Wall clock time and date at job start Mon Mar 30 2020 02:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.50693 * 55.00046 * 3 2 1 5 5 C 1.53042 * 109.50196 * 294.91954 * 3 2 1 6 6 N 1.46852 * 109.52030 * 180.92577 * 5 3 2 7 7 C 1.46846 * 111.23261 * 61.68029 * 6 5 3 8 8 C 1.53031 * 109.52616 * 298.27643 * 7 6 5 9 9 C 1.53120 * 109.28033 * 59.17896 * 8 7 6 10 10 O 1.42897 * 109.52852 * 182.44090 * 9 8 7 11 11 C 1.50701 * 109.57300 * 62.28260 * 9 8 7 12 12 H 1.08007 * 120.00348 * 240.28658 * 11 9 8 13 13 C 1.37880 * 120.00101 * 60.28225 * 11 9 8 14 14 N 1.31517 * 119.99539 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00081 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47233 * 90.00643 * 15 13 11 17 17 H 1.48502 * 109.47366 * 210.00333 * 15 13 11 18 18 H 1.48498 * 109.47317 * 330.00647 * 15 13 11 19 19 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 21 21 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 22 22 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 23 23 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 24 24 H 1.09007 * 109.46155 * 300.89691 * 5 3 2 25 25 H 1.08994 * 109.46128 * 60.86718 * 5 3 2 26 26 H 1.00895 * 110.99265 * 185.80156 * 6 5 3 27 27 H 1.09004 * 109.46069 * 178.26075 * 7 6 5 28 28 H 1.09001 * 109.45377 * 58.29240 * 7 6 5 29 29 H 1.09005 * 109.50488 * 299.23978 * 8 7 6 30 30 H 1.08995 * 109.50760 * 179.12064 * 8 7 6 31 31 H 0.96702 * 113.99835 * 299.68828 * 10 9 8 32 32 H 0.96999 * 119.99382 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9820 0.8416 5 6 1.6372 2.1268 -1.3083 6 7 2.1455 3.5045 -1.3182 7 6 3.6121 3.5307 -1.2479 8 6 4.0729 2.8887 0.0625 9 6 3.5662 1.4451 0.1238 10 8 3.9451 0.8584 1.3705 11 6 4.1647 0.6514 -1.0088 12 1 3.5217 0.1906 -1.7442 13 6 5.5331 0.5135 -1.1064 14 7 6.3159 1.0742 -0.2106 15 14 6.2749 -0.4709 -2.5099 16 1 6.5328 0.4284 -3.6632 17 1 7.5524 -1.0830 -2.0642 18 1 5.3293 -1.5407 -2.9182 19 1 -0.3635 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.0599 1.5783 -2.1502 25 1 0.5505 2.1394 -1.3920 26 1 1.8132 4.0066 -2.1278 27 1 3.9592 4.5633 -1.2882 28 1 4.0258 2.9754 -2.0897 29 1 3.6706 3.4517 0.9048 30 1 5.1619 2.8943 0.1073 31 1 4.9006 0.8272 1.5162 32 1 7.2786 0.9769 -0.2791 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229827471.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:35 Heat of formation + Delta-G solvation = -65.686900 kcal Electronic energy + Delta-G solvation = -14023.338867 eV Core-core repulsion = 11789.996500 eV Total energy + Delta-G solvation = -2233.342366 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.45494 -34.53152 -33.40074 -32.00430 -29.26965 -28.17910 -25.21006 -23.26942 -21.73874 -19.98795 -18.67391 -16.33074 -15.71193 -15.06186 -14.32606 -14.05166 -13.42068 -13.05189 -12.89186 -12.68961 -11.99542 -11.56706 -11.41340 -11.06932 -11.02502 -10.86159 -10.60897 -10.29855 -10.04728 -9.99922 -9.80921 -9.37730 -8.76533 -8.51735 -7.90218 -7.61578 -6.12049 -4.21011 3.21576 3.29928 3.33140 4.33115 5.04474 5.11822 5.71249 5.76488 5.83017 5.99651 6.17719 6.20347 6.32330 6.43676 6.52490 6.66330 6.71508 6.78154 6.84338 7.15706 7.20698 7.29243 7.30574 7.46447 7.60117 7.84711 8.10089 8.17729 8.30489 8.80172 9.45905 9.63669 10.90714 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.031570 B = 0.015639 C = 0.014030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.711342 B = 1789.912395 C = 1995.210983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.060 4.060 4 H 0.054 0.946 5 C 0.073 3.927 6 N -0.695 5.695 7 C 0.073 3.927 8 C -0.134 4.134 9 C 0.254 3.746 10 O -0.593 6.593 11 C -0.522 4.522 12 H 0.059 0.941 13 C 0.067 3.933 14 N -0.899 5.899 15 Si 0.892 3.108 16 H -0.282 1.282 17 H -0.285 1.285 18 H -0.274 1.274 19 H 0.042 0.958 20 H 0.046 0.954 21 H 0.047 0.953 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.036 0.964 25 H 0.056 0.944 26 H 0.324 0.676 27 H 0.047 0.953 28 H 0.039 0.961 29 H 0.030 0.970 30 H 0.094 0.906 31 H 0.379 0.621 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.484 1.369 -2.131 6.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C -0.079 4.079 4 H 0.072 0.928 5 C -0.056 4.056 6 N -0.325 5.325 7 C -0.056 4.056 8 C -0.172 4.172 9 C 0.214 3.786 10 O -0.402 6.402 11 C -0.560 4.560 12 H 0.077 0.923 13 C -0.133 4.133 14 N -0.540 5.540 15 Si 0.720 3.280 16 H -0.208 1.208 17 H -0.211 1.211 18 H -0.199 1.199 19 H 0.061 0.939 20 H 0.065 0.935 21 H 0.066 0.934 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.140 0.860 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.112 0.888 31 H 0.229 0.771 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.014 1.405 -1.343 6.321 hybrid contribution 1.400 -0.684 -1.828 2.402 sum -4.615 0.720 -3.171 5.645 Atomic orbital electron populations 1.21889 0.97970 1.00199 1.00869 1.21389 0.92852 0.97427 1.02738 1.20967 0.96864 0.94335 0.95781 0.92802 1.21887 0.97387 0.88373 0.97966 1.60409 1.11100 1.15428 1.45549 1.21780 0.86120 0.98120 0.99554 1.22177 1.03351 0.97677 0.94041 1.18627 0.88655 0.88658 0.82652 1.86092 1.29386 1.84465 1.40234 1.21765 0.91572 1.32012 1.10689 0.92296 1.24983 0.97183 0.95088 0.96077 1.69588 1.04469 1.44605 1.35375 0.86597 0.78707 0.80387 0.82320 1.20794 1.21117 1.19919 0.93859 0.93493 0.93390 0.91862 0.91609 0.94609 0.92561 0.86016 0.93458 0.94296 0.95142 0.88771 0.77148 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.67 37.16 0.36 -2.11 16 2 C -0.11 -2.15 4.95 -26.73 -0.13 -2.28 16 3 C -0.06 -1.33 1.84 -90.53 -0.17 -1.49 16 4 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 5 C 0.07 1.44 5.36 -3.83 -0.02 1.41 16 6 N -0.70 -13.37 6.84 -113.81 -0.78 -14.15 16 7 C 0.07 1.56 6.34 -3.84 -0.02 1.53 16 8 C -0.13 -3.23 5.04 -26.65 -0.13 -3.36 16 9 C 0.25 6.29 0.53 -91.65 -0.05 6.24 16 10 O -0.59 -15.68 12.32 -35.23 -0.43 -16.12 16 11 C -0.52 -13.61 5.75 -34.44 -0.20 -13.81 16 12 H 0.06 1.55 5.69 -52.48 -0.30 1.25 16 13 C 0.07 1.76 5.22 -17.82 -0.09 1.67 16 14 N -0.90 -23.86 9.69 55.43 0.54 -23.32 16 15 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.05 0.72 6.59 -51.93 -0.34 0.38 16 22 H 0.06 1.34 6.66 -51.93 -0.35 0.99 16 23 H 0.07 1.43 7.62 -51.93 -0.40 1.04 16 24 H 0.04 0.75 6.79 -51.92 -0.35 0.40 16 25 H 0.06 0.97 6.61 -51.93 -0.34 0.63 16 26 H 0.32 5.27 8.90 -39.29 -0.35 4.92 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.04 0.89 7.31 -51.93 -0.38 0.51 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 2.45 6.05 -51.93 -0.31 2.13 16 31 H 0.38 10.17 7.14 45.56 0.33 10.50 16 32 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 242.81 15.07 3.66 3.66 Total: -1.00 -26.91 242.81 -6.54 -33.45 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -4.05 Total: 13.02 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -0.46 Total: -12.19 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.24 Total: -37.47 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.43 Total: -16.12 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -26.91 -6.54 -33.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229827471.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.232 kcal (2) G-P(sol) polarization free energy of solvation -26.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds