Wall clock time and date at job start Mon Mar 30 2020 01:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99820 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.01641 * 325.69532 * 11 10 9 13 13 C 1.53871 * 110.03620 * 87.08876 * 11 10 9 14 14 C 1.54271 * 106.59747 * 119.28420 * 13 11 10 15 15 C 1.54885 * 104.19457 * 23.61307 * 14 13 11 16 16 C 1.54272 * 110.03076 * 204.30989 * 11 10 9 17 17 H 1.08993 * 110.48664 * 335.78090 * 16 11 10 18 18 C 1.52997 * 110.48434 * 98.42524 * 16 11 10 19 19 O 1.42908 * 109.46896 * 185.00023 * 18 16 11 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 22 22 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 23 23 H 1.00907 * 111.00089 * 303.95190 * 10 9 7 24 24 H 1.08992 * 110.03485 * 238.56830 * 13 11 10 25 25 H 1.09002 * 110.03235 * 359.95737 * 13 11 10 26 26 H 1.08994 * 110.48581 * 142.29468 * 14 13 11 27 27 H 1.08999 * 110.48581 * 264.93409 * 14 13 11 28 28 H 1.08998 * 110.75914 * 80.37434 * 15 14 13 29 29 H 1.09007 * 110.75381 * 203.56114 * 15 14 13 30 30 H 1.08996 * 109.47275 * 304.99495 * 18 16 11 31 31 H 1.08997 * 109.47551 * 65.00116 * 18 16 11 32 32 H 0.96699 * 113.99988 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 1.5054 -4.9070 0.0012 12 1 0.5832 -4.8316 0.5774 13 6 1.1912 -5.3357 -1.4428 14 6 1.9203 -6.6755 -1.6733 15 6 2.1013 -7.2591 -0.2501 16 6 2.4140 -6.0011 0.5991 17 1 3.4631 -5.7234 0.4973 18 6 2.0632 -6.2446 2.0682 19 8 2.9905 -7.1747 2.6315 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6247 -2.5571 -0.8897 23 1 2.8412 -3.5489 -0.7792 24 1 0.1167 -5.4691 -1.5672 25 1 1.5576 -4.5851 -2.1432 26 1 1.3106 -7.3414 -2.2840 27 1 2.8895 -6.5066 -2.1425 28 1 1.1829 -7.7365 0.0915 29 1 2.9334 -7.9628 -0.2241 30 1 2.1155 -5.3032 2.6151 31 1 1.0539 -6.6500 2.1385 32 1 2.8280 -7.3768 3.5631 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231308442.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:49 Heat of formation + Delta-G solvation = -99.245219 kcal Electronic energy + Delta-G solvation = -12950.199913 eV Core-core repulsion = 10715.402349 eV Total energy + Delta-G solvation = -2234.797564 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.09659 -37.43501 -36.10560 -34.01026 -31.06874 -29.19121 -26.90066 -25.06943 -23.88424 -21.41041 -21.02212 -19.03159 -18.15585 -16.88005 -16.50559 -15.72703 -15.67703 -15.40801 -15.11540 -14.42764 -14.25765 -13.87075 -13.23954 -13.02313 -12.68975 -12.42792 -12.24566 -12.06366 -11.91934 -11.76324 -11.58065 -11.52367 -10.87346 -10.74640 -10.63554 -9.19726 -8.73199 -6.44216 1.52474 1.61084 1.81014 2.54322 3.11211 3.17787 3.40184 3.67149 3.87762 3.98092 4.25937 4.40494 4.43379 4.50965 4.58811 4.68681 4.71549 4.79649 4.84894 5.00152 5.06308 5.16136 5.20120 5.24975 5.44549 5.73764 6.00456 6.37626 6.53916 6.67338 6.88828 7.37953 8.66481 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.046076 B = 0.007721 C = 0.007110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.544520 B = 3625.657813 C = 3937.386306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.037 4.037 3 Si 1.123 2.877 4 H -0.282 1.282 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.614 4.614 8 H 0.054 0.946 9 C 0.198 3.802 10 N -0.678 5.678 11 C 0.083 3.917 12 H 0.059 0.941 13 C -0.150 4.150 14 C -0.114 4.114 15 C -0.105 4.105 16 C -0.077 4.077 17 H 0.070 0.930 18 C 0.091 3.909 19 O -0.585 6.585 20 H 0.253 0.747 21 H -0.007 1.007 22 H -0.042 1.042 23 H 0.336 0.664 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.057 0.943 32 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.593 -13.720 0.487 14.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.234 4.234 3 Si 0.944 3.056 4 H -0.207 1.207 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.652 4.652 8 H 0.073 0.927 9 C 0.070 3.930 10 N -0.308 5.308 11 C -0.028 4.028 12 H 0.077 0.923 13 C -0.189 4.189 14 C -0.151 4.151 15 C -0.142 4.142 16 C -0.096 4.096 17 H 0.088 0.912 18 C 0.013 3.987 19 O -0.393 6.393 20 H 0.063 0.937 21 H 0.011 0.989 22 H -0.024 1.024 23 H 0.154 0.846 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 3.722 -12.051 0.582 12.626 hybrid contribution -0.790 -1.478 -0.261 1.696 sum 2.933 -13.528 0.321 13.846 Atomic orbital electron populations 1.70932 1.07906 1.29655 1.48783 1.27486 0.96543 1.06836 0.92562 0.82861 0.74020 0.70729 0.78037 1.20713 1.19576 1.19275 1.22402 0.95025 0.92731 1.55017 0.92729 1.19333 0.91253 0.90085 0.92311 1.60557 1.19679 1.01118 1.49470 1.22251 0.95849 0.89241 0.95414 0.92295 1.22840 1.01006 0.98710 0.96372 1.22294 1.00449 0.94948 0.97429 1.22464 1.02037 0.95861 0.93887 1.21894 0.99700 0.94537 0.93494 0.91168 1.22074 0.91844 0.91249 0.93508 1.86405 1.56416 1.64902 1.31544 0.93745 0.98910 1.02401 0.84645 0.91739 0.93217 0.89873 0.91385 0.90735 0.90501 0.95023 0.92532 0.75586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.70 13.65 21.45 0.29 -58.41 16 2 C -0.04 -2.17 5.46 84.65 0.46 -1.71 16 3 Si 1.12 50.95 29.90 68.60 2.05 53.00 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 7 C -0.61 -36.07 9.32 25.60 0.24 -35.83 16 8 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 9 C 0.20 10.75 4.58 85.56 0.39 11.14 16 10 N -0.68 -30.12 6.20 -491.81 -3.05 -33.17 16 11 C 0.08 2.97 2.80 45.64 0.13 3.10 16 12 H 0.06 2.23 7.52 -2.39 -0.02 2.21 16 13 C -0.15 -4.66 6.40 31.32 0.20 -4.46 16 14 C -0.11 -2.73 6.83 31.67 0.22 -2.51 16 15 C -0.10 -2.53 6.25 31.91 0.20 -2.33 16 16 C -0.08 -2.34 2.84 -9.69 -0.03 -2.36 16 17 H 0.07 2.37 8.05 -2.39 -0.02 2.35 16 18 C 0.09 2.54 6.32 71.98 0.46 3.00 16 19 O -0.58 -14.66 13.58 -148.98 -2.02 -16.68 16 20 H 0.25 16.12 7.22 -92.71 -0.67 15.45 16 21 H -0.01 -0.41 7.93 -2.39 -0.02 -0.43 16 22 H -0.04 -2.37 7.99 -2.38 -0.02 -2.39 16 23 H 0.34 14.47 8.16 -89.69 -0.73 13.74 16 24 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.05 1.70 7.58 -2.39 -0.02 1.68 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.64 7.97 -2.39 -0.02 1.62 16 29 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.38 8.02 -2.39 -0.02 1.36 16 32 H 0.39 6.01 9.12 -74.06 -0.68 5.34 16 Total: -1.00 -67.92 263.52 -0.67 -68.59 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -0.21 Total: 18.64 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 2.26 Total: -31.97 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -2.75 Total: -91.57 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -2.02 Total: -16.68 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 2.05 Total: 53.00 kcal Total: -67.92 -0.67 -68.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231308442.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.658 kcal (2) G-P(sol) polarization free energy of solvation -67.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds