Wall clock time and date at job start Mon Mar 30 2020 02:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46820 * 2 1 4 4 H 1.08996 * 110.33601 * 304.20762 * 3 2 1 5 5 O 1.44426 * 110.36818 * 66.45887 * 3 2 1 6 6 C 1.44427 * 105.27356 * 159.34101 * 5 3 2 7 7 C 1.54474 * 104.80458 * 319.48632 * 6 5 3 8 8 C 1.54475 * 110.37146 * 181.83562 * 3 2 1 9 9 H 1.08996 * 110.51289 * 98.54690 * 8 3 2 10 10 C 1.53007 * 110.51143 * 335.97227 * 8 3 2 11 11 N 1.46498 * 109.46787 * 174.99900 * 10 8 3 12 12 C 1.36935 * 119.99796 * 180.02562 * 11 10 8 13 13 H 1.07998 * 120.00202 * 0.02562 * 12 11 10 14 14 C 1.38816 * 120.00268 * 179.97438 * 12 11 10 15 15 N 1.31616 * 119.99536 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00284 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46836 * 60.00041 * 16 14 12 18 18 H 1.48497 * 109.47334 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46971 * 300.00282 * 16 14 12 20 20 H 1.08996 * 109.47579 * 299.99492 * 1 2 3 21 21 H 1.08996 * 109.47696 * 59.99900 * 1 2 3 22 22 H 1.09009 * 109.47080 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47180 * 240.00941 * 2 1 3 24 24 H 1.08998 * 109.47251 * 120.00375 * 2 1 3 25 25 H 1.09006 * 110.37325 * 78.32267 * 6 5 3 26 26 H 1.09004 * 110.37134 * 200.64830 * 6 5 3 27 27 H 1.08999 * 110.50826 * 265.33142 * 7 6 5 28 28 H 1.08992 * 110.51053 * 142.62455 * 7 6 5 29 29 H 1.08987 * 109.47210 * 295.00015 * 10 8 3 30 30 H 1.09001 * 109.46388 * 55.00300 * 10 8 3 31 31 H 0.97004 * 120.00629 * 0.02562 * 11 10 8 32 32 H 0.97009 * 119.99842 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6244 1.9912 -0.8452 5 8 1.6976 2.0967 1.2413 6 6 2.6105 3.2108 1.3486 7 6 3.9678 2.6572 0.8612 8 6 3.5838 1.4672 -0.0464 9 1 3.9326 1.6357 -1.0652 10 6 4.1576 0.1608 0.5061 11 7 5.6134 0.1590 0.3420 12 6 6.3488 -0.9154 0.7660 13 1 5.8557 -1.7617 1.2210 14 6 7.7282 -0.9175 0.6100 15 7 8.3292 0.1136 0.0550 16 14 8.7316 -2.3829 1.1890 17 1 8.2872 -3.6029 0.4682 18 1 10.1696 -2.1397 0.9097 19 1 8.5353 -2.5714 2.6489 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5137 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 2.2841 4.0317 0.7101 26 1 2.6854 3.5415 2.3846 27 1 4.5664 2.3159 1.7058 28 1 4.5064 3.4141 0.2912 29 1 3.9112 0.0746 1.5643 30 1 3.7297 -0.6821 -0.0365 31 1 6.0564 0.9189 -0.0670 32 1 9.2931 0.1121 -0.0544 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234220266.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:16 Heat of formation + Delta-G solvation = -49.069389 kcal Electronic energy + Delta-G solvation = -13123.263893 eV Core-core repulsion = 10890.642116 eV Total energy + Delta-G solvation = -2232.621777 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.51577 -34.89891 -33.43879 -32.19172 -30.10385 -28.16361 -25.10750 -23.28741 -22.42270 -21.17763 -19.28006 -17.07979 -16.22131 -15.37417 -15.25713 -14.47938 -13.91294 -13.42600 -13.25621 -13.00947 -12.89347 -12.27440 -11.76541 -11.32924 -11.27151 -10.96312 -10.85426 -10.60858 -10.52335 -10.36835 -10.13776 -9.87944 -9.67624 -9.39733 -8.82964 -6.88165 -5.74019 -3.02097 3.45819 3.49819 3.51102 4.15011 4.61310 4.90839 4.99249 5.20243 5.29537 5.37266 5.48987 5.50116 5.60450 5.76287 5.89379 5.92535 5.99893 6.10523 6.17028 6.24002 6.34441 6.42849 6.50817 6.56645 6.79950 6.87470 7.17793 7.72211 8.45358 9.56166 10.15083 10.49999 11.49058 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.048537 B = 0.008269 C = 0.007443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.741923 B = 3385.206079 C = 3760.922986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.083 3.917 4 H 0.063 0.937 5 O -0.373 6.373 6 C 0.046 3.954 7 C -0.147 4.147 8 C -0.125 4.125 9 H 0.081 0.919 10 C 0.161 3.839 11 N -0.733 5.733 12 C -0.238 4.238 13 H 0.069 0.931 14 C -0.015 4.015 15 N -0.935 5.935 16 Si 0.907 3.093 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.286 1.286 20 H 0.058 0.942 21 H 0.048 0.952 22 H 0.051 0.949 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.022 0.978 30 H 0.025 0.975 31 H 0.383 0.617 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.613 4.123 -0.333 13.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C 0.025 3.975 4 H 0.081 0.919 5 O -0.293 6.293 6 C -0.031 4.031 7 C -0.185 4.185 8 C -0.144 4.144 9 H 0.099 0.901 10 C 0.034 3.966 11 N -0.377 5.377 12 C -0.369 4.369 13 H 0.087 0.913 14 C -0.211 4.211 15 N -0.584 5.584 16 Si 0.738 3.262 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.213 1.213 20 H 0.077 0.923 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.216 0.784 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.730 3.899 -0.111 13.314 hybrid contribution 1.034 -0.389 -0.010 1.105 sum -11.696 3.510 -0.121 12.211 Atomic orbital electron populations 1.21743 0.95955 1.01171 1.01737 1.21678 0.95704 0.94905 1.03483 1.23002 0.93720 0.93866 0.86927 0.91948 1.89080 1.56686 1.42988 1.40502 1.23377 0.88942 0.89456 1.01348 1.22970 0.97318 0.97475 1.00694 1.22733 0.94397 0.97036 1.00241 0.90061 1.20793 0.85772 0.92895 0.97120 1.42389 1.00364 1.21332 1.73650 1.19201 0.89194 0.96290 1.32229 0.91268 1.24735 0.96568 0.97972 1.01823 1.69653 1.08962 1.30142 1.49672 0.86262 0.79330 0.82157 0.78423 1.21293 1.21688 1.21288 0.92318 0.93282 0.92995 0.90462 0.90382 0.93004 0.89583 0.89705 0.91010 0.96017 0.95733 0.78385 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.83 37.16 0.37 -1.41 16 2 C -0.12 -1.69 4.35 -26.73 -0.12 -1.81 16 3 C 0.08 1.23 3.19 -25.95 -0.08 1.15 16 4 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 5 O -0.37 -5.92 11.00 -35.23 -0.39 -6.31 16 6 C 0.05 0.63 7.63 37.93 0.29 0.92 16 7 C -0.15 -2.36 6.60 -25.16 -0.17 -2.53 16 8 C -0.13 -2.14 3.05 -89.05 -0.27 -2.41 16 9 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 10 C 0.16 3.37 4.28 -4.04 -0.02 3.35 16 11 N -0.73 -19.00 5.50 -59.91 -0.33 -19.33 16 12 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 13 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 14 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 15 N -0.94 -28.65 13.06 55.49 0.72 -27.93 16 16 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H 0.06 0.73 7.91 -51.93 -0.41 0.32 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 23 H 0.08 1.05 7.61 -51.93 -0.40 0.65 16 24 H 0.08 1.20 6.89 -51.93 -0.36 0.84 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.08 1.56 7.73 -51.93 -0.40 1.16 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.02 0.48 7.94 -51.94 -0.41 0.07 16 30 H 0.02 0.51 6.31 -51.93 -0.33 0.18 16 31 H 0.38 10.35 7.64 -40.82 -0.31 10.04 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 260.02 15.07 3.92 3.92 Total: -1.00 -30.77 260.02 -6.47 -37.23 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.12 Total: 4.92 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -0.25 Total: -10.22 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.40 Total: -47.26 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.39 Total: -6.31 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.77 -6.47 -37.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234220266.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.838 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds