Wall clock time and date at job start Mon Mar 30 2020 02:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46689 * 2 1 4 4 H 1.09000 * 109.53309 * 55.07669 * 3 2 1 5 5 C 1.53201 * 109.49906 * 294.99500 * 3 2 1 6 6 N 1.46916 * 108.77783 * 185.41544 * 5 3 2 7 7 C 1.36937 * 120.63127 * 233.58664 * 6 5 3 8 8 H 1.07997 * 120.00025 * 27.68790 * 7 6 5 9 9 C 1.38811 * 120.00180 * 207.67921 * 7 6 5 10 10 N 1.31622 * 119.99871 * 17.38431 * 9 7 6 11 11 Si 1.86794 * 120.00350 * 197.37827 * 9 7 6 12 12 H 1.48500 * 109.46972 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47404 * 120.00184 * 11 9 7 14 14 H 1.48503 * 109.47509 * 240.00243 * 11 9 7 15 15 C 1.46926 * 118.74139 * 53.60927 * 6 5 3 16 16 C 1.53194 * 108.77714 * 306.39483 * 15 6 5 17 17 C 1.53037 * 109.49803 * 175.16225 * 3 2 1 18 18 H 1.09006 * 109.46019 * 301.33176 * 17 3 2 19 19 O 1.42904 * 109.46409 * 61.29135 * 17 3 2 20 20 H 1.09005 * 109.46806 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47340 * 300.00008 * 1 2 3 22 22 H 1.08998 * 109.46935 * 60.00926 * 1 2 3 23 23 H 1.09001 * 109.47340 * 239.99992 * 2 1 3 24 24 H 1.08998 * 109.46935 * 119.99074 * 2 1 3 25 25 H 1.09002 * 109.58482 * 305.20995 * 5 3 2 26 26 H 1.09003 * 109.58168 * 65.62912 * 5 3 2 27 27 H 0.97003 * 120.00166 * 179.97438 * 10 9 7 28 28 H 1.09008 * 109.58464 * 66.17606 * 15 6 5 29 29 H 1.08997 * 109.59168 * 186.60310 * 15 6 5 30 30 H 1.08995 * 109.50125 * 174.58426 * 16 15 6 31 31 H 1.09002 * 109.49364 * 294.65041 * 16 15 6 32 32 H 0.96701 * 114.00163 * 180.02562 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6069 1.9821 0.8423 5 6 1.6350 2.1280 -1.3089 6 7 2.2414 3.4656 -1.3495 7 6 1.4693 4.5753 -1.5674 8 1 0.4292 4.5751 -1.2766 9 6 2.0234 5.7006 -2.1619 10 7 3.1594 5.6054 -2.8199 11 14 1.1570 7.3501 -2.0284 12 1 -0.0927 7.1905 -1.2422 13 1 2.0483 8.3238 -1.3481 14 1 0.8269 7.8474 -3.3882 15 6 3.6920 3.5900 -1.1523 16 6 4.0740 2.8881 0.1547 17 6 3.5655 1.4451 0.1217 18 1 3.8574 0.9361 1.0404 19 8 4.1337 0.7657 -0.9998 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5137 0.8901 25 1 1.9907 1.5396 -2.1547 26 1 0.5496 2.2173 -1.3539 27 1 3.5465 6.3916 -3.2357 28 1 4.2156 3.1208 -1.9854 29 1 3.9639 4.6439 -1.0941 30 1 5.1584 2.8894 0.2650 31 1 3.6222 3.4143 0.9957 32 1 5.0999 0.7283 -0.9888 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229831907.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:38 Heat of formation + Delta-G solvation = -45.279150 kcal Electronic energy + Delta-G solvation = -13654.621859 eV Core-core repulsion = 11422.164439 eV Total energy + Delta-G solvation = -2232.457420 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.54835 -34.95351 -34.00127 -31.53816 -29.86913 -28.16537 -25.10542 -23.35197 -21.82327 -20.36134 -18.99012 -16.74053 -16.10607 -14.88513 -14.40806 -14.22552 -14.03555 -13.05609 -12.97051 -12.81245 -12.42032 -12.03787 -11.43645 -11.16203 -11.02157 -10.83733 -10.57553 -10.40873 -10.29055 -10.15489 -9.89616 -9.69089 -9.28565 -9.04660 -8.39444 -6.56578 -5.71995 -3.13114 3.39945 3.47647 3.50199 4.54281 4.86502 5.20790 5.40816 5.46943 5.50814 5.60386 5.75253 5.87626 5.99808 6.08946 6.19751 6.41217 6.43055 6.47390 6.55242 6.66531 6.74642 6.84457 6.97896 7.21450 7.46839 7.75925 7.85379 8.20202 8.52295 9.29080 9.93671 10.51712 11.36386 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042671 B = 0.011606 C = 0.009873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.023666 B = 2411.934777 C = 2835.207640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.097 4.097 4 H 0.073 0.927 5 C 0.158 3.842 6 N -0.593 5.593 7 C -0.249 4.249 8 H 0.065 0.935 9 C -0.001 4.001 10 N -0.903 5.903 11 Si 0.900 3.100 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.291 1.291 15 C 0.177 3.823 16 C -0.177 4.177 17 C 0.118 3.882 18 H 0.032 0.968 19 O -0.559 6.559 20 H 0.045 0.955 21 H 0.049 0.951 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.049 0.951 25 H 0.025 0.975 26 H 0.050 0.950 27 H 0.252 0.748 28 H 0.023 0.977 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.310 -8.138 6.263 10.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.118 4.118 4 H 0.091 0.909 5 C 0.032 3.968 6 N -0.315 5.315 7 C -0.379 4.379 8 H 0.083 0.917 9 C -0.199 4.199 10 N -0.548 5.548 11 Si 0.730 3.270 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.218 1.218 15 C 0.051 3.949 16 C -0.217 4.217 17 C 0.059 3.941 18 H 0.050 0.950 19 O -0.363 6.363 20 H 0.064 0.936 21 H 0.068 0.932 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.041 0.959 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -0.267 -8.054 6.003 10.048 hybrid contribution 0.299 1.019 0.279 1.098 sum 0.033 -7.035 6.282 9.432 Atomic orbital electron populations 1.21812 0.96415 1.00628 1.02049 1.21444 0.95213 0.96848 1.01420 1.21706 0.92906 0.95537 1.01616 0.90862 1.20863 0.96105 0.86867 0.92999 1.44059 1.03632 1.00945 1.82903 1.19250 0.94595 0.91279 1.32751 0.91723 1.25030 0.98026 0.99314 0.97517 1.70062 1.20664 1.28243 1.35806 0.86252 0.78979 0.84426 0.77320 1.20289 1.21659 1.21774 1.20650 0.84005 0.99818 0.90377 1.22894 0.98876 0.96902 1.02989 1.21689 0.94057 0.91465 0.86845 0.94980 1.86542 1.23952 1.78743 1.47074 0.93559 0.93161 0.92211 0.91579 0.93257 0.95659 0.93162 0.93816 0.95927 0.89842 0.93273 0.92043 0.78865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 37.16 0.36 -1.77 16 2 C -0.11 -1.73 5.21 -26.73 -0.14 -1.87 16 3 C -0.10 -1.81 2.17 -90.50 -0.20 -2.00 16 4 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 5 C 0.16 3.55 5.17 -3.71 -0.02 3.53 16 6 N -0.59 -15.55 2.99 -172.32 -0.52 -16.06 16 7 C -0.25 -7.06 9.59 -15.06 -0.14 -7.21 16 8 H 0.07 1.80 7.89 -52.49 -0.41 1.39 16 9 C 0.00 -0.02 4.91 -17.43 -0.09 -0.11 16 10 N -0.90 -26.92 11.19 55.49 0.62 -26.30 16 11 Si 0.90 22.12 29.59 -169.99 -5.03 17.09 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 C 0.18 4.40 5.07 -3.71 -0.02 4.38 16 16 C -0.18 -3.47 5.80 -26.61 -0.15 -3.62 16 17 C 0.12 2.10 3.19 -26.69 -0.09 2.01 16 18 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 19 O -0.56 -9.90 11.52 -35.23 -0.41 -10.30 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.06 0.89 6.70 -51.93 -0.35 0.54 16 23 H 0.07 1.09 7.86 -51.93 -0.41 0.68 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.03 0.61 7.81 -51.93 -0.41 0.20 16 26 H 0.05 1.11 6.65 -51.93 -0.35 0.76 16 27 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 28 H 0.02 0.60 7.81 -51.92 -0.41 0.19 16 29 H 0.08 2.30 6.04 -51.93 -0.31 1.99 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.37 4.94 9.08 45.56 0.41 5.36 16 LS Contribution 252.53 15.07 3.81 3.81 Total: -1.00 -30.95 252.53 -6.33 -37.28 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -4.32 Total: 1.14 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -0.48 Total: -6.65 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.10 Total: -42.36 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.41 Total: -10.30 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.95 -6.33 -37.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229831907.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.998 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds