Wall clock time and date at job start Mon Mar 30 2020 02:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99936 * 2 1 4 4 H 1.48507 * 109.46726 * 240.00062 * 3 2 1 5 5 H 1.48498 * 109.47093 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47049 * 120.00112 * 3 2 1 7 7 C 1.37875 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00305 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99903 * 0.02562 * 7 2 1 10 10 H 1.08991 * 109.46856 * 299.99436 * 9 7 2 11 11 C 1.52995 * 109.47073 * 59.99946 * 9 7 2 12 12 O 1.42897 * 109.47333 * 56.07577 * 11 9 7 13 13 N 1.46909 * 109.47012 * 179.97438 * 9 7 2 14 14 C 1.46846 * 110.99902 * 180.74758 * 13 9 7 15 15 C 1.53034 * 109.52253 * 174.15822 * 14 13 9 16 16 C 1.53119 * 109.27870 * 59.17894 * 15 14 13 17 17 C 1.53126 * 109.15977 * 302.34619 * 16 15 14 18 18 C 1.46837 * 111.00047 * 56.53345 * 13 9 7 19 19 H 0.96993 * 119.99748 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47033 * 296.07508 * 11 9 7 21 21 H 1.08999 * 109.47084 * 176.07825 * 11 9 7 22 22 H 0.96706 * 113.99896 * 179.97438 * 12 11 9 23 23 H 1.09002 * 109.45729 * 294.17237 * 14 13 9 24 24 H 1.09001 * 109.46143 * 54.14312 * 14 13 9 25 25 H 1.09001 * 109.50280 * 299.23752 * 15 14 13 26 26 H 1.09000 * 109.50147 * 179.11919 * 15 14 13 27 27 H 1.08995 * 109.52372 * 182.44474 * 16 15 14 28 28 H 1.09000 * 109.57680 * 62.27684 * 16 15 14 29 29 H 1.09005 * 109.49652 * 297.71222 * 17 16 15 30 30 H 1.09000 * 109.53308 * 177.61710 * 17 16 15 31 31 H 1.09002 * 109.46580 * 305.85367 * 18 13 9 32 32 H 1.09005 * 109.46627 * 65.83736 * 18 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 6 0.3719 -2.5805 -1.2490 12 8 1.1828 -2.4135 -2.4137 13 7 2.2057 -3.6158 0.0005 14 6 1.5057 -4.9066 -0.0174 15 6 2.5247 -6.0389 -0.1637 16 6 3.5095 -5.9874 1.0077 17 6 4.1895 -4.6156 1.0325 18 6 3.1222 -3.5245 1.1441 19 1 -0.4849 0.8400 -0.0004 20 1 -0.3816 -1.7936 -1.2149 21 1 -0.1196 -3.5527 -1.2848 22 1 0.6904 -2.4542 -3.2450 23 1 0.9534 -5.0331 0.9138 24 1 0.8117 -4.9317 -0.8575 25 1 3.0679 -5.9208 -1.1013 26 1 2.0061 -6.9977 -0.1612 27 1 4.2630 -6.7652 0.8847 28 1 2.9727 -6.1447 1.9433 29 1 4.7589 -4.4752 0.1137 30 1 4.8608 -4.5571 1.8893 31 1 3.6023 -2.5460 1.1476 32 1 2.5624 -3.6577 2.0699 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259630202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:27 Heat of formation + Delta-G solvation = -73.825399 kcal Electronic energy + Delta-G solvation = -13630.075784 eV Core-core repulsion = 11396.380505 eV Total energy + Delta-G solvation = -2233.695278 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.94698 -37.37050 -35.15160 -33.62925 -31.69846 -29.52096 -26.90289 -24.85021 -23.57605 -21.64646 -20.44617 -18.48865 -17.75279 -17.42096 -16.16183 -15.67608 -15.12476 -14.97104 -14.81232 -14.42827 -13.86272 -13.77613 -13.41177 -12.98884 -12.76485 -12.65129 -12.40369 -12.06287 -11.90445 -11.54238 -11.43041 -10.90948 -10.77531 -10.69723 -10.26555 -8.84921 -8.10709 -6.18481 1.40428 1.43682 1.50536 2.43274 3.17537 3.35892 3.92514 4.02715 4.08047 4.16668 4.42258 4.52430 4.56595 4.72869 4.79354 4.92405 4.98169 5.08500 5.13177 5.16436 5.28103 5.30059 5.32030 5.51394 5.57568 5.73904 6.15672 6.42615 6.79543 6.89513 7.31208 7.48764 8.95337 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042547 B = 0.011933 C = 0.010256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.933573 B = 2345.963257 C = 2729.436861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.497 4.497 8 H 0.052 0.948 9 C 0.215 3.785 10 H -0.026 1.026 11 C 0.098 3.902 12 O -0.564 6.564 13 N -0.532 5.532 14 C 0.047 3.953 15 C -0.107 4.107 16 C -0.114 4.114 17 C -0.110 4.110 18 C 0.061 3.939 19 H 0.261 0.739 20 H 0.049 0.951 21 H 0.020 0.980 22 H 0.367 0.633 23 H 0.012 0.988 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.679 -9.350 0.105 10.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.186 4.186 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.535 4.535 8 H 0.070 0.930 9 C 0.108 3.892 10 H -0.009 1.009 11 C 0.020 3.980 12 O -0.367 6.367 13 N -0.258 5.258 14 C -0.081 4.081 15 C -0.145 4.145 16 C -0.151 4.151 17 C -0.148 4.148 18 C -0.067 4.067 19 H 0.070 0.930 20 H 0.067 0.933 21 H 0.038 0.962 22 H 0.212 0.788 23 H 0.030 0.970 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 4.285 -9.140 0.149 10.095 hybrid contribution -1.004 1.107 0.360 1.537 sum 3.281 -8.033 0.509 8.692 Atomic orbital electron populations 1.69962 1.06983 1.27258 1.52451 1.25632 0.95758 1.02233 0.95018 0.85596 0.78328 0.78985 0.78598 1.20214 1.20758 1.19638 1.21150 0.92848 0.90661 1.48870 0.93024 1.19123 0.89804 0.89441 0.90837 1.00898 1.22141 0.93160 0.96321 0.86422 1.86634 1.38191 1.96257 1.15636 1.61917 1.20002 1.01709 1.42123 1.22202 0.96536 0.90471 0.98890 1.21540 0.96849 0.96882 0.99203 1.21557 0.98659 0.96837 0.98083 1.21586 0.96893 0.94213 1.02092 1.21985 0.94728 0.99643 0.90348 0.92999 0.93322 0.96219 0.78838 0.97005 0.91733 0.91926 0.89832 0.89709 0.92394 0.92094 0.90364 0.92332 0.97455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.13 11.36 21.45 0.24 -53.88 16 2 C 0.01 0.64 5.30 84.65 0.45 1.09 16 3 Si 0.96 45.40 29.54 68.60 2.03 47.42 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.50 -28.60 7.40 25.60 0.19 -28.41 16 8 H 0.05 3.02 6.45 -2.91 -0.02 3.00 16 9 C 0.22 11.44 1.86 44.17 0.08 11.52 16 10 H -0.03 -1.54 8.14 -2.39 -0.02 -1.55 16 11 C 0.10 4.86 6.15 71.98 0.44 5.30 16 12 O -0.56 -26.97 13.10 -148.98 -1.95 -28.92 16 13 N -0.53 -24.19 4.45 -875.52 -3.90 -28.09 16 14 C 0.05 1.77 5.21 86.32 0.45 2.22 16 15 C -0.11 -3.11 6.09 30.65 0.19 -2.92 16 16 C -0.11 -3.01 6.00 30.68 0.18 -2.83 16 17 C -0.11 -3.45 6.09 30.65 0.19 -3.26 16 18 C 0.06 2.54 5.22 86.33 0.45 2.99 16 19 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 20 H 0.05 2.66 6.18 -2.39 -0.01 2.64 16 21 H 0.02 0.88 6.06 -2.39 -0.01 0.87 16 22 H 0.37 13.36 9.12 -74.05 -0.68 12.68 16 23 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 24 H 0.06 2.45 5.90 -2.39 -0.01 2.44 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.06 2.69 6.07 -2.39 -0.01 2.68 16 32 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 Total: -1.00 -65.16 250.48 -0.53 -65.70 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.42 Total: 12.07 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 2.62 Total: -14.29 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -3.65 Total: -81.97 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -1.95 Total: -28.92 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -65.16 -0.53 -65.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259630202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.128 kcal (2) G-P(sol) polarization free energy of solvation -65.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds