7960 4.0379 -0.2787 25 1 3.2570 3.4905 -1.1354 26 1 3.1235 7.1056 -1.8245 27 1 2.7219 -0.1472 1.8202 28 1 1.2490 -1.1682 1.8199 29 1 2.7534 -2.8504 1.1823 30 1 3.9306 -1.6783 0.5172 31 1 1.3310 -0.7973 -2.0179 32 1 3.0013 -0.3360 -1.5714 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229450947.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:58 Heat of formation + Delta-G solvation = -58.428848 kcal Electronic energy + Delta-G solvation = -12985.505932 eV Core-core repulsion = 10752.478298 eV Total energy + Delta-G solvation = -2233.027634 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.66411 -35.92987 -33.24993 -31.37212 -29.54926 -28.00348 -26.25441 -24.22947 -22.57848 -20.41340 -19.38284 -16.54013 -15.99737 -15.82396 -15.03255 -14.67118 -14.34749 -13.84395 -13.31750 -13.28867 -12.35808 -12.31789 -12.01554 -11.44960 -11.27527 -11.14645 -10.97429 -10.87544 -10.53431 -10.49098 -10.03189 -9.57850 -9.39288 -9.13964 -8.37532 -7.87624 -6.01486 -4.04092 3.30256 3.37738 3.41688 4.07008 4.42950 4.63108 4.69600 4.94553 5.06672 5.32590 5.34758 5.39842 5.66493 5.75676 5.83788 5.94594 5.98221 5.98862 6.10473 6.16947 6.30903 6.48111 6.87123 6.95819 7.46277 7.69860 7.80066 7.91441 8.05523 8.41522 9.03410 9.59981 11.10004 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.066392 B = 0.006834 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.637384 B = 4096.475933 C = 4172.557138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.077 3.923 3 N -0.676 5.676 4 C 0.061 3.939 5 C 0.025 3.975 6 C -0.521 4.521 7 H 0.055 0.945 8 C 0.058 3.942 9 N -0.893 5.893 10 Si 0.892 3.108 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C -0.145 4.145 15 C 0.049 3.951 16 O -0.381 6.381 17 C 0.058 3.942 18 H 0.058 0.942 19 H 0.055 0.945 20 H 0.063 0.937 21 H 0.339 0.661 22 H 0.059 0.941 23 H 0.021 0.979 24 H 0.013 0.987 25 H 0.025 0.975 26 H 0.260 0.740 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.461 -12.610 4.798 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.015 4.015 3 N -0.307 5.307 4 C -0.067 4.067 5 C -0.012 4.012 6 C -0.560 4.560 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.720 3.280 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C -0.183 4.183 15 C -0.028 4.028 16 O -0.300 6.300 17 C -0.019 4.019 18 H 0.078 0.922 19 H 0.074 0.926 20 H 0.082 0.918 21 H 0.157 0.843 22 H 0.077 0.923 23 H 0.039 0.961 24 H 0.032 0.968 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.804 -12.826 4.448 13.695 hybrid contribution -1.197 1.062 -0.474 1.669 sum -3.001 -11.764 3.974 12.775 Atomic orbital electron populations 1.22467 0.96377 1.01959 1.02398 1.22268 0.92814 0.91353 0.95034 1.60874 1.62574 1.00820 1.06427 1.22236 0.96797 0.97098 0.90604 1.19070 0.97093 0.88210 0.96862 1.21210 1.31900 0.96900 1.05996 0.92707 1.25005 0.95128 0.97691 0.96550 1.69981 1.36322 1.12233 1.34725 0.86535 0.78466 0.79792 0.83196 1.19759 1.21020 1.20950 1.23014 1.00310 0.97265 0.97749 1.23330 0.97175 0.98189 0.84107 1.89069 1.83164 1.26490 1.31241 1.23501 1.00987 0.81722 0.95685 0.92247 0.92593 0.91815 0.84297 0.92269 0.96087 0.96827 0.95692 0.93029 0.89607 0.90996 0.89677 0.92142 0.89452 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 8.04 37.16 0.30 -2.06 16 2 C 0.08 1.14 0.94 -130.03 -0.12 1.01 16 3 N -0.68 -11.76 5.99 -98.38 -0.59 -12.35 16 4 C 0.06 1.25 5.02 -3.82 -0.02 1.23 16 5 C 0.03 0.65 5.23 -27.88 -0.15 0.50 16 6 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 7 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 10 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C -0.15 -1.79 6.51 -25.16 -0.16 -1.95 16 15 C 0.05 0.60 7.63 37.94 0.29 0.89 16 16 O -0.38 -5.72 11.65 -35.23 -0.41 -6.13 16 17 C 0.06 0.88 5.65 37.94 0.21 1.10 16 18 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 19 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 20 H 0.06 0.93 6.60 -51.93 -0.34 0.59 16 21 H 0.34 5.70 8.79 -39.29 -0.35 5.35 16 22 H 0.06 1.23 7.03 -51.93 -0.36 0.86 16 23 H 0.02 0.43 6.45 -51.93 -0.34 0.09 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.09 1.04 7.97 -51.93 -0.41 0.63 16 28 H 0.07 0.78 7.73 -51.93 -0.40 0.38 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.28 7.87 -51.93 -0.41 0.87 16 32 H 0.07 1.20 7.81 -51.93 -0.41 0.79 16 LS Contribution 260.53 15.07 3.93 3.93 Total: -1.00 -30.04 260.53 -6.51 -36.55 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.09 Total: 0.36 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -0.06 Total: -12.80 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.15 Total: -38.55 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.41 Total: -6.13 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.04 -6.51 -36.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229450947.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.880 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds