Wall clock time and date at job start Mon Mar 30 2020 02:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47105 * 2 1 4 4 H 1.08995 * 110.32941 * 52.74816 * 3 2 1 5 5 O 1.44426 * 110.37309 * 290.38522 * 3 2 1 6 6 C 1.44419 * 105.27545 * 200.65863 * 5 3 2 7 7 C 1.54479 * 104.80615 * 40.50831 * 6 5 3 8 8 C 1.54475 * 110.36959 * 175.00443 * 3 2 1 9 9 H 1.09004 * 110.51110 * 261.58826 * 8 3 2 10 10 C 1.52997 * 110.51579 * 24.16468 * 8 3 2 11 11 N 1.46505 * 109.47212 * 184.99987 * 10 8 3 12 12 C 1.36936 * 119.99992 * 179.97438 * 11 10 8 13 13 H 1.08006 * 119.99834 * 0.02562 * 12 11 10 14 14 C 1.38801 * 120.00093 * 180.02562 * 12 11 10 15 15 N 1.31619 * 120.00176 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00265 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46725 * 59.99976 * 16 14 12 18 18 H 1.48498 * 109.47172 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46920 * 300.00189 * 16 14 12 20 20 H 1.09000 * 109.46843 * 300.00069 * 1 2 3 21 21 H 1.09003 * 109.47091 * 59.99857 * 1 2 3 22 22 H 1.08997 * 109.47048 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46907 * 240.00616 * 2 1 3 24 24 H 1.08991 * 109.47501 * 120.00094 * 2 1 3 25 25 H 1.09000 * 110.37486 * 159.33855 * 6 5 3 26 26 H 1.09000 * 110.37181 * 281.56999 * 6 5 3 27 27 H 1.08996 * 110.51575 * 217.38160 * 7 6 5 28 28 H 1.09007 * 110.51256 * 94.66393 * 7 6 5 29 29 H 1.09002 * 109.47153 * 64.99979 * 10 8 3 30 30 H 1.09001 * 109.46832 * 305.00170 * 10 8 3 31 31 H 0.96996 * 119.99606 * 0.02562 * 11 10 8 32 32 H 0.97001 * 120.00803 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5830 2.0058 0.8135 5 8 1.7630 2.0738 -1.2691 6 6 2.6808 3.1860 -1.3493 7 6 4.0107 2.6421 -0.7819 8 6 3.5794 1.4686 0.1261 9 1 3.8749 1.6536 1.1589 10 6 4.1808 0.1540 -0.3749 11 7 5.6261 0.1555 -0.1353 12 6 6.3822 -0.9252 -0.5033 13 1 5.9131 -1.7786 -0.9705 14 6 7.7515 -0.9240 -0.2759 15 7 8.3231 0.1157 0.2939 16 14 8.7831 -2.3980 -0.7786 17 1 8.6629 -2.6098 -2.2434 18 1 10.2050 -2.1491 -0.4299 19 1 8.3016 -3.6065 -0.0625 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 2.8097 3.4976 -2.3858 26 1 2.3211 4.0190 -0.7452 27 1 4.5193 3.4094 -0.1985 28 1 4.6523 2.2855 -1.5878 29 1 3.9896 0.0507 -1.4430 30 1 3.7250 -0.6804 0.1582 31 1 6.0472 0.9218 0.2846 32 1 9.2799 0.1164 0.4532 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233972871.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:13 Heat of formation + Delta-G solvation = -69.766879 kcal Electronic energy + Delta-G solvation = -13121.709547 eV Core-core repulsion = 10888.190259 eV Total energy + Delta-G solvation = -2233.519288 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.77226 -36.71488 -34.69909 -33.86611 -31.90569 -29.44513 -26.89960 -24.43412 -24.32471 -22.38696 -20.69736 -19.15241 -17.54917 -16.65044 -16.48863 -16.38025 -15.49891 -15.05501 -14.96708 -14.37391 -13.99014 -13.79145 -13.21295 -12.97867 -12.80572 -12.45782 -12.39633 -12.21146 -11.98820 -11.88170 -11.69524 -11.44111 -11.29121 -10.93202 -10.61101 -9.01038 -7.96838 -5.25803 1.45716 1.49067 1.55308 2.54481 2.98868 3.36083 3.64663 3.72800 3.86125 4.14774 4.24478 4.32694 4.37065 4.46494 4.59212 4.66329 4.79459 4.84288 4.92205 5.00963 5.13220 5.16871 5.23468 5.27896 5.28895 5.45889 5.47829 5.98078 6.25634 7.31728 8.07343 8.32045 9.26608 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.048400 B = 0.008268 C = 0.007442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.375814 B = 3385.847619 C = 3761.708397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.089 3.911 4 H 0.087 0.913 5 O -0.388 6.388 6 C 0.049 3.951 7 C -0.147 4.147 8 C -0.124 4.124 9 H 0.082 0.918 10 C 0.165 3.835 11 N -0.744 5.744 12 C -0.249 4.249 13 H 0.073 0.927 14 C -0.074 4.074 15 N -0.969 5.969 16 Si 0.975 3.025 17 H -0.279 1.279 18 H -0.293 1.293 19 H -0.277 1.277 20 H 0.064 0.936 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.009 0.991 30 H 0.030 0.970 31 H 0.374 0.626 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.779 4.080 -0.213 14.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C 0.031 3.969 4 H 0.105 0.895 5 O -0.308 6.308 6 C -0.027 4.027 7 C -0.185 4.185 8 C -0.143 4.143 9 H 0.101 0.899 10 C 0.038 3.962 11 N -0.387 5.387 12 C -0.381 4.381 13 H 0.091 0.909 14 C -0.267 4.267 15 N -0.620 5.620 16 Si 0.803 3.197 17 H -0.205 1.205 18 H -0.219 1.219 19 H -0.203 1.203 20 H 0.083 0.917 21 H 0.070 0.930 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.027 0.973 30 H 0.048 0.952 31 H 0.206 0.794 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.926 3.843 -0.451 14.454 hybrid contribution 1.354 -0.364 0.008 1.402 sum -12.572 3.479 -0.443 13.052 Atomic orbital electron populations 1.21698 0.93997 1.02147 1.02129 1.21682 0.97420 0.94299 1.02611 1.23051 0.92184 0.94942 0.86734 0.89495 1.89070 1.58835 1.44652 1.38254 1.23482 0.87173 0.89511 1.02525 1.22933 0.98579 0.97614 0.99362 1.22697 0.96130 0.95274 1.00219 0.89938 1.20874 0.83420 0.95414 0.96448 1.42577 1.03305 1.19427 1.73386 1.19598 0.90321 0.96372 1.31821 0.90943 1.25573 0.97925 1.00798 1.02365 1.69805 1.10291 1.31668 1.50230 0.85201 0.77427 0.79013 0.78065 1.20513 1.21857 1.20266 0.91739 0.92950 0.91864 0.92423 0.90192 0.88464 0.90242 0.89969 0.92735 0.97314 0.95249 0.79420 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.85 71.98 0.71 -2.34 16 2 C -0.12 -3.27 4.31 30.60 0.13 -3.13 16 3 C 0.09 2.47 3.16 31.10 0.10 2.57 16 4 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 5 O -0.39 -11.58 11.13 -148.98 -1.66 -13.24 16 6 C 0.05 1.27 7.63 72.48 0.55 1.82 16 7 C -0.15 -4.63 6.59 31.61 0.21 -4.42 16 8 C -0.12 -4.15 3.06 -9.78 -0.03 -4.18 16 9 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 10 C 0.16 6.91 4.31 86.38 0.37 7.28 16 11 N -0.74 -39.11 5.49 -343.45 -1.89 -41.00 16 12 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 13 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 14 C -0.07 -4.35 5.50 84.86 0.47 -3.89 16 15 N -0.97 -60.07 13.06 21.65 0.28 -59.78 16 16 Si 0.97 46.80 29.55 68.60 2.03 48.83 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.05 1.18 8.01 -2.39 -0.02 1.16 16 22 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.06 1.74 7.12 -2.38 -0.02 1.73 16 24 H 0.08 2.08 7.45 -2.39 -0.02 2.06 16 25 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.05 2.04 7.72 -2.38 -0.02 2.02 16 29 H 0.01 0.40 7.97 -2.39 -0.02 0.38 16 30 H 0.03 1.22 6.26 -2.39 -0.01 1.20 16 31 H 0.37 20.65 7.64 -92.71 -0.71 19.94 16 32 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -64.94 260.26 2.49 -62.45 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.38 Total: 22.55 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: 3.35 Total: -19.81 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -1.60 Total: -100.78 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -1.66 Total: -13.24 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -64.94 2.49 -62.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233972871.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.318 kcal (2) G-P(sol) polarization free energy of solvation -64.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds