Wall clock time and date at job start Mon Mar 30 2020 02:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47445 * 2 1 4 4 H 1.09001 * 109.50063 * 304.93769 * 3 2 1 5 5 C 1.53194 * 109.49627 * 65.00344 * 3 2 1 6 6 N 1.46923 * 108.77818 * 174.58488 * 5 3 2 7 7 C 1.36935 * 120.63013 * 126.37083 * 6 5 3 8 8 H 1.07997 * 120.00003 * 332.24113 * 7 6 5 9 9 C 1.38811 * 119.99848 * 152.25074 * 7 6 5 10 10 N 1.31621 * 119.99881 * 335.23772 * 9 7 6 11 11 Si 1.86805 * 120.00093 * 155.52228 * 9 7 6 12 12 H 1.48497 * 109.47162 * 179.71744 * 11 9 7 13 13 H 1.48501 * 109.46645 * 299.71742 * 11 9 7 14 14 H 1.48500 * 109.47160 * 59.71867 * 11 9 7 15 15 C 1.46924 * 118.73831 * 306.64529 * 6 5 3 16 16 C 1.52763 * 109.00800 * 53.30883 * 15 6 5 17 17 C 1.53039 * 109.38354 * 305.58508 * 16 15 6 18 18 H 1.09003 * 109.45109 * 181.25302 * 17 16 15 19 19 O 1.42905 * 109.46346 * 301.22270 * 17 16 15 20 20 H 1.08996 * 109.47208 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.46578 * 299.99445 * 1 2 3 22 22 H 1.09004 * 109.47264 * 59.99034 * 1 2 3 23 23 H 1.09006 * 109.46578 * 240.00555 * 2 1 3 24 24 H 1.09004 * 109.47264 * 120.00966 * 2 1 3 25 25 H 1.09006 * 109.58170 * 54.79940 * 5 3 2 26 26 H 1.09001 * 109.58948 * 294.37791 * 5 3 2 27 27 H 0.96997 * 120.00123 * 354.51925 * 10 9 7 28 28 H 1.09002 * 109.59010 * 173.13891 * 15 6 5 29 29 H 1.08994 * 109.59213 * 293.56747 * 15 6 5 30 30 H 1.09003 * 109.56839 * 185.55247 * 16 15 6 31 31 H 1.09000 * 109.39069 * 65.51311 * 16 15 6 32 32 H 0.96706 * 113.99499 * 300.06719 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6066 1.9816 -0.8423 5 6 1.6352 2.1279 1.3088 6 7 2.2417 3.4655 1.3495 7 6 1.4696 4.5753 1.5666 8 1 0.4300 4.5755 1.2740 9 6 2.0231 5.7002 2.1625 10 7 3.0768 5.5807 2.9422 11 14 1.2679 7.3825 1.8643 12 1 2.0351 8.4095 2.6138 13 1 1.3107 7.6940 0.4129 14 1 -0.1425 7.3814 2.3289 15 6 3.6915 3.5902 1.1467 16 6 4.0742 2.8879 -0.1548 17 6 3.5656 1.4448 -0.1218 18 1 3.8574 0.9360 -1.0405 19 8 4.1338 0.7653 0.9997 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5140 -0.8899 23 1 1.8932 -0.5138 -0.8901 24 1 1.8934 -0.5140 0.8899 25 1 1.9910 1.5395 2.1547 26 1 0.5498 2.2173 1.3540 27 1 3.4184 4.7004 3.1644 28 1 3.9626 4.6441 1.0849 29 1 4.2184 3.1236 1.9790 30 1 5.1586 2.8889 -0.2651 31 1 3.6224 3.4136 -0.9960 32 1 5.1000 0.7282 0.9889 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253309825.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:41 Heat of formation + Delta-G solvation = -70.601880 kcal Electronic energy + Delta-G solvation = -13694.945905 eV Core-core repulsion = 11461.390409 eV Total energy + Delta-G solvation = -2233.555496 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.28824 -36.91972 -35.66468 -33.44636 -31.70860 -29.71668 -26.94264 -25.02623 -23.66893 -21.92854 -20.64225 -19.40470 -17.71529 -16.58693 -16.29159 -15.79302 -15.47155 -15.15911 -14.83436 -14.48474 -13.94344 -13.89284 -13.01192 -12.79098 -12.72607 -12.53645 -12.40288 -12.14760 -11.91985 -11.74321 -11.57181 -11.34357 -10.98570 -10.70322 -10.45492 -8.91841 -8.25845 -5.41191 1.56271 1.64285 1.83413 2.64924 3.19242 3.44486 3.54445 3.82208 3.96480 4.08684 4.24311 4.40996 4.49531 4.54324 4.64801 4.74246 4.85938 4.93548 5.04302 5.12268 5.15271 5.17044 5.19666 5.39507 5.43450 5.58870 5.81000 6.37217 6.95424 7.06369 7.78524 8.24255 8.97899 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042570 B = 0.011652 C = 0.010007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.577456 B = 2402.495122 C = 2797.342395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.103 4.103 3 C -0.093 4.093 4 H 0.072 0.928 5 C 0.161 3.839 6 N -0.620 5.620 7 C -0.358 4.358 8 H 0.049 0.951 9 C -0.078 4.078 10 N -0.943 5.943 11 Si 1.117 2.883 12 H -0.291 1.291 13 H -0.278 1.278 14 H -0.276 1.276 15 C 0.163 3.837 16 C -0.162 4.162 17 C 0.122 3.878 18 H 0.076 0.924 19 O -0.575 6.575 20 H 0.070 0.930 21 H 0.039 0.961 22 H 0.056 0.944 23 H 0.077 0.923 24 H 0.055 0.945 25 H 0.004 0.996 26 H 0.043 0.957 27 H 0.252 0.748 28 H 0.039 0.961 29 H 0.002 0.998 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.107 -9.308 -8.490 12.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.141 4.141 3 C -0.113 4.113 4 H 0.090 0.910 5 C 0.036 3.964 6 N -0.344 5.344 7 C -0.488 4.488 8 H 0.067 0.933 9 C -0.274 4.274 10 N -0.585 5.585 11 Si 0.941 3.059 12 H -0.216 1.216 13 H -0.204 1.204 14 H -0.201 1.201 15 C 0.037 3.963 16 C -0.201 4.201 17 C 0.063 3.937 18 H 0.093 0.907 19 O -0.382 6.382 20 H 0.089 0.911 21 H 0.058 0.942 22 H 0.075 0.925 23 H 0.095 0.905 24 H 0.074 0.926 25 H 0.022 0.978 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.020 0.980 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.382 -7.751 -8.018 11.158 hybrid contribution 0.463 -1.355 0.001 1.432 sum 0.081 -9.106 -8.017 12.132 Atomic orbital electron populations 1.21797 0.95472 1.02086 1.01420 1.21379 0.96047 0.94419 1.02225 1.21625 0.94140 0.97097 0.98475 0.90982 1.20907 0.95568 0.85006 0.94906 1.44381 1.03877 1.02364 1.83777 1.20269 0.96129 0.94906 1.37510 0.93317 1.27286 0.99407 1.06670 0.94031 1.70893 1.28309 1.26056 1.33196 0.82847 0.75002 0.71626 0.76475 1.21649 1.20379 1.20148 1.20570 0.83983 0.97642 0.94059 1.22598 1.01085 0.97806 0.98654 1.21684 0.93153 0.90174 0.88645 0.90666 1.86513 1.25997 1.78415 1.47305 0.91083 0.94172 0.92510 0.90481 0.92572 0.97762 0.93844 0.93809 0.94257 0.97975 0.89986 0.92000 0.76547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.67 71.98 0.70 -3.21 16 2 C -0.10 -2.91 5.21 30.59 0.16 -2.75 16 3 C -0.09 -3.29 2.17 -10.72 -0.02 -3.31 16 4 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 5 C 0.16 7.34 5.17 86.36 0.45 7.79 16 6 N -0.62 -33.09 2.85 -699.93 -2.00 -35.09 16 7 C -0.36 -21.08 9.49 84.03 0.80 -20.28 16 8 H 0.05 2.86 7.94 -2.91 -0.02 2.83 16 9 C -0.08 -4.61 4.69 84.86 0.40 -4.21 16 10 N -0.94 -59.63 12.42 21.65 0.27 -59.36 16 11 Si 1.12 52.26 29.98 68.60 2.06 54.32 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 13 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 14 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 15 C 0.16 8.06 4.42 86.22 0.38 8.45 16 16 C -0.16 -5.97 5.79 30.53 0.18 -5.79 16 17 C 0.12 3.93 3.19 30.62 0.10 4.02 16 18 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 19 O -0.58 -18.63 11.52 -148.98 -1.72 -20.35 16 20 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.04 1.18 6.70 -2.38 -0.02 1.16 16 22 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 23 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 24 H 0.06 1.71 7.86 -2.38 -0.02 1.70 16 25 H 0.00 0.21 7.81 -2.38 -0.02 0.20 16 26 H 0.04 1.99 6.65 -2.39 -0.02 1.98 16 27 H 0.25 16.42 6.69 -92.71 -0.62 15.80 16 28 H 0.04 2.19 6.31 -2.39 -0.02 2.18 16 29 H 0.00 0.12 7.53 -2.39 -0.02 0.10 16 30 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.39 9.03 9.08 -74.05 -0.67 8.36 16 Total: -1.00 -69.67 251.47 2.31 -67.37 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.57 Total: 12.41 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 3.13 Total: -19.30 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -1.73 Total: -94.45 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -1.72 Total: -20.35 kcal Atomic # 14 Polarization: 52.26 SS G_CDS: 2.06 Total: 54.32 kcal Total: -69.67 2.31 -67.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253309825.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.235 kcal (2) G-P(sol) polarization free energy of solvation -69.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds