Wall clock time and date at job start Mon Mar 30 2020 02:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00083 * 2 1 4 4 H 1.48495 * 109.46910 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47081 * 300.00069 * 3 2 1 6 6 H 1.48493 * 109.47178 * 60.00303 * 3 2 1 7 7 C 1.37869 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00614 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47721 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47153 * 54.99889 * 10 9 7 12 12 N 1.46896 * 109.46848 * 294.99917 * 10 9 7 13 13 C 1.53000 * 109.47060 * 175.00208 * 10 9 7 14 14 C 1.53180 * 109.54422 * 299.82018 * 13 10 9 15 15 C 1.53101 * 109.15755 * 183.24414 * 14 13 10 16 16 O 1.42904 * 109.48776 * 57.47561 * 15 14 13 17 17 C 1.42896 * 114.09811 * 298.89015 * 16 15 14 18 18 C 1.53089 * 109.41815 * 61.15512 * 17 16 15 19 19 H 0.97006 * 119.99397 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46692 * 59.99825 * 9 7 2 21 21 H 1.09008 * 109.46977 * 300.00328 * 9 7 2 22 22 H 1.00900 * 111.00550 * 299.99950 * 12 10 9 23 23 H 1.00896 * 111.00310 * 63.95536 * 12 10 9 24 24 H 1.08992 * 109.54702 * 59.99862 * 13 10 9 25 25 H 1.09002 * 109.52005 * 303.06570 * 14 13 10 26 26 H 1.09000 * 109.51859 * 63.24726 * 14 13 10 27 27 H 1.08997 * 109.40766 * 297.49313 * 15 14 13 28 28 H 1.09000 * 109.48023 * 177.49886 * 15 14 13 29 29 H 1.08999 * 109.48187 * 301.17567 * 17 16 15 30 30 H 1.09003 * 109.48328 * 181.14255 * 17 16 15 31 31 H 1.09004 * 109.52633 * 182.48618 * 18 17 16 32 32 H 1.08997 * 109.51938 * 62.29869 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9294 -3.5552 0.8413 12 7 3.0082 -3.6539 -1.2558 13 6 1.4843 -4.9835 0.1251 14 6 0.6914 -4.9956 1.4357 15 6 -0.0012 -6.3521 1.5914 16 8 0.9768 -7.3935 1.5565 17 6 1.7152 -7.4599 0.3349 18 6 2.4785 -6.1488 0.1298 19 1 -0.4849 0.8402 0.0004 20 1 0.6240 -2.5566 -0.8903 21 1 0.6246 -2.5571 0.8897 22 1 2.3960 -3.7517 -2.0518 23 1 3.5700 -2.8193 -1.3320 24 1 0.7998 -5.0916 -0.7161 25 1 1.3702 -4.8363 2.2736 26 1 -0.0567 -4.2032 1.4161 27 1 -0.7106 -6.4922 0.7758 28 1 -0.5309 -6.3827 2.5435 29 1 1.0282 -7.6145 -0.4971 30 1 2.4218 -8.2885 0.3818 31 1 3.0072 -6.1803 -0.8229 32 1 3.1945 -6.0136 0.9404 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259413444.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:04 Heat of formation + Delta-G solvation = -75.585616 kcal Electronic energy + Delta-G solvation = -13206.231931 eV Core-core repulsion = 10972.460324 eV Total energy + Delta-G solvation = -2233.771607 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.15450 -36.08087 -32.84105 -31.52375 -30.79995 -27.92667 -25.53045 -23.40231 -22.62047 -20.21676 -19.34697 -16.69200 -15.72952 -15.65704 -14.77832 -14.63043 -14.28675 -14.05374 -13.43223 -12.69890 -12.34228 -12.17613 -11.87374 -11.59456 -11.13062 -10.96084 -10.84375 -10.51060 -10.21153 -10.02915 -9.97372 -9.69941 -9.25681 -8.94755 -8.45296 -7.65094 -6.08178 -4.11373 3.25286 3.33508 3.37044 4.13512 4.38855 5.10118 5.17497 5.27712 5.35414 5.37171 5.50052 5.65328 5.81557 5.87278 5.98252 6.14504 6.28519 6.38150 6.40682 6.58400 6.67178 6.89756 6.94285 7.44373 7.50192 7.61779 7.87261 8.13123 8.25913 8.38977 8.96034 9.53613 11.02688 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.061041 B = 0.008201 C = 0.007551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.599712 B = 3413.450155 C = 3707.080176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.055 0.945 9 C -0.009 4.009 10 C 0.097 3.903 11 H 0.064 0.936 12 N -0.843 5.843 13 C -0.078 4.078 14 C -0.151 4.151 15 C 0.062 3.938 16 O -0.391 6.391 17 C 0.059 3.941 18 C -0.139 4.139 19 H 0.260 0.740 20 H 0.013 0.987 21 H 0.023 0.977 22 H 0.326 0.674 23 H 0.342 0.658 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.045 0.955 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.633 -10.427 0.135 10.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.047 4.047 10 C -0.014 4.014 11 H 0.082 0.918 12 N -0.370 5.370 13 C -0.097 4.097 14 C -0.189 4.189 15 C -0.014 4.014 16 O -0.310 6.310 17 C -0.018 4.018 18 C -0.176 4.176 19 H 0.070 0.930 20 H 0.031 0.969 21 H 0.041 0.959 22 H 0.137 0.863 23 H 0.155 0.845 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.881 -11.097 0.580 11.271 hybrid contribution -0.273 2.212 -0.450 2.274 sum 1.608 -8.885 0.129 9.031 Atomic orbital electron populations 1.69977 1.06072 1.26527 1.50607 1.25021 0.94832 0.99293 0.95201 0.86554 0.80138 0.83833 0.77594 1.19715 1.21058 1.21004 1.21235 0.92902 0.91074 1.50866 0.92676 1.19880 0.94821 0.92436 0.97550 1.21495 0.94859 0.93022 0.92051 0.91764 1.59214 1.28088 1.45503 1.04164 1.21167 0.96399 0.95403 0.96729 1.22268 1.00765 0.97334 0.98531 1.22593 0.90188 0.87175 1.01483 1.87857 1.52344 1.53137 1.37666 1.22628 0.94494 0.98163 0.86500 1.22110 0.98502 0.94000 1.03030 0.93043 0.96914 0.95914 0.86338 0.84499 0.92147 0.91353 0.89891 0.93646 0.89374 0.93806 0.89652 0.90161 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.22 8.55 -34.44 -0.29 -14.52 16 8 H 0.06 1.47 7.15 -52.48 -0.37 1.09 16 9 C -0.01 -0.21 4.41 -27.89 -0.12 -0.33 16 10 C 0.10 1.95 2.34 -67.72 -0.16 1.80 16 11 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 12 N -0.84 -15.62 8.51 -4.67 -0.04 -15.66 16 13 C -0.08 -1.34 2.01 -90.43 -0.18 -1.52 16 14 C -0.15 -2.52 4.99 -26.59 -0.13 -2.65 16 15 C 0.06 0.90 6.84 37.21 0.25 1.16 16 16 O -0.39 -6.05 10.77 -35.23 -0.38 -6.43 16 17 C 0.06 0.80 6.84 37.20 0.25 1.06 16 18 C -0.14 -2.10 5.22 -26.59 -0.14 -2.24 16 19 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 20 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 21 H 0.02 0.60 6.26 -51.92 -0.32 0.27 16 22 H 0.33 5.84 9.00 -39.29 -0.35 5.49 16 23 H 0.34 6.63 7.90 -39.29 -0.31 6.32 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.08 1.50 6.51 -51.93 -0.34 1.16 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 1.20 7.72 -51.93 -0.40 0.80 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 256.20 15.07 3.86 3.86 Total: -1.00 -28.97 256.20 -6.50 -35.47 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.04 Total: 7.76 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -0.62 Total: -15.73 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.70 Total: -41.27 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.38 Total: -6.43 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.97 -6.50 -35.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259413444.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.113 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds