Wall clock time and date at job start Mon Mar 30 2020 01:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99481 * 2 1 4 4 H 1.48497 * 109.47138 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46835 * 120.00159 * 3 2 1 6 6 H 1.48505 * 109.46762 * 239.99518 * 3 2 1 7 7 C 1.37876 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00189 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99796 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46987 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00075 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.01606 * 45.53815 * 11 10 9 13 13 C 1.54268 * 110.02943 * 284.10158 * 11 10 9 14 14 C 1.54889 * 104.19514 * 217.10590 * 13 11 10 15 15 C 1.54892 * 102.74682 * 37.94142 * 14 13 11 16 16 C 1.53873 * 110.03486 * 166.93349 * 11 10 9 17 17 H 1.08998 * 110.03197 * 238.56804 * 16 11 10 18 18 C 1.52999 * 110.02869 * 359.97438 * 16 11 10 19 19 O 1.42902 * 109.46897 * 181.54029 * 18 16 11 20 20 H 0.97001 * 119.99590 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47284 * 299.99783 * 9 7 2 22 22 H 1.08999 * 109.47118 * 60.00169 * 9 7 2 23 23 H 1.00904 * 110.99499 * 303.95079 * 10 9 7 24 24 H 1.09003 * 110.48374 * 335.78074 * 13 11 10 25 25 H 1.08997 * 110.49122 * 98.42590 * 13 11 10 26 26 H 1.08998 * 110.75245 * 279.62364 * 14 13 11 27 27 H 1.09001 * 110.75475 * 156.25393 * 14 13 11 28 28 H 1.09005 * 110.48245 * 203.37973 * 15 14 13 29 29 H 1.09001 * 110.49004 * 80.73912 * 15 14 13 30 30 H 1.09005 * 109.47107 * 301.53801 * 18 16 11 31 31 H 1.08999 * 109.47396 * 61.53998 * 18 16 11 32 32 H 0.96704 * 113.99882 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0018 11 6 1.5056 -4.9070 0.0012 12 1 0.6980 -4.8932 -0.7306 13 6 0.9418 -5.2030 1.4063 14 6 1.1271 -6.7314 1.5758 15 6 2.4943 -6.9875 0.8943 16 6 2.4927 -6.0417 -0.3244 17 1 2.1636 -6.5791 -1.2137 18 6 3.8942 -5.4696 -0.5461 19 8 4.7931 -6.5283 -0.8826 20 1 -0.4849 -0.8401 -0.0004 21 1 0.6242 -2.5567 0.8902 22 1 0.6249 -2.5571 -0.8897 23 1 2.8413 -3.5489 -0.7792 24 1 1.5078 -4.6636 2.1658 25 1 -0.1145 -4.9388 1.4570 26 1 0.3328 -7.2757 1.0650 27 1 1.1649 -7.0012 2.6312 28 1 2.5709 -8.0258 0.5713 29 1 3.3109 -6.7364 1.5711 30 1 3.8661 -4.7445 -1.3596 31 1 4.2351 -4.9795 0.3658 32 1 5.7023 -6.2378 -1.0379 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231308439.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:47 Heat of formation + Delta-G solvation = -90.221886 kcal Electronic energy + Delta-G solvation = -13087.595813 eV Core-core repulsion = 10853.189530 eV Total energy + Delta-G solvation = -2234.406283 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.25957 -37.25956 -36.14492 -34.08727 -31.11667 -29.14693 -26.73689 -25.29360 -24.16509 -21.60933 -20.04530 -19.18667 -18.22774 -17.15028 -16.38925 -15.98849 -15.62981 -15.50471 -15.12703 -14.59084 -14.14425 -13.79175 -13.31731 -12.93432 -12.56364 -12.30714 -12.02814 -11.95360 -11.89772 -11.83506 -11.69133 -11.47008 -10.88789 -10.74157 -10.62955 -9.28015 -8.73092 -6.44115 1.52648 1.61433 1.81055 2.54699 3.11378 3.15802 3.42459 3.60345 3.73909 4.08145 4.30579 4.39492 4.43455 4.53611 4.59161 4.73598 4.76763 4.85202 4.90525 4.99639 5.03355 5.16963 5.20251 5.26498 5.45666 5.73190 5.99173 6.35765 6.51212 6.64797 6.88762 7.38555 8.66642 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.044665 B = 0.008411 C = 0.007388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.734394 B = 3328.028979 C = 3788.779523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.038 4.038 3 Si 1.124 2.876 4 H -0.284 1.284 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.612 4.612 8 H 0.057 0.943 9 C 0.195 3.805 10 N -0.674 5.674 11 C 0.079 3.921 12 H 0.022 0.978 13 C -0.114 4.114 14 C -0.115 4.115 15 C -0.099 4.099 16 C -0.086 4.086 17 H 0.076 0.924 18 C 0.093 3.907 19 O -0.585 6.585 20 H 0.253 0.747 21 H -0.001 1.001 22 H -0.050 1.050 23 H 0.335 0.665 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.053 0.947 32 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.937 -12.072 0.313 13.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.236 4.236 3 Si 0.944 3.056 4 H -0.209 1.209 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.649 4.649 8 H 0.076 0.924 9 C 0.067 3.933 10 N -0.307 5.307 11 C -0.031 4.031 12 H 0.040 0.960 13 C -0.152 4.152 14 C -0.152 4.152 15 C -0.137 4.137 16 C -0.105 4.105 17 H 0.095 0.905 18 C 0.015 3.985 19 O -0.393 6.393 20 H 0.062 0.938 21 H 0.017 0.983 22 H -0.032 1.032 23 H 0.156 0.844 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 6.296 -10.792 1.050 12.538 hybrid contribution -0.170 -1.134 -1.079 1.574 sum 6.126 -11.926 -0.030 13.407 Atomic orbital electron populations 1.70930 1.07994 1.29635 1.48799 1.27514 0.96529 1.06929 0.92595 0.82856 0.74008 0.70644 0.78083 1.20895 1.19432 1.19201 1.22377 0.95075 0.92531 1.54966 0.92426 1.19365 0.91361 0.90248 0.92325 1.60848 1.19818 1.00915 1.49112 1.22264 0.94524 0.89280 0.97028 0.96036 1.22379 0.99341 0.97575 0.95908 1.22474 0.97561 0.93662 1.01540 1.22231 0.97276 0.98841 0.95311 1.21797 0.93419 0.95416 0.99894 0.90531 1.22010 0.89369 0.88265 0.98855 1.86372 1.23938 1.36207 1.92824 0.93812 0.98319 1.03204 0.84434 0.92197 0.93257 0.90570 0.89941 0.90341 0.91705 0.94283 0.92863 0.75536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.79 13.65 21.45 0.29 -58.50 16 2 C -0.04 -2.24 5.46 84.65 0.46 -1.78 16 3 Si 1.12 50.42 29.90 68.60 2.05 52.47 16 4 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.61 -35.47 9.32 25.60 0.24 -35.23 16 8 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 9 C 0.20 10.55 4.58 85.56 0.39 10.94 16 10 N -0.67 -29.25 5.39 -491.84 -2.65 -31.90 16 11 C 0.08 2.89 3.21 45.64 0.15 3.04 16 12 H 0.02 0.84 8.01 -2.39 -0.02 0.82 16 13 C -0.11 -3.86 5.89 31.67 0.19 -3.67 16 14 C -0.11 -2.89 6.91 31.89 0.22 -2.67 16 15 C -0.10 -2.53 6.15 31.67 0.19 -2.33 16 16 C -0.09 -2.56 3.21 -10.07 -0.03 -2.59 16 17 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 18 C 0.09 2.65 5.14 71.98 0.37 3.02 16 19 O -0.59 -14.42 13.43 -148.98 -2.00 -16.43 16 20 H 0.25 16.15 7.22 -92.71 -0.67 15.48 16 21 H 0.00 -0.07 7.55 -2.39 -0.02 -0.09 16 22 H -0.05 -2.87 7.97 -2.39 -0.02 -2.89 16 23 H 0.34 13.84 6.05 -89.69 -0.54 13.30 16 24 H 0.06 2.24 8.05 -2.39 -0.02 2.22 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 28 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.06 1.70 7.82 -2.39 -0.02 1.68 16 30 H 0.04 1.14 6.53 -2.38 -0.02 1.13 16 31 H 0.05 1.62 7.82 -2.39 -0.02 1.60 16 32 H 0.40 6.13 9.12 -74.05 -0.68 5.46 16 Total: -1.00 -67.25 258.21 -0.14 -67.40 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -0.01 Total: 18.23 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: 2.18 Total: -31.28 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -2.36 Total: -90.40 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -2.00 Total: -16.43 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 2.05 Total: 52.47 kcal Total: -67.25 -0.14 -67.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231308439.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.825 kcal (2) G-P(sol) polarization free energy of solvation -67.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds