Wall clock time and date at job start Mon Mar 30 2020 02:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99936 * 2 1 4 4 H 1.48507 * 109.46726 * 240.00062 * 3 2 1 5 5 H 1.48498 * 109.47093 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47049 * 120.00112 * 3 2 1 7 7 C 1.37875 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00305 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99903 * 0.02562 * 7 2 1 10 10 H 1.08991 * 109.46856 * 299.99436 * 9 7 2 11 11 C 1.52995 * 109.47073 * 59.99946 * 9 7 2 12 12 O 1.42897 * 109.47333 * 56.07577 * 11 9 7 13 13 N 1.46909 * 109.47012 * 179.97438 * 9 7 2 14 14 C 1.46846 * 110.99902 * 180.74758 * 13 9 7 15 15 C 1.53034 * 109.52253 * 174.15822 * 14 13 9 16 16 C 1.53119 * 109.27870 * 59.17894 * 15 14 13 17 17 C 1.53126 * 109.15977 * 302.34619 * 16 15 14 18 18 C 1.46837 * 111.00047 * 56.53345 * 13 9 7 19 19 H 0.96993 * 119.99748 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47033 * 296.07508 * 11 9 7 21 21 H 1.08999 * 109.47084 * 176.07825 * 11 9 7 22 22 H 0.96706 * 113.99896 * 179.97438 * 12 11 9 23 23 H 1.09002 * 109.45729 * 294.17237 * 14 13 9 24 24 H 1.09001 * 109.46143 * 54.14312 * 14 13 9 25 25 H 1.09001 * 109.50280 * 299.23752 * 15 14 13 26 26 H 1.09000 * 109.50147 * 179.11919 * 15 14 13 27 27 H 1.08995 * 109.52372 * 182.44474 * 16 15 14 28 28 H 1.09000 * 109.57680 * 62.27684 * 16 15 14 29 29 H 1.09005 * 109.49652 * 297.71222 * 17 16 15 30 30 H 1.09000 * 109.53308 * 177.61710 * 17 16 15 31 31 H 1.09002 * 109.46580 * 305.85367 * 18 13 9 32 32 H 1.09005 * 109.46627 * 65.83736 * 18 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 6 0.3719 -2.5805 -1.2490 12 8 1.1828 -2.4135 -2.4137 13 7 2.2057 -3.6158 0.0005 14 6 1.5057 -4.9066 -0.0174 15 6 2.5247 -6.0389 -0.1637 16 6 3.5095 -5.9874 1.0077 17 6 4.1895 -4.6156 1.0325 18 6 3.1222 -3.5245 1.1441 19 1 -0.4849 0.8400 -0.0004 20 1 -0.3816 -1.7936 -1.2149 21 1 -0.1196 -3.5527 -1.2848 22 1 0.6904 -2.4542 -3.2450 23 1 0.9534 -5.0331 0.9138 24 1 0.8117 -4.9317 -0.8575 25 1 3.0679 -5.9208 -1.1013 26 1 2.0061 -6.9977 -0.1612 27 1 4.2630 -6.7652 0.8847 28 1 2.9727 -6.1447 1.9433 29 1 4.7589 -4.4752 0.1137 30 1 4.8608 -4.5571 1.8893 31 1 3.6023 -2.5460 1.1476 32 1 2.5624 -3.6577 2.0699 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259630202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:27 Heat of formation + Delta-G solvation = -50.983762 kcal Electronic energy + Delta-G solvation = -13629.085296 eV Core-core repulsion = 11396.380505 eV Total energy + Delta-G solvation = -2232.704791 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.30875 -35.55404 -33.24298 -31.79019 -30.21906 -27.63647 -24.86982 -23.25869 -22.03502 -19.83094 -18.93103 -16.43227 -15.82413 -15.59367 -14.26463 -14.03107 -13.78602 -13.26499 -13.13685 -12.81892 -12.18159 -11.88629 -11.59061 -11.37491 -10.89815 -10.74921 -10.64137 -10.48325 -10.21182 -10.05076 -9.82412 -9.35046 -8.82348 -8.63674 -8.25286 -7.04472 -5.96669 -3.97183 3.37300 3.40410 3.45295 4.46954 4.98732 5.34500 5.37026 5.40464 5.46554 5.76111 5.87084 6.05163 6.08794 6.16355 6.31257 6.35394 6.39558 6.49739 6.63721 6.69810 6.83842 6.88490 7.05261 7.33419 7.44243 7.88368 8.11894 8.33804 8.62930 9.02338 9.05406 9.65832 11.11033 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042547 B = 0.011933 C = 0.010256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.933573 B = 2345.963257 C = 2729.436861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.481 4.481 8 H 0.063 0.937 9 C 0.216 3.784 10 H 0.009 0.991 11 C 0.087 3.913 12 O -0.547 6.547 13 N -0.523 5.523 14 C 0.051 3.949 15 C -0.113 4.113 16 C -0.118 4.118 17 C -0.117 4.117 18 C 0.063 3.937 19 H 0.260 0.740 20 H 0.074 0.926 21 H -0.004 1.004 22 H 0.343 0.657 23 H 0.015 0.985 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.670 -8.197 0.247 8.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.519 4.519 8 H 0.081 0.919 9 C 0.110 3.890 10 H 0.026 0.974 11 C 0.009 3.991 12 O -0.347 6.347 13 N -0.248 5.248 14 C -0.077 4.077 15 C -0.151 4.151 16 C -0.155 4.155 17 C -0.155 4.155 18 C -0.065 4.065 19 H 0.070 0.930 20 H 0.092 0.908 21 H 0.014 0.986 22 H 0.184 0.816 23 H 0.033 0.967 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 3.275 -7.968 0.302 8.620 hybrid contribution -0.667 0.778 0.328 1.076 sum 2.608 -7.190 0.629 7.674 Atomic orbital electron populations 1.69839 1.05919 1.26574 1.52102 1.24887 0.94893 0.99151 0.95319 0.86532 0.79416 0.82719 0.78553 1.20199 1.21515 1.20457 1.20943 0.93216 0.89172 1.48605 0.91898 1.19293 0.89612 0.88589 0.91521 0.97372 1.22422 0.94076 0.96030 0.86569 1.86720 1.37253 1.96205 1.14556 1.61928 1.20366 1.01255 1.41262 1.22076 0.95539 0.90826 0.99304 1.21553 0.97410 0.97216 0.98922 1.21552 0.98250 0.97368 0.98354 1.21627 0.97982 0.94595 1.01298 1.21952 0.94156 0.99148 0.91232 0.93042 0.90818 0.98581 0.81600 0.96663 0.91261 0.91462 0.92855 0.92884 0.92911 0.91560 0.92715 0.89669 0.96681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.00 11.36 55.43 0.63 -25.37 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 3 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.48 -13.55 7.40 -34.44 -0.25 -13.80 16 8 H 0.06 1.79 6.45 -52.49 -0.34 1.46 16 9 C 0.22 5.62 1.86 -68.86 -0.13 5.49 16 10 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 11 C 0.09 2.15 6.15 37.15 0.23 2.37 16 12 O -0.55 -13.20 13.10 -35.23 -0.46 -13.67 16 13 N -0.52 -11.86 4.45 -228.08 -1.01 -12.87 16 14 C 0.05 0.99 5.21 -3.84 -0.02 0.97 16 15 C -0.11 -1.81 6.09 -26.65 -0.16 -1.97 16 16 C -0.12 -1.76 6.00 -26.60 -0.16 -1.92 16 17 C -0.12 -1.96 6.09 -26.65 -0.16 -2.12 16 18 C 0.06 1.31 5.22 -3.84 -0.02 1.29 16 19 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 20 H 0.07 1.97 6.18 -51.93 -0.32 1.65 16 21 H 0.00 -0.08 6.06 -51.93 -0.31 -0.40 16 22 H 0.34 6.42 9.12 45.56 0.42 6.84 16 23 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 24 H 0.07 1.35 5.90 -51.93 -0.31 1.05 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.91 6.07 -51.93 -0.32 1.59 16 32 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 250.48 15.07 3.77 3.77 Total: -1.00 -30.29 250.48 -6.99 -37.28 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.12 Total: 2.06 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.77 Total: -8.17 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: -0.39 Total: -38.24 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.46 Total: -13.67 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.29 -6.99 -37.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259630202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.706 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds