Wall clock time and date at job start Mon Mar 30 2020 02:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46689 * 2 1 4 4 H 1.09000 * 109.53309 * 55.07669 * 3 2 1 5 5 C 1.53201 * 109.49906 * 294.99500 * 3 2 1 6 6 N 1.46916 * 108.77783 * 185.41544 * 5 3 2 7 7 C 1.36937 * 120.63127 * 233.58664 * 6 5 3 8 8 H 1.07997 * 120.00025 * 27.68790 * 7 6 5 9 9 C 1.38811 * 120.00180 * 207.67921 * 7 6 5 10 10 N 1.31622 * 119.99871 * 17.38431 * 9 7 6 11 11 Si 1.86794 * 120.00350 * 197.37827 * 9 7 6 12 12 H 1.48500 * 109.46972 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47404 * 120.00184 * 11 9 7 14 14 H 1.48503 * 109.47509 * 240.00243 * 11 9 7 15 15 C 1.46926 * 118.74139 * 53.60927 * 6 5 3 16 16 C 1.53194 * 108.77714 * 306.39483 * 15 6 5 17 17 C 1.53037 * 109.49803 * 175.16225 * 3 2 1 18 18 H 1.09006 * 109.46019 * 301.33176 * 17 3 2 19 19 O 1.42904 * 109.46409 * 61.29135 * 17 3 2 20 20 H 1.09005 * 109.46806 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47340 * 300.00008 * 1 2 3 22 22 H 1.08998 * 109.46935 * 60.00926 * 1 2 3 23 23 H 1.09001 * 109.47340 * 239.99992 * 2 1 3 24 24 H 1.08998 * 109.46935 * 119.99074 * 2 1 3 25 25 H 1.09002 * 109.58482 * 305.20995 * 5 3 2 26 26 H 1.09003 * 109.58168 * 65.62912 * 5 3 2 27 27 H 0.97003 * 120.00166 * 179.97438 * 10 9 7 28 28 H 1.09008 * 109.58464 * 66.17606 * 15 6 5 29 29 H 1.08997 * 109.59168 * 186.60310 * 15 6 5 30 30 H 1.08995 * 109.50125 * 174.58426 * 16 15 6 31 31 H 1.09002 * 109.49364 * 294.65041 * 16 15 6 32 32 H 0.96701 * 114.00163 * 180.02562 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6069 1.9821 0.8423 5 6 1.6350 2.1280 -1.3089 6 7 2.2414 3.4656 -1.3495 7 6 1.4693 4.5753 -1.5674 8 1 0.4292 4.5751 -1.2766 9 6 2.0234 5.7006 -2.1619 10 7 3.1594 5.6054 -2.8199 11 14 1.1570 7.3501 -2.0284 12 1 -0.0927 7.1905 -1.2422 13 1 2.0483 8.3238 -1.3481 14 1 0.8269 7.8474 -3.3882 15 6 3.6920 3.5900 -1.1523 16 6 4.0740 2.8881 0.1547 17 6 3.5655 1.4451 0.1217 18 1 3.8574 0.9361 1.0404 19 8 4.1337 0.7657 -0.9998 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5137 0.8901 25 1 1.9907 1.5396 -2.1547 26 1 0.5496 2.2173 -1.3539 27 1 3.5465 6.3916 -3.2357 28 1 4.2156 3.1208 -1.9854 29 1 3.9639 4.6439 -1.0941 30 1 5.1584 2.8894 0.2650 31 1 3.6222 3.4143 0.9957 32 1 5.0999 0.7283 -0.9888 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229831907.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:38 Heat of formation + Delta-G solvation = -66.967582 kcal Electronic energy + Delta-G solvation = -13655.562340 eV Core-core repulsion = 11422.164439 eV Total energy + Delta-G solvation = -2233.397901 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.11514 -36.66169 -35.50495 -33.42184 -31.68345 -29.66629 -27.11229 -24.86826 -23.62522 -21.89998 -20.55327 -18.74126 -17.59732 -16.88250 -16.02893 -15.78447 -15.58441 -14.79587 -14.69701 -14.43143 -13.80484 -13.54989 -13.20719 -12.84507 -12.69230 -12.49519 -12.31777 -12.13866 -12.04538 -11.86944 -11.51203 -11.34377 -10.87311 -10.61676 -10.50432 -8.65717 -7.87298 -5.32674 1.44661 1.45727 1.57301 2.50435 3.25490 3.53498 3.70235 3.93864 4.08437 4.17717 4.36211 4.53632 4.62326 4.64316 4.76199 4.91085 4.97483 5.04001 5.14851 5.20061 5.27353 5.33049 5.47198 5.50237 5.61122 5.64139 5.79699 6.38608 7.03604 7.14932 7.87513 8.40349 9.18871 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042671 B = 0.011606 C = 0.009873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.023666 B = 2411.934777 C = 2835.207640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.093 4.093 4 H 0.073 0.927 5 C 0.159 3.841 6 N -0.612 5.612 7 C -0.264 4.264 8 H 0.065 0.935 9 C -0.054 4.054 10 N -0.936 5.936 11 Si 0.969 3.031 12 H -0.266 1.266 13 H -0.288 1.288 14 H -0.292 1.292 15 C 0.183 3.817 16 C -0.167 4.167 17 C 0.121 3.879 18 H 0.071 0.929 19 O -0.575 6.575 20 H 0.068 0.932 21 H 0.056 0.944 22 H 0.041 0.959 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.003 0.997 26 H 0.046 0.954 27 H 0.249 0.751 28 H -0.005 1.005 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.013 -9.051 7.954 12.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.141 4.141 3 C -0.113 4.113 4 H 0.092 0.908 5 C 0.034 3.966 6 N -0.335 5.335 7 C -0.394 4.394 8 H 0.083 0.917 9 C -0.249 4.249 10 N -0.583 5.583 11 Si 0.797 3.203 12 H -0.190 1.190 13 H -0.215 1.215 14 H -0.219 1.219 15 C 0.058 3.942 16 C -0.206 4.206 17 C 0.063 3.937 18 H 0.089 0.911 19 O -0.382 6.382 20 H 0.087 0.913 21 H 0.075 0.925 22 H 0.060 0.940 23 H 0.073 0.927 24 H 0.093 0.907 25 H 0.021 0.979 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.013 0.987 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.586 -8.996 7.711 11.863 hybrid contribution 0.410 1.259 -0.302 1.358 sum -0.176 -7.737 7.409 10.714 Atomic orbital electron populations 1.21798 0.95426 1.02004 1.01530 1.21378 0.96074 0.94578 1.02076 1.21634 0.94009 0.96994 0.98707 0.90820 1.20923 0.95679 0.85302 0.94740 1.44364 1.04129 1.01854 1.83173 1.19587 0.95002 0.92436 1.32407 0.91714 1.25833 0.98951 1.02682 0.97421 1.70223 1.22246 1.28910 1.36888 0.85186 0.78239 0.79819 0.77092 1.19005 1.21460 1.21892 1.20446 0.83302 0.98125 0.92357 1.22749 1.00714 0.97775 0.99362 1.21692 0.93309 0.90343 0.88376 0.91088 1.86510 1.25860 1.78442 1.47417 0.91274 0.92466 0.93953 0.92665 0.90703 0.97863 0.93504 0.94150 0.98697 0.93295 0.90548 0.92120 0.76715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.67 71.98 0.70 -3.16 16 2 C -0.10 -2.92 5.21 30.60 0.16 -2.76 16 3 C -0.09 -3.29 2.17 -10.72 -0.02 -3.31 16 4 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 5 C 0.16 7.18 5.17 86.37 0.45 7.62 16 6 N -0.61 -32.61 2.99 -699.09 -2.09 -34.71 16 7 C -0.26 -15.21 9.59 84.03 0.81 -14.41 16 8 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 9 C -0.05 -3.11 4.91 84.86 0.42 -2.70 16 10 N -0.94 -57.38 11.19 21.65 0.24 -57.14 16 11 Si 0.97 46.04 29.59 68.60 2.03 48.07 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 13 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 14 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 15 C 0.18 9.26 5.07 86.36 0.44 9.69 16 16 C -0.17 -6.26 5.80 30.67 0.18 -6.08 16 17 C 0.12 3.98 3.19 30.62 0.10 4.08 16 18 H 0.07 1.87 8.14 -2.38 -0.02 1.86 16 19 O -0.58 -19.22 11.52 -148.98 -1.72 -20.94 16 20 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 21 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.04 1.21 6.70 -2.39 -0.02 1.20 16 23 H 0.05 1.70 7.86 -2.39 -0.02 1.68 16 24 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.00 0.17 7.81 -2.39 -0.02 0.15 16 26 H 0.05 2.09 6.65 -2.39 -0.02 2.07 16 27 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 28 H -0.01 -0.28 7.81 -2.38 -0.02 -0.30 16 29 H 0.05 2.78 6.04 -2.39 -0.01 2.77 16 30 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.38 9.47 9.08 -74.06 -0.67 8.80 16 Total: -1.00 -67.47 252.53 2.09 -65.37 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.42 Total: 10.37 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 3.21 Total: -11.03 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -1.85 Total: -91.85 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -1.72 Total: -20.94 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -67.47 2.09 -65.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229831907.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.594 kcal (2) G-P(sol) polarization free energy of solvation -67.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds