Wall clock time and date at job start Mon Mar 30 2020 01:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99778 * 2 1 4 4 H 1.48495 * 109.47175 * 264.84689 * 3 2 1 5 5 H 1.48503 * 109.46967 * 24.84426 * 3 2 1 6 6 H 1.48500 * 109.46976 * 144.84570 * 3 2 1 7 7 C 1.37879 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99657 * 8.02631 * 7 2 1 9 9 C 1.50696 * 120.00219 * 188.03035 * 7 2 1 10 10 O 1.42901 * 109.47144 * 55.23897 * 9 7 2 11 11 C 1.52996 * 109.47138 * 175.24035 * 9 7 2 12 12 C 1.53001 * 109.47004 * 60.00134 * 11 9 7 13 13 C 1.52999 * 109.47243 * 60.00140 * 12 11 9 14 14 C 1.53006 * 109.46925 * 299.99887 * 13 12 11 15 15 H 1.09004 * 109.46917 * 300.00404 * 14 13 12 16 16 C 1.52999 * 109.46951 * 180.02562 * 14 13 12 17 17 N 1.46890 * 109.47516 * 65.00072 * 16 14 13 18 18 C 1.53001 * 109.47115 * 295.24352 * 9 7 2 19 19 H 0.96998 * 120.00405 * 359.97438 * 1 2 3 20 20 H 0.96706 * 113.99888 * 59.99869 * 10 9 7 21 21 H 1.09002 * 109.47235 * 299.99925 * 11 9 7 22 22 H 1.09000 * 109.47094 * 180.02562 * 11 9 7 23 23 H 1.09004 * 109.46927 * 299.99536 * 12 11 9 24 24 H 1.08999 * 109.46819 * 179.97438 * 12 11 9 25 25 H 1.08996 * 109.46786 * 180.02562 * 13 12 11 26 26 H 1.08991 * 109.47340 * 60.00029 * 13 12 11 27 27 H 1.09003 * 109.46924 * 304.99723 * 16 14 13 28 28 H 1.08999 * 109.46473 * 185.00305 * 16 14 13 29 29 H 1.00895 * 111.00153 * 179.97438 * 17 16 14 30 30 H 1.00908 * 111.00118 * 303.95372 * 17 16 14 31 31 H 1.09000 * 109.47010 * 179.97438 * 18 9 7 32 32 H 1.08999 * 109.47458 * 59.99652 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6055 1.9836 -1.3944 5 1 1.3962 2.6817 0.5883 6 1 3.4879 1.4742 0.8061 7 6 2.0046 -1.1940 -0.0005 8 1 1.4726 -2.1247 -0.1316 9 6 3.5005 -1.2004 0.1818 10 8 3.8362 -0.5140 1.3894 11 6 3.9984 -2.6449 0.2609 12 6 3.6391 -3.3798 -1.0320 13 6 4.3006 -2.6767 -2.2190 14 6 3.8026 -1.2321 -2.2982 15 1 2.7206 -1.2275 -2.4300 16 6 4.4636 -0.5292 -3.4855 17 7 4.0228 -1.1612 -4.7361 18 6 4.1620 -0.4972 -1.0052 19 1 -0.4850 0.8400 0.0004 20 1 3.4500 -0.9057 2.1848 21 1 3.5272 -3.1459 1.1066 22 1 5.0803 -2.6496 0.3932 23 1 2.5571 -3.3752 -1.1639 24 1 3.9942 -4.4088 -0.9758 25 1 4.0442 -3.2000 -3.1401 26 1 5.3825 -2.6814 -2.0872 27 1 5.5471 -0.6113 -3.3991 28 1 4.1782 0.5228 -3.4897 29 1 4.4456 -0.7141 -5.5358 30 1 4.2183 -2.1511 -4.7295 31 1 5.2439 -0.5015 -0.8731 32 1 3.8072 0.5319 -1.0616 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259505317.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:44 Heat of formation + Delta-G solvation = -87.535238 kcal Electronic energy + Delta-G solvation = -13922.775098 eV Core-core repulsion = 11688.485317 eV Total energy + Delta-G solvation = -2234.289781 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.35476 -37.06550 -34.70658 -34.31556 -31.56839 -30.32083 -26.96335 -25.52429 -23.16856 -21.60566 -20.58962 -18.74363 -17.13910 -17.05166 -16.35852 -15.89669 -15.70402 -15.31009 -14.55524 -14.49202 -14.13413 -13.64401 -13.47712 -13.31267 -12.82043 -12.34604 -12.22970 -11.96734 -11.69384 -11.60447 -11.28130 -11.16418 -10.74129 -10.43961 -9.93418 -9.53976 -8.29961 -6.36287 1.34556 1.41943 1.66001 2.42579 3.08801 3.50766 3.87793 3.94202 4.06635 4.31491 4.44749 4.47763 4.59705 4.69682 4.78194 4.86580 4.90454 4.94073 5.05412 5.13410 5.41073 5.45876 5.55055 5.65240 5.71619 5.84012 6.20641 6.30145 6.69841 6.72479 7.24093 7.43913 8.84753 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.030367 B = 0.017302 C = 0.014281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.826813 B = 1617.891433 C = 1960.171152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.032 3.968 3 Si 0.933 3.067 4 H -0.287 1.287 5 H -0.317 1.317 6 H -0.214 1.214 7 C -0.527 4.527 8 H 0.042 0.958 9 C 0.210 3.790 10 O -0.588 6.588 11 C -0.120 4.120 12 C -0.108 4.108 13 C -0.100 4.100 14 C -0.074 4.074 15 H 0.052 0.948 16 C 0.071 3.929 17 N -0.858 5.858 18 C -0.097 4.097 19 H 0.261 0.739 20 H 0.370 0.630 21 H 0.050 0.950 22 H 0.065 0.935 23 H 0.042 0.958 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.350 0.650 30 H 0.348 0.652 31 H 0.063 0.937 32 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.990 -3.868 -4.894 13.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.166 4.166 3 Si 0.762 3.238 4 H -0.214 1.214 5 H -0.247 1.247 6 H -0.136 1.136 7 C -0.565 4.565 8 H 0.060 0.940 9 C 0.171 3.829 10 O -0.396 6.396 11 C -0.158 4.158 12 C -0.146 4.146 13 C -0.137 4.137 14 C -0.093 4.093 15 H 0.070 0.930 16 C -0.059 4.059 17 N -0.390 5.390 18 C -0.135 4.135 19 H 0.070 0.930 20 H 0.218 0.782 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.060 0.940 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.164 0.836 30 H 0.163 0.837 31 H 0.081 0.919 32 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 11.471 -3.178 -5.096 12.948 hybrid contribution 0.087 0.446 0.332 0.563 sum 11.558 -2.732 -4.764 12.796 Atomic orbital electron populations 1.70083 1.08274 1.27746 1.52126 1.25650 0.94924 1.02727 0.93317 0.86237 0.80778 0.78717 0.78080 1.21445 1.24691 1.13615 1.21660 0.92434 0.93012 1.49400 0.93986 1.19153 0.91621 0.89552 0.82608 1.86485 1.76748 1.58736 1.17624 1.21929 0.99840 0.95951 0.98098 1.21391 1.00193 0.98549 0.94450 1.21480 0.99923 0.94057 0.98232 1.20948 1.00267 0.95657 0.92427 0.92995 1.21713 0.97005 0.97619 0.89606 1.58589 1.67881 1.08607 1.03968 1.21587 0.99031 0.97784 0.95070 0.92975 0.78184 0.93133 0.91637 0.93963 0.90710 0.90868 0.90944 0.93712 0.93263 0.83648 0.83710 0.91863 0.95112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.64 13.96 21.45 0.30 -59.34 16 2 C 0.03 1.90 5.45 84.66 0.46 2.36 16 3 Si 0.93 47.52 23.87 68.60 1.64 49.16 16 4 H -0.29 -14.39 6.89 99.48 0.68 -13.71 16 5 H -0.32 -16.50 7.11 99.48 0.71 -15.79 16 6 H -0.21 -10.36 5.43 99.48 0.54 -9.82 16 7 C -0.53 -29.00 6.94 25.60 0.18 -28.83 16 8 H 0.04 2.55 6.78 -2.91 -0.02 2.54 16 9 C 0.21 9.40 0.71 -11.54 -0.01 9.40 16 10 O -0.59 -26.13 9.88 -148.98 -1.47 -27.60 16 11 C -0.12 -4.47 5.04 30.59 0.15 -4.32 16 12 C -0.11 -3.71 5.70 30.59 0.17 -3.53 16 13 C -0.10 -3.04 4.98 30.60 0.15 -2.88 16 14 C -0.07 -2.78 2.18 -10.79 -0.02 -2.80 16 15 H 0.05 2.45 7.22 -2.39 -0.02 2.43 16 16 C 0.07 2.22 6.24 86.30 0.54 2.76 16 17 N -0.86 -22.94 9.62 -186.74 -1.80 -24.73 16 18 C -0.10 -4.05 3.92 30.59 0.12 -3.93 16 19 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 20 H 0.37 14.59 9.04 -74.05 -0.67 13.92 16 21 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 22 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 23 H 0.04 1.73 6.53 -2.39 -0.02 1.72 16 24 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.07 1.95 6.68 -2.39 -0.02 1.93 16 26 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.35 7.38 9.08 -89.70 -0.81 6.56 16 30 H 0.35 8.02 7.25 -89.69 -0.65 7.37 16 31 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.03 1.41 3.34 -2.39 -0.01 1.41 16 Total: -1.00 -66.86 239.11 -0.77 -67.63 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: -1.18 Total: 26.66 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 1.75 Total: -31.78 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -1.50 Total: -84.07 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -1.47 Total: -27.60 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.64 Total: 49.16 kcal Total: -66.86 -0.77 -67.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259505317.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.902 kcal (2) G-P(sol) polarization free energy of solvation -66.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds