Wall clock time and date at job start Mon Mar 30 2020 01:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99481 * 2 1 4 4 H 1.48497 * 109.47138 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46835 * 120.00159 * 3 2 1 6 6 H 1.48505 * 109.46762 * 239.99518 * 3 2 1 7 7 C 1.37876 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00189 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99796 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46987 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00075 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.01606 * 45.53815 * 11 10 9 13 13 C 1.54268 * 110.02943 * 284.10158 * 11 10 9 14 14 C 1.54889 * 104.19514 * 217.10590 * 13 11 10 15 15 C 1.54892 * 102.74682 * 37.94142 * 14 13 11 16 16 C 1.53873 * 110.03486 * 166.93349 * 11 10 9 17 17 H 1.08998 * 110.03197 * 238.56804 * 16 11 10 18 18 C 1.52999 * 110.02869 * 359.97438 * 16 11 10 19 19 O 1.42902 * 109.46897 * 181.54029 * 18 16 11 20 20 H 0.97001 * 119.99590 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47284 * 299.99783 * 9 7 2 22 22 H 1.08999 * 109.47118 * 60.00169 * 9 7 2 23 23 H 1.00904 * 110.99499 * 303.95079 * 10 9 7 24 24 H 1.09003 * 110.48374 * 335.78074 * 13 11 10 25 25 H 1.08997 * 110.49122 * 98.42590 * 13 11 10 26 26 H 1.08998 * 110.75245 * 279.62364 * 14 13 11 27 27 H 1.09001 * 110.75475 * 156.25393 * 14 13 11 28 28 H 1.09005 * 110.48245 * 203.37973 * 15 14 13 29 29 H 1.09001 * 110.49004 * 80.73912 * 15 14 13 30 30 H 1.09005 * 109.47107 * 301.53801 * 18 16 11 31 31 H 1.08999 * 109.47396 * 61.53998 * 18 16 11 32 32 H 0.96704 * 113.99882 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0018 11 6 1.5056 -4.9070 0.0012 12 1 0.6980 -4.8932 -0.7306 13 6 0.9418 -5.2030 1.4063 14 6 1.1271 -6.7314 1.5758 15 6 2.4943 -6.9875 0.8943 16 6 2.4927 -6.0417 -0.3244 17 1 2.1636 -6.5791 -1.2137 18 6 3.8942 -5.4696 -0.5461 19 8 4.7931 -6.5283 -0.8826 20 1 -0.4849 -0.8401 -0.0004 21 1 0.6242 -2.5567 0.8902 22 1 0.6249 -2.5571 -0.8897 23 1 2.8413 -3.5489 -0.7792 24 1 1.5078 -4.6636 2.1658 25 1 -0.1145 -4.9388 1.4570 26 1 0.3328 -7.2757 1.0650 27 1 1.1649 -7.0012 2.6312 28 1 2.5709 -8.0258 0.5713 29 1 3.3109 -6.7364 1.5711 30 1 3.8661 -4.7445 -1.3596 31 1 4.2351 -4.9795 0.3658 32 1 5.7023 -6.2378 -1.0379 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231308439.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:47 Heat of formation + Delta-G solvation = -66.656786 kcal Electronic energy + Delta-G solvation = -13086.573953 eV Core-core repulsion = 10853.189530 eV Total energy + Delta-G solvation = -2233.384424 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.90144 -36.05455 -34.27104 -32.15169 -29.83216 -27.44601 -24.90855 -24.00401 -22.10462 -20.34872 -18.60664 -17.50873 -16.59278 -15.77462 -14.98214 -14.40027 -14.20387 -13.76582 -13.45515 -13.12370 -12.53424 -11.96554 -11.78672 -10.99379 -10.88487 -10.77848 -10.74722 -10.66961 -10.39801 -10.29448 -10.22480 -10.06610 -9.70332 -8.62691 -8.42554 -7.44573 -6.39127 -4.08152 3.42941 3.45506 3.64122 4.33644 4.51743 4.84092 4.86024 5.11161 5.33071 5.38289 5.56728 5.60716 5.75007 5.82484 5.85668 6.02831 6.04693 6.19411 6.24680 6.32020 6.48776 6.53487 6.70795 6.98953 7.15117 7.74400 7.80491 8.12791 8.43214 8.55249 8.85555 9.63809 11.00700 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.044665 B = 0.008411 C = 0.007388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.734394 B = 3328.028979 C = 3788.779523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.014 3.986 3 Si 1.073 2.927 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.596 4.596 8 H 0.055 0.945 9 C 0.182 3.818 10 N -0.679 5.679 11 C 0.085 3.915 12 H 0.034 0.966 13 C -0.111 4.111 14 C -0.127 4.127 15 C -0.105 4.105 16 C -0.088 4.088 17 H 0.070 0.930 18 C 0.085 3.915 19 O -0.582 6.582 20 H 0.267 0.733 21 H 0.021 0.979 22 H -0.026 1.026 23 H 0.330 0.670 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.517 -11.310 0.250 12.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.190 4.190 3 Si 0.901 3.099 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.635 4.635 8 H 0.073 0.927 9 C 0.055 3.945 10 N -0.312 5.312 11 C -0.026 4.026 12 H 0.052 0.948 13 C -0.149 4.149 14 C -0.164 4.164 15 C -0.142 4.142 16 C -0.107 4.107 17 H 0.088 0.912 18 C 0.008 3.992 19 O -0.387 6.387 20 H 0.077 0.923 21 H 0.039 0.961 22 H -0.008 1.008 23 H 0.150 0.850 24 H 0.097 0.903 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.847 -9.987 0.993 11.146 hybrid contribution 0.261 -1.298 -1.043 1.686 sum 5.109 -11.286 -0.051 12.388 Atomic orbital electron populations 1.70794 1.06885 1.30442 1.46810 1.25869 0.96505 1.02765 0.93832 0.83484 0.74794 0.75092 0.76512 1.20790 1.21362 1.21506 1.21998 0.94727 0.91343 1.55398 0.92695 1.19682 0.91309 0.88933 0.94532 1.60929 1.20669 1.00754 1.48855 1.22114 0.94083 0.89955 0.96416 0.94815 1.22390 1.00356 0.94834 0.97354 1.22507 0.97205 0.96660 1.00069 1.22251 0.97316 0.98394 0.96262 1.21827 0.93829 0.96342 0.98735 0.91197 1.22242 0.89319 0.88123 0.99533 1.86423 1.22558 1.36729 1.92953 0.92281 0.96141 1.00795 0.85027 0.90332 0.92356 0.92038 0.91796 0.92153 0.91494 0.93766 0.91838 0.77922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.15 13.65 55.43 0.76 -27.40 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 3 Si 1.07 25.43 29.90 -169.99 -5.08 20.34 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.60 -17.13 9.32 -34.44 -0.32 -17.45 16 8 H 0.05 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.18 4.79 4.58 -4.97 -0.02 4.76 16 10 N -0.68 -14.56 5.39 -106.81 -0.58 -15.14 16 11 C 0.09 1.55 3.21 -66.60 -0.21 1.34 16 12 H 0.03 0.65 8.01 -51.93 -0.42 0.23 16 13 C -0.11 -1.89 5.89 -25.07 -0.15 -2.04 16 14 C -0.13 -1.74 6.91 -24.74 -0.17 -1.91 16 15 C -0.10 -1.47 6.15 -25.07 -0.15 -1.63 16 16 C -0.09 -1.38 3.21 -89.50 -0.29 -1.67 16 17 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 18 C 0.09 1.28 5.14 37.16 0.19 1.47 16 19 O -0.58 -7.90 13.43 -35.23 -0.47 -8.37 16 20 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 21 H 0.02 0.57 7.55 -51.93 -0.39 0.18 16 22 H -0.03 -0.71 7.97 -51.93 -0.41 -1.12 16 23 H 0.33 6.80 6.05 -39.29 -0.24 6.56 16 24 H 0.08 1.46 8.05 -51.93 -0.42 1.04 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.96 7.82 -51.93 -0.41 0.56 16 30 H 0.04 0.67 6.53 -51.93 -0.34 0.33 16 31 H 0.06 1.01 7.82 -51.93 -0.41 0.60 16 32 H 0.37 3.40 9.12 45.56 0.42 3.82 16 LS Contribution 258.21 15.07 3.89 3.89 Total: -1.00 -31.47 258.21 -6.93 -38.40 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -4.23 Total: 5.08 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -1.22 Total: -16.81 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.18 Total: -42.53 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.47 Total: -8.37 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.47 -6.93 -38.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231308439.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.255 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds