Wall clock time and date at job start Mon Mar 30 2020 02:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00083 * 2 1 4 4 H 1.48495 * 109.46910 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47081 * 300.00069 * 3 2 1 6 6 H 1.48493 * 109.47178 * 60.00303 * 3 2 1 7 7 C 1.37869 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00614 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47721 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47153 * 54.99889 * 10 9 7 12 12 N 1.46896 * 109.46848 * 294.99917 * 10 9 7 13 13 C 1.53000 * 109.47060 * 175.00208 * 10 9 7 14 14 C 1.53180 * 109.54422 * 299.82018 * 13 10 9 15 15 C 1.53101 * 109.15755 * 183.24414 * 14 13 10 16 16 O 1.42904 * 109.48776 * 57.47561 * 15 14 13 17 17 C 1.42896 * 114.09811 * 298.89015 * 16 15 14 18 18 C 1.53089 * 109.41815 * 61.15512 * 17 16 15 19 19 H 0.97006 * 119.99397 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46692 * 59.99825 * 9 7 2 21 21 H 1.09008 * 109.46977 * 300.00328 * 9 7 2 22 22 H 1.00900 * 111.00550 * 299.99950 * 12 10 9 23 23 H 1.00896 * 111.00310 * 63.95536 * 12 10 9 24 24 H 1.08992 * 109.54702 * 59.99862 * 13 10 9 25 25 H 1.09002 * 109.52005 * 303.06570 * 14 13 10 26 26 H 1.09000 * 109.51859 * 63.24726 * 14 13 10 27 27 H 1.08997 * 109.40766 * 297.49313 * 15 14 13 28 28 H 1.09000 * 109.48023 * 177.49886 * 15 14 13 29 29 H 1.08999 * 109.48187 * 301.17567 * 17 16 15 30 30 H 1.09003 * 109.48328 * 181.14255 * 17 16 15 31 31 H 1.09004 * 109.52633 * 182.48618 * 18 17 16 32 32 H 1.08997 * 109.51938 * 62.29869 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9294 -3.5552 0.8413 12 7 3.0082 -3.6539 -1.2558 13 6 1.4843 -4.9835 0.1251 14 6 0.6914 -4.9956 1.4357 15 6 -0.0012 -6.3521 1.5914 16 8 0.9768 -7.3935 1.5565 17 6 1.7152 -7.4599 0.3349 18 6 2.4785 -6.1488 0.1298 19 1 -0.4849 0.8402 0.0004 20 1 0.6240 -2.5566 -0.8903 21 1 0.6246 -2.5571 0.8897 22 1 2.3960 -3.7517 -2.0518 23 1 3.5700 -2.8193 -1.3320 24 1 0.7998 -5.0916 -0.7161 25 1 1.3702 -4.8363 2.2736 26 1 -0.0567 -4.2032 1.4161 27 1 -0.7106 -6.4922 0.7758 28 1 -0.5309 -6.3827 2.5435 29 1 1.0282 -7.6145 -0.4971 30 1 2.4218 -8.2885 0.3818 31 1 3.0072 -6.1803 -0.8229 32 1 3.1945 -6.0136 0.9404 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259413444.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:04 Heat of formation + Delta-G solvation = -95.824239 kcal Electronic energy + Delta-G solvation = -13207.109544 eV Core-core repulsion = 10972.460324 eV Total energy + Delta-G solvation = -2234.649220 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.43450 -37.63421 -34.81312 -33.05937 -32.02534 -29.82266 -27.11112 -24.95480 -24.07864 -21.71916 -20.86241 -18.65840 -17.11993 -16.87639 -16.60080 -16.20775 -15.62894 -15.44323 -14.92827 -14.23890 -14.18043 -14.00078 -13.24550 -13.08512 -12.92810 -12.62242 -12.31817 -12.18197 -11.95476 -11.68098 -11.36225 -11.19047 -11.01358 -10.61430 -10.34503 -9.31325 -8.23233 -6.33785 1.36212 1.37841 1.49807 2.37135 3.02358 3.10154 3.72484 3.85181 4.04269 4.16526 4.25064 4.42021 4.53557 4.58119 4.75823 4.83423 4.88941 4.95785 4.99454 5.09075 5.27139 5.36057 5.41555 5.48421 5.66962 5.76753 6.18726 6.31189 6.45644 6.75328 6.83775 7.35681 8.87987 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.061041 B = 0.008201 C = 0.007551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.599712 B = 3413.450155 C = 3707.080176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.961 3.039 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.059 0.941 9 C 0.000 4.000 10 C 0.109 3.891 11 H 0.052 0.948 12 N -0.828 5.828 13 C -0.075 4.075 14 C -0.149 4.149 15 C 0.067 3.933 16 O -0.402 6.402 17 C 0.058 3.942 18 C -0.130 4.130 19 H 0.262 0.738 20 H -0.013 1.013 21 H -0.001 1.001 22 H 0.332 0.668 23 H 0.339 0.661 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.105 0.895 29 H 0.056 0.944 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.543 -11.153 -0.102 11.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.078 0.922 9 C -0.038 4.038 10 C -0.003 4.003 11 H 0.070 0.930 12 N -0.355 5.355 13 C -0.094 4.094 14 C -0.187 4.187 15 C -0.010 4.010 16 O -0.321 6.321 17 C -0.018 4.018 18 C -0.168 4.168 19 H 0.071 0.929 20 H 0.006 0.994 21 H 0.017 0.983 22 H 0.143 0.857 23 H 0.151 0.849 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.123 0.877 29 H 0.074 0.926 30 H 0.128 0.872 31 H 0.104 0.896 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.804 -11.840 0.335 12.172 hybrid contribution -0.565 2.435 -0.387 2.529 sum 2.239 -9.406 -0.052 9.668 Atomic orbital electron populations 1.70104 1.07720 1.27529 1.51747 1.25917 0.95681 1.03164 0.94886 0.85456 0.79174 0.79179 0.77574 1.18595 1.20569 1.20766 1.21632 0.93323 0.92218 1.50212 0.92233 1.19791 0.95028 0.93899 0.95123 1.21303 0.93654 0.92979 0.92383 0.92967 1.59209 1.27550 1.45001 1.03717 1.21110 0.96664 0.94674 0.96928 1.22218 1.00168 0.98401 0.97959 1.22600 0.89997 0.85450 1.02928 1.87854 1.52583 1.52981 1.38665 1.22766 0.94919 0.97782 0.86346 1.22027 0.97814 0.93897 1.03025 0.92930 0.99423 0.98261 0.85681 0.84905 0.92288 0.92200 0.92022 0.92597 0.87698 0.92584 0.87219 0.89587 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.80 13.29 21.44 0.28 -55.51 16 2 C 0.00 0.08 5.46 84.65 0.46 0.55 16 3 Si 0.96 43.81 29.54 68.60 2.03 45.83 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.54 -29.40 8.55 25.60 0.22 -29.18 16 8 H 0.06 3.15 7.15 -2.91 -0.02 3.13 16 9 C 0.00 0.01 4.41 29.85 0.13 0.14 16 10 C 0.11 4.38 2.34 44.92 0.10 4.49 16 11 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 12 N -0.83 -30.02 8.51 -168.69 -1.44 -31.45 16 13 C -0.07 -2.53 2.01 -10.67 -0.02 -2.55 16 14 C -0.15 -4.97 4.99 30.69 0.15 -4.82 16 15 C 0.07 1.83 6.84 72.02 0.49 2.32 16 16 O -0.40 -11.47 10.77 -148.98 -1.60 -13.07 16 17 C 0.06 1.42 6.84 72.01 0.49 1.91 16 18 C -0.13 -3.70 5.22 30.68 0.16 -3.54 16 19 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 20 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 21 H 0.00 -0.05 6.26 -2.38 -0.01 -0.06 16 22 H 0.33 11.59 9.00 -89.69 -0.81 10.78 16 23 H 0.34 12.83 7.90 -89.70 -0.71 12.12 16 24 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.06 2.30 6.51 -2.39 -0.02 2.28 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 28 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.09 2.36 7.72 -2.38 -0.02 2.34 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -61.22 256.20 1.06 -60.16 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: -0.41 Total: 24.71 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 2.19 Total: -30.67 kcal Atomic # 7 Polarization: -85.81 SS G_CDS: -1.15 Total: -86.96 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -1.60 Total: -13.07 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -61.22 1.06 -60.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259413444.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.662 kcal (2) G-P(sol) polarization free energy of solvation -61.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds