Wall clock time and date at job start Mon Mar 30 2020 02:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 110.56682 * 2 1 4 4 C 1.46896 * 111.00239 * 298.77719 * 3 2 1 5 5 C 1.53005 * 109.47027 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46749 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00120 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99765 * 180.02562 * 6 5 4 9 9 N 1.31510 * 119.99798 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99965 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47274 * 359.97438 * 10 8 6 12 12 H 1.48508 * 109.47199 * 119.99711 * 10 8 6 13 13 H 1.48501 * 109.47146 * 239.99427 * 10 8 6 14 14 C 1.54510 * 110.51001 * 122.68333 * 2 1 3 15 15 C 1.54486 * 104.06135 * 118.64374 * 14 2 1 16 16 O 1.44421 * 104.80269 * 336.02090 * 15 14 2 17 17 C 1.44419 * 105.27785 * 40.51394 * 16 15 14 18 18 H 1.08999 * 109.47343 * 181.22269 * 1 2 3 19 19 H 1.09004 * 109.46860 * 301.22206 * 1 2 3 20 20 H 1.08994 * 109.47089 * 61.22053 * 1 2 3 21 21 H 1.00900 * 110.99768 * 62.73475 * 3 2 1 22 22 H 1.08994 * 109.47273 * 299.99687 * 4 3 2 23 23 H 1.09002 * 109.46854 * 59.99824 * 4 3 2 24 24 H 1.08994 * 109.47045 * 300.00079 * 5 4 3 25 25 H 1.08994 * 109.46933 * 60.00296 * 5 4 3 26 26 H 0.97004 * 120.00015 * 180.02562 * 9 8 6 27 27 H 1.09004 * 110.51047 * 237.28592 * 14 2 1 28 28 H 1.08993 * 110.51320 * 0.02562 * 14 2 1 29 29 H 1.09003 * 110.36984 * 217.18794 * 15 14 2 30 30 H 1.09005 * 110.46644 * 94.90209 * 15 14 2 31 31 H 1.09006 * 110.37190 * 200.65887 * 17 16 15 32 32 H 1.09001 * 110.46980 * 78.36397 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0460 1.3753 0.0000 4 6 1.6129 2.1002 -1.2020 5 6 2.1681 3.5255 -1.1658 6 6 1.7232 4.2692 -2.3987 7 1 1.1065 3.7747 -3.1346 8 6 2.1043 5.5808 -2.5876 9 7 2.8556 6.1828 -1.6918 10 14 1.5534 6.5025 -4.1161 11 1 0.7227 5.6077 -4.9614 12 1 0.7549 7.6895 -3.7175 13 1 2.7451 6.9431 -4.8849 14 6 2.0713 -0.7815 1.2180 15 6 2.8757 -1.9423 0.5919 16 8 2.3069 -2.1177 -0.7240 17 6 2.0713 -0.7812 -1.2179 18 1 -0.3634 -1.0274 0.0219 19 1 -0.3633 0.5327 0.8789 20 1 -0.3633 0.4947 -0.9007 21 1 1.7690 1.8654 0.8373 22 1 1.9846 1.5875 -2.0891 23 1 0.5238 2.1355 -1.2323 24 1 1.7960 4.0379 -0.2787 25 1 3.2570 3.4905 -1.1354 26 1 3.1235 7.1056 -1.8245 27 1 2.7219 -0.1472 1.8202 28 1 1.2490 -1.1682 1.8199 29 1 2.7534 -2.8504 1.1823 30 1 3.9306 -1.6783 0.5172 31 1 1.3310 -0.7973 -2.0179 32 1 3.0013 -0.3360 -1.5714 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229450947.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:58 Heat of formation + Delta-G solvation = -79.718786 kcal Electronic energy + Delta-G solvation = -12986.429133 eV Core-core repulsion = 10752.478298 eV Total energy + Delta-G solvation = -2233.950835 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.82003 -37.35288 -35.22419 -32.98595 -30.75921 -29.63914 -27.41964 -26.12140 -23.83906 -22.12386 -20.62037 -18.54095 -17.24561 -17.09555 -16.49815 -16.31878 -15.82345 -15.17959 -14.86483 -14.44945 -14.14794 -13.76519 -13.29093 -13.07982 -12.88243 -12.72673 -12.40261 -12.23879 -12.00984 -11.89814 -11.65580 -11.39271 -11.17600 -10.69330 -10.57737 -9.31313 -8.21290 -6.32517 1.39979 1.40564 1.53689 2.39817 2.94669 3.12507 3.39553 3.54357 3.86848 3.97452 4.30353 4.34919 4.47473 4.55939 4.65050 4.69661 4.78413 4.83227 4.89176 5.02840 5.07682 5.10479 5.22028 5.44862 5.67174 5.72533 5.82778 6.13884 6.28176 6.52695 6.85181 7.36994 8.91092 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.066392 B = 0.006834 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.637384 B = 4096.475933 C = 4172.557138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.073 3.927 3 N -0.680 5.680 4 C 0.081 3.919 5 C 0.032 3.968 6 C -0.543 4.543 7 H 0.060 0.940 8 C 0.001 3.999 9 N -0.932 5.932 10 Si 0.966 3.034 11 H -0.262 1.262 12 H -0.277 1.277 13 H -0.278 1.278 14 C -0.139 4.139 15 C 0.044 3.956 16 O -0.393 6.393 17 C 0.058 3.942 18 H 0.074 0.926 19 H 0.063 0.937 20 H 0.050 0.950 21 H 0.343 0.657 22 H 0.056 0.944 23 H 0.026 0.974 24 H -0.008 1.008 25 H -0.007 1.007 26 H 0.264 0.736 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.386 -13.494 4.683 14.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.312 5.312 4 C -0.047 4.047 5 C -0.006 4.006 6 C -0.582 4.582 7 H 0.078 0.922 8 C -0.197 4.197 9 N -0.572 5.572 10 Si 0.790 3.210 11 H -0.186 1.186 12 H -0.203 1.203 13 H -0.204 1.204 14 C -0.177 4.177 15 C -0.032 4.032 16 O -0.311 6.311 17 C -0.019 4.019 18 H 0.093 0.907 19 H 0.082 0.918 20 H 0.069 0.931 21 H 0.161 0.839 22 H 0.075 0.925 23 H 0.044 0.956 24 H 0.011 0.989 25 H 0.012 0.988 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.111 0.889 29 H 0.132 0.868 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.732 -13.734 4.343 14.661 hybrid contribution -0.867 1.292 -0.381 1.602 sum -3.600 -12.441 3.962 13.544 Atomic orbital electron populations 1.22406 0.95212 1.02915 1.02125 1.22392 0.93728 0.89534 0.96180 1.60760 1.63105 1.02033 1.05274 1.21814 0.96561 0.94272 0.92090 1.18921 0.95066 0.91258 0.95338 1.21645 1.32047 0.97626 1.06876 0.92193 1.25965 0.95031 0.98762 0.99963 1.70110 1.37459 1.12769 1.36870 0.85388 0.78217 0.78379 0.78985 1.18589 1.20267 1.20389 1.23006 1.00990 0.96877 0.96807 1.23547 0.96976 0.99508 0.83201 1.89059 1.83402 1.26046 1.32633 1.23431 1.00213 0.82149 0.96147 0.90684 0.91805 0.93108 0.83866 0.92519 0.95626 0.98936 0.98841 0.92737 0.89475 0.88869 0.86846 0.92267 0.89201 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 8.04 71.98 0.58 -3.64 16 2 C 0.07 2.04 0.94 4.55 0.00 2.04 16 3 N -0.68 -23.40 5.99 -465.16 -2.79 -26.19 16 4 C 0.08 3.37 5.02 86.31 0.43 3.80 16 5 C 0.03 1.68 5.23 29.85 0.16 1.84 16 6 C -0.54 -31.07 9.11 25.60 0.23 -30.84 16 7 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 8 C 0.00 0.04 5.46 84.66 0.46 0.50 16 9 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 10 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 11 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 13 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 14 C -0.14 -3.08 6.51 31.61 0.21 -2.87 16 15 C 0.04 0.97 7.63 72.49 0.55 1.52 16 16 O -0.39 -11.09 11.65 -148.98 -1.74 -12.83 16 17 C 0.06 1.71 5.65 72.49 0.41 2.12 16 18 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 19 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 20 H 0.05 1.40 6.60 -2.39 -0.02 1.39 16 21 H 0.34 11.36 8.79 -89.69 -0.79 10.57 16 22 H 0.06 2.36 7.03 -2.39 -0.02 2.35 16 23 H 0.03 1.04 6.45 -2.39 -0.02 1.02 16 24 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 25 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 26 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 27 H 0.09 1.93 7.97 -2.39 -0.02 1.91 16 28 H 0.09 1.70 7.73 -2.39 -0.02 1.68 16 29 H 0.11 1.86 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.09 2.56 7.87 -2.38 -0.02 2.54 16 32 H 0.05 1.80 7.81 -2.39 -0.02 1.78 16 Total: -1.00 -63.98 260.53 1.12 -62.85 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.30 Total: 12.06 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 3.04 Total: -25.53 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -2.50 Total: -82.92 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -1.74 Total: -12.83 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -63.98 1.12 -62.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229450947.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.868 kcal (2) G-P(sol) polarization free energy of solvation -63.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds