Wall clock time and date at job start Mon Mar 30 2020 01:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00210 * 2 1 4 4 H 1.48505 * 109.47392 * 264.98989 * 3 2 1 5 5 H 1.48504 * 109.47166 * 24.98922 * 3 2 1 6 6 H 1.48497 * 109.47131 * 144.99156 * 3 2 1 7 7 C 1.37875 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99874 * 186.18967 * 7 2 1 9 9 C 1.50701 * 120.00309 * 6.19297 * 7 2 1 10 10 O 1.42904 * 109.47274 * 55.59500 * 9 7 2 11 11 C 1.53007 * 109.46718 * 295.59461 * 9 7 2 12 12 C 1.53006 * 109.46968 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.46739 * 60.00146 * 12 11 9 14 14 C 1.52998 * 109.47433 * 300.00046 * 13 12 11 15 15 H 1.09003 * 109.46763 * 299.99669 * 14 13 12 16 16 C 1.53006 * 109.47082 * 180.02562 * 14 13 12 17 17 N 1.46902 * 109.46873 * 65.00094 * 16 14 13 18 18 C 1.52996 * 109.47340 * 175.59849 * 9 7 2 19 19 H 0.97006 * 119.99573 * 0.02562 * 1 2 3 20 20 H 0.96703 * 113.99769 * 303.97185 * 10 9 7 21 21 H 1.08999 * 109.47063 * 60.00108 * 11 9 7 22 22 H 1.08994 * 109.47291 * 300.00070 * 11 9 7 23 23 H 1.08999 * 109.47067 * 300.00605 * 12 11 9 24 24 H 1.09001 * 109.47005 * 180.02562 * 12 11 9 25 25 H 1.09000 * 109.47320 * 179.97438 * 13 12 11 26 26 H 1.09007 * 109.46825 * 60.00141 * 13 12 11 27 27 H 1.08996 * 109.46753 * 184.99811 * 16 14 13 28 28 H 1.08995 * 109.47314 * 305.00037 * 16 14 13 29 29 H 1.00896 * 111.00693 * 56.04332 * 17 16 14 30 30 H 1.00902 * 110.99748 * 180.02562 * 17 16 14 31 31 H 1.08999 * 109.47138 * 60.00107 * 18 9 7 32 32 H 1.09001 * 109.47229 * 299.99750 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6026 1.9852 -1.3947 5 1 1.3977 2.6809 0.5915 6 1 3.4898 1.4729 0.8032 7 6 2.0045 -1.1941 0.0005 8 1 3.0798 -1.1968 0.1014 9 6 1.2575 -2.4954 -0.1397 10 8 0.4679 -2.4656 -1.3304 11 6 0.3451 -2.6929 1.0726 12 6 -0.4137 -4.0138 0.9300 13 6 0.5854 -5.1697 0.8500 14 6 1.4978 -4.9723 -0.3621 15 1 0.8955 -4.9492 -1.2703 16 6 2.4965 -6.1287 -0.4424 17 7 1.7747 -7.3821 -0.6994 18 6 2.2570 -3.6511 -0.2193 19 1 -0.4850 0.8401 -0.0004 20 1 -0.1470 -1.7207 -1.3760 21 1 -0.3669 -1.8695 1.1294 22 1 0.9474 -2.7156 1.9808 23 1 -1.0160 -3.9906 0.0218 24 1 -1.0641 -4.1543 1.7934 25 1 0.0449 -6.1109 0.7489 26 1 1.1877 -5.1929 1.7583 27 1 3.2025 -5.9434 -1.2520 28 1 3.0375 -6.2077 0.5005 29 1 1.2138 -7.3117 -1.5351 30 1 2.4128 -8.1616 -0.7564 31 1 2.8592 -3.6739 0.6890 32 1 2.9070 -3.5105 -1.0829 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259505313.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:43 Heat of formation + Delta-G solvation = -98.905368 kcal Electronic energy + Delta-G solvation = -13650.038832 eV Core-core repulsion = 11415.256005 eV Total energy + Delta-G solvation = -2234.782827 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.05414 -36.82454 -34.40021 -34.03076 -31.43591 -30.39557 -26.84384 -25.31350 -22.77439 -21.65710 -20.34273 -18.80493 -16.98272 -16.70249 -16.25325 -15.52588 -15.43928 -15.34281 -14.84645 -14.13576 -13.69865 -13.34294 -12.99402 -12.91228 -12.80634 -12.55769 -12.36099 -12.09316 -11.87874 -11.55255 -11.30773 -11.17486 -10.61595 -10.52588 -9.85476 -9.49941 -8.13883 -6.33373 1.39283 1.41239 1.49765 2.39248 3.05129 3.73644 3.94763 4.07780 4.23212 4.40762 4.54305 4.61340 4.75981 4.87723 4.92654 4.94686 5.02100 5.09346 5.22813 5.40092 5.53152 5.55646 5.62514 5.69758 5.89889 6.13724 6.24164 6.28078 6.70111 6.73177 7.38408 7.54645 8.85130 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.058192 B = 0.010391 C = 0.009613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.047543 B = 2693.935938 C = 2912.076328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.027 3.973 3 Si 0.956 3.044 4 H -0.277 1.277 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.565 4.565 8 H 0.050 0.950 9 C 0.240 3.760 10 O -0.596 6.596 11 C -0.128 4.128 12 C -0.112 4.112 13 C -0.089 4.089 14 C -0.073 4.073 15 H 0.053 0.947 16 C 0.073 3.927 17 N -0.850 5.850 18 C -0.086 4.086 19 H 0.268 0.732 20 H 0.371 0.629 21 H 0.059 0.941 22 H 0.033 0.967 23 H 0.044 0.956 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.024 0.976 28 H 0.072 0.928 29 H 0.343 0.657 30 H 0.349 0.651 31 H 0.060 0.940 32 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.202 -8.837 0.110 9.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.173 4.173 3 Si 0.782 3.218 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.197 1.197 7 C -0.603 4.603 8 H 0.068 0.932 9 C 0.201 3.799 10 O -0.405 6.405 11 C -0.166 4.166 12 C -0.150 4.150 13 C -0.126 4.126 14 C -0.092 4.092 15 H 0.071 0.929 16 C -0.058 4.058 17 N -0.380 5.380 18 C -0.124 4.124 19 H 0.077 0.923 20 H 0.220 0.780 21 H 0.078 0.922 22 H 0.052 0.948 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.090 0.910 29 H 0.156 0.844 30 H 0.163 0.837 31 H 0.078 0.922 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.054 -9.134 0.693 9.388 hybrid contribution 0.600 1.790 -0.764 2.036 sum 2.654 -7.345 -0.071 7.810 Atomic orbital electron populations 1.69722 1.06694 1.27832 1.51036 1.25687 0.95827 1.02178 0.93601 0.85615 0.78680 0.79312 0.78226 1.20297 1.20561 1.19726 1.22138 0.94032 0.93240 1.50907 0.93218 1.18757 0.87521 0.91675 0.81940 1.86068 1.57377 1.52704 1.44318 1.21996 0.99430 0.96865 0.98316 1.21489 0.97961 0.95402 1.00112 1.21338 0.96833 0.97457 0.97000 1.20998 0.96423 0.93133 0.98628 0.92878 1.21737 0.94510 0.89320 1.00229 1.58654 1.29014 1.04978 1.45382 1.21420 0.97054 0.93974 0.99968 0.92273 0.78034 0.92196 0.94821 0.93718 0.92702 0.90851 0.92889 0.95731 0.90963 0.84437 0.83715 0.92154 0.94129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.92 9.72 21.45 0.21 -49.71 16 2 C 0.03 1.43 5.19 84.65 0.44 1.87 16 3 Si 0.96 43.13 29.54 68.60 2.03 45.15 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.57 -31.22 8.22 25.60 0.21 -31.01 16 8 H 0.05 2.74 7.75 -2.91 -0.02 2.72 16 9 C 0.24 12.14 0.67 -11.54 -0.01 12.13 16 10 O -0.60 -31.71 11.61 -148.98 -1.73 -33.44 16 11 C -0.13 -6.14 4.76 30.60 0.15 -6.00 16 12 C -0.11 -4.52 5.78 30.59 0.18 -4.34 16 13 C -0.09 -3.12 5.09 30.59 0.16 -2.97 16 14 C -0.07 -2.63 2.18 -10.78 -0.02 -2.65 16 15 H 0.05 2.11 7.68 -2.39 -0.02 2.09 16 16 C 0.07 2.07 6.18 86.30 0.53 2.60 16 17 N -0.85 -19.99 9.08 -186.71 -1.69 -21.69 16 18 C -0.09 -3.71 4.17 30.61 0.13 -3.58 16 19 H 0.27 13.94 8.31 -92.70 -0.77 13.17 16 20 H 0.37 20.53 6.96 -74.06 -0.52 20.01 16 21 H 0.06 3.20 6.20 -2.39 -0.01 3.19 16 22 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.04 1.90 7.68 -2.39 -0.02 1.88 16 24 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.07 2.37 7.75 -2.39 -0.02 2.35 16 26 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 27 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 29 H 0.34 7.71 8.99 -89.70 -0.81 6.90 16 30 H 0.35 6.38 9.08 -89.69 -0.81 5.57 16 31 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -57.72 250.90 -0.45 -58.16 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: -1.01 Total: 35.46 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: 1.76 Total: -33.94 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -1.49 Total: -71.40 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -1.73 Total: -33.44 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -57.72 -0.45 -58.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259505313.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.741 kcal (2) G-P(sol) polarization free energy of solvation -57.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds