Wall clock time and date at job start Mon Mar 30 2020 01:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99778 * 2 1 4 4 H 1.48495 * 109.47175 * 264.84689 * 3 2 1 5 5 H 1.48503 * 109.46967 * 24.84426 * 3 2 1 6 6 H 1.48500 * 109.46976 * 144.84570 * 3 2 1 7 7 C 1.37879 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99657 * 8.02631 * 7 2 1 9 9 C 1.50696 * 120.00219 * 188.03035 * 7 2 1 10 10 O 1.42901 * 109.47144 * 55.23897 * 9 7 2 11 11 C 1.52996 * 109.47138 * 175.24035 * 9 7 2 12 12 C 1.53001 * 109.47004 * 60.00134 * 11 9 7 13 13 C 1.52999 * 109.47243 * 60.00140 * 12 11 9 14 14 C 1.53006 * 109.46925 * 299.99887 * 13 12 11 15 15 H 1.09004 * 109.46917 * 300.00404 * 14 13 12 16 16 C 1.52999 * 109.46951 * 180.02562 * 14 13 12 17 17 N 1.46890 * 109.47516 * 65.00072 * 16 14 13 18 18 C 1.53001 * 109.47115 * 295.24352 * 9 7 2 19 19 H 0.96998 * 120.00405 * 359.97438 * 1 2 3 20 20 H 0.96706 * 113.99888 * 59.99869 * 10 9 7 21 21 H 1.09002 * 109.47235 * 299.99925 * 11 9 7 22 22 H 1.09000 * 109.47094 * 180.02562 * 11 9 7 23 23 H 1.09004 * 109.46927 * 299.99536 * 12 11 9 24 24 H 1.08999 * 109.46819 * 179.97438 * 12 11 9 25 25 H 1.08996 * 109.46786 * 180.02562 * 13 12 11 26 26 H 1.08991 * 109.47340 * 60.00029 * 13 12 11 27 27 H 1.09003 * 109.46924 * 304.99723 * 16 14 13 28 28 H 1.08999 * 109.46473 * 185.00305 * 16 14 13 29 29 H 1.00895 * 111.00153 * 179.97438 * 17 16 14 30 30 H 1.00908 * 111.00118 * 303.95372 * 17 16 14 31 31 H 1.09000 * 109.47010 * 179.97438 * 18 9 7 32 32 H 1.08999 * 109.47458 * 59.99652 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6055 1.9836 -1.3944 5 1 1.3962 2.6817 0.5883 6 1 3.4879 1.4742 0.8061 7 6 2.0046 -1.1940 -0.0005 8 1 1.4726 -2.1247 -0.1316 9 6 3.5005 -1.2004 0.1818 10 8 3.8362 -0.5140 1.3894 11 6 3.9984 -2.6449 0.2609 12 6 3.6391 -3.3798 -1.0320 13 6 4.3006 -2.6767 -2.2190 14 6 3.8026 -1.2321 -2.2982 15 1 2.7206 -1.2275 -2.4300 16 6 4.4636 -0.5292 -3.4855 17 7 4.0228 -1.1612 -4.7361 18 6 4.1620 -0.4972 -1.0052 19 1 -0.4850 0.8400 0.0004 20 1 3.4500 -0.9057 2.1848 21 1 3.5272 -3.1459 1.1066 22 1 5.0803 -2.6496 0.3932 23 1 2.5571 -3.3752 -1.1639 24 1 3.9942 -4.4088 -0.9758 25 1 4.0442 -3.2000 -3.1401 26 1 5.3825 -2.6814 -2.0872 27 1 5.5471 -0.6113 -3.3991 28 1 4.1782 0.5228 -3.4897 29 1 4.4456 -0.7141 -5.5358 30 1 4.2183 -2.1511 -4.7295 31 1 5.2439 -0.5015 -0.8731 32 1 3.8072 0.5319 -1.0616 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259505317.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:45 Heat of formation + Delta-G solvation = -62.292473 kcal Electronic energy + Delta-G solvation = -13921.680490 eV Core-core repulsion = 11688.485317 eV Total energy + Delta-G solvation = -2233.195173 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.70746 -35.46402 -33.23940 -32.15040 -30.02576 -28.65849 -25.00627 -24.02732 -21.59741 -20.03670 -18.77617 -16.87456 -15.69450 -15.10438 -14.70018 -14.43233 -14.02878 -13.56256 -13.07379 -12.76670 -12.30660 -12.01338 -11.91480 -11.42515 -11.21641 -10.64126 -10.39699 -10.11640 -10.08402 -9.91189 -9.61457 -9.51891 -8.69511 -8.45042 -8.38748 -8.06800 -6.06209 -4.12785 3.41988 3.53136 3.74350 4.57641 4.84859 5.24704 5.31272 5.37820 5.55218 5.79112 5.86819 5.96322 6.15215 6.19834 6.28470 6.35109 6.44180 6.51498 6.57928 6.65753 6.94484 7.01424 7.12248 7.22557 7.44120 7.49973 7.68706 7.76785 8.37375 8.90531 9.10125 9.61110 11.04650 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.030367 B = 0.017302 C = 0.014281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.826813 B = 1617.891433 C = 1960.171152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.085 3.915 3 Si 0.876 3.124 4 H -0.288 1.288 5 H -0.308 1.308 6 H -0.226 1.226 7 C -0.545 4.545 8 H 0.076 0.924 9 C 0.216 3.784 10 O -0.582 6.582 11 C -0.124 4.124 12 C -0.108 4.108 13 C -0.106 4.106 14 C -0.076 4.076 15 H 0.100 0.900 16 C 0.065 3.935 17 N -0.849 5.849 18 C -0.093 4.093 19 H 0.263 0.737 20 H 0.360 0.640 21 H 0.053 0.947 22 H 0.040 0.960 23 H 0.077 0.923 24 H 0.042 0.958 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.018 0.982 28 H 0.066 0.934 29 H 0.333 0.667 30 H 0.338 0.662 31 H 0.039 0.961 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.204 -3.253 -4.249 10.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.119 4.119 3 Si 0.706 3.294 4 H -0.215 1.215 5 H -0.236 1.236 6 H -0.149 1.149 7 C -0.582 4.582 8 H 0.094 0.906 9 C 0.177 3.823 10 O -0.388 6.388 11 C -0.162 4.162 12 C -0.146 4.146 13 C -0.144 4.144 14 C -0.095 4.095 15 H 0.118 0.882 16 C -0.066 4.066 17 N -0.378 5.378 18 C -0.131 4.131 19 H 0.073 0.927 20 H 0.206 0.794 21 H 0.072 0.928 22 H 0.059 0.941 23 H 0.095 0.905 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.036 0.964 28 H 0.085 0.915 29 H 0.144 0.856 30 H 0.151 0.849 31 H 0.057 0.943 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.660 -2.547 -4.445 10.062 hybrid contribution 0.977 0.347 0.121 1.044 sum 9.637 -2.200 -4.324 10.789 Atomic orbital electron populations 1.69959 1.06683 1.27270 1.49082 1.24953 0.94471 0.99616 0.92820 0.87110 0.81840 0.82305 0.78124 1.21538 1.23632 1.14883 1.21387 0.89947 0.94816 1.52031 0.90603 1.19065 0.94218 0.86910 0.82102 1.86539 1.76923 1.58158 1.17179 1.21994 0.98561 0.98372 0.97264 1.21405 1.02110 0.96586 0.94490 1.21506 0.98712 0.96202 0.97936 1.21055 1.02832 0.93442 0.92127 0.88201 1.21898 0.95880 0.98905 0.89898 1.58703 1.67264 1.07746 1.04109 1.21551 0.97870 0.98998 0.94700 0.92728 0.79375 0.92848 0.94094 0.90456 0.93950 0.92905 0.93603 0.96375 0.91505 0.85584 0.84915 0.94267 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.27 13.96 55.43 0.77 -26.49 16 2 C 0.09 2.44 5.45 -17.82 -0.10 2.35 16 3 Si 0.88 22.60 23.87 -169.99 -4.06 18.54 16 4 H -0.29 -7.34 6.89 56.52 0.39 -6.95 16 5 H -0.31 -8.08 7.11 56.52 0.40 -7.68 16 6 H -0.23 -5.72 5.43 56.52 0.31 -5.41 16 7 C -0.54 -14.71 6.94 -34.44 -0.24 -14.95 16 8 H 0.08 2.21 6.78 -52.48 -0.36 1.86 16 9 C 0.22 4.99 0.71 -91.78 -0.07 4.93 16 10 O -0.58 -13.49 9.88 -35.23 -0.35 -13.83 16 11 C -0.12 -2.46 5.04 -26.73 -0.13 -2.60 16 12 C -0.11 -1.98 5.70 -26.73 -0.15 -2.14 16 13 C -0.11 -1.80 4.98 -26.73 -0.13 -1.93 16 14 C -0.08 -1.49 2.18 -90.62 -0.20 -1.69 16 15 H 0.10 2.33 7.22 -51.93 -0.37 1.96 16 16 C 0.06 1.09 6.24 -3.83 -0.02 1.07 16 17 N -0.85 -12.46 9.62 -10.37 -0.10 -12.56 16 18 C -0.09 -2.05 3.92 -26.73 -0.10 -2.15 16 19 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 20 H 0.36 7.36 9.04 45.56 0.41 7.77 16 21 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.08 1.59 6.53 -51.93 -0.34 1.25 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.80 6.68 -51.93 -0.35 0.45 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.33 4.00 9.08 -39.29 -0.36 3.64 16 30 H 0.34 4.45 7.25 -39.29 -0.28 4.16 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 1.25 3.34 -51.93 -0.17 1.08 16 LS Contribution 239.11 15.07 3.60 3.60 Total: -1.00 -30.60 239.11 -5.30 -35.90 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -4.02 Total: 11.97 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -1.15 Total: -17.12 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.67 Total: -39.05 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.35 Total: -13.83 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.06 Total: 18.54 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -30.60 -5.30 -35.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259505317.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.394 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds