Wall clock time and date at job start Mon Mar 30 2020 01:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99786 * 2 1 4 4 H 1.48499 * 109.47133 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46793 * 119.99783 * 3 2 1 6 6 H 1.48497 * 109.47014 * 239.99975 * 3 2 1 7 7 C 1.37877 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99967 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99860 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47356 * 59.99993 * 9 7 2 11 11 N 1.46908 * 109.47325 * 299.99887 * 9 7 2 12 12 C 1.53004 * 109.46901 * 180.02562 * 9 7 2 13 13 H 1.09000 * 109.47113 * 54.60905 * 12 9 7 14 14 O 1.42904 * 109.47068 * 174.60150 * 12 9 7 15 15 C 1.52997 * 109.47272 * 294.60252 * 12 9 7 16 16 C 1.54265 * 110.03290 * 299.20717 * 15 12 9 17 17 C 1.54967 * 104.16065 * 217.13534 * 16 15 12 18 18 C 1.54892 * 102.77830 * 37.88510 * 17 16 15 19 19 C 1.53870 * 110.03353 * 181.98658 * 15 12 9 20 20 H 0.97000 * 119.99844 * 179.97438 * 1 2 3 21 21 H 1.00900 * 110.99817 * 174.31211 * 11 9 7 22 22 H 1.00895 * 110.99987 * 298.26800 * 11 9 7 23 23 H 0.96707 * 113.99891 * 60.00406 * 14 12 9 24 24 H 1.09000 * 110.01378 * 60.59248 * 15 12 9 25 25 H 1.09006 * 110.48519 * 335.77938 * 16 15 12 26 26 H 1.08999 * 110.49077 * 98.42450 * 16 15 12 27 27 H 1.09004 * 110.71765 * 279.57420 * 17 16 15 28 28 H 1.08992 * 110.92194 * 156.29552 * 17 16 15 29 29 H 1.08996 * 110.48982 * 203.41078 * 18 17 16 30 30 H 1.09002 * 110.59893 * 80.81914 * 18 17 16 31 31 H 1.09005 * 110.03233 * 238.56931 * 19 15 12 32 32 H 1.08998 * 110.03693 * 359.95402 * 19 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 7 0.4060 -2.5778 1.1974 12 6 2.2454 -3.6620 -0.0015 13 1 2.9332 -3.5518 0.8369 14 8 1.5354 -4.8958 0.1242 15 6 3.0343 -3.6588 -1.3123 16 6 2.0744 -3.8343 -2.5072 17 6 2.8634 -4.7254 -3.4996 18 6 3.5996 -5.7140 -2.5616 19 6 4.0039 -4.8531 -1.3470 20 1 -0.4850 -0.8401 -0.0004 21 1 -0.1784 -3.4000 1.1746 22 1 0.9660 -2.5553 2.0365 23 1 0.9038 -5.0606 -0.5894 24 1 3.5880 -2.7253 -1.4123 25 1 1.1589 -4.3342 -2.1908 26 1 1.8465 -2.8687 -2.9586 27 1 3.5766 -4.1299 -4.0695 28 1 2.1864 -5.2580 -4.1674 29 1 4.4840 -6.1195 -3.0530 30 1 2.9326 -6.5192 -2.2534 31 1 5.0282 -4.4992 -1.4645 32 1 3.9131 -5.4346 -0.4295 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259802365.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:03 Heat of formation + Delta-G solvation = -78.307608 kcal Electronic energy + Delta-G solvation = -13592.858967 eV Core-core repulsion = 11358.969325 eV Total energy + Delta-G solvation = -2233.889641 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.90704 -35.68105 -33.83658 -30.90996 -29.41334 -28.37172 -25.66514 -23.57267 -21.16918 -20.02492 -19.05729 -16.82965 -16.08630 -15.64201 -14.78462 -14.37185 -13.83150 -13.53665 -13.09261 -12.90706 -12.55383 -11.59377 -11.42637 -10.97230 -10.86547 -10.76183 -10.71225 -10.58172 -10.32551 -10.10835 -10.05581 -9.65957 -9.36560 -8.54648 -8.27454 -7.20486 -6.12634 -3.96076 3.48048 3.49976 3.68241 4.61554 4.94145 4.99220 5.09799 5.12518 5.51643 5.72519 5.76612 5.82288 5.93363 6.03193 6.09705 6.14164 6.20429 6.30475 6.43437 6.48488 6.58880 6.62415 6.77849 6.96534 7.32307 7.94131 8.21471 8.43129 8.74629 8.87493 9.11080 9.88595 11.26358 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.040246 B = 0.011367 C = 0.010051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.560001 B = 2462.604876 C = 2785.018715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.037 3.963 3 Si 1.061 2.939 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.611 4.611 8 H 0.045 0.955 9 C 0.182 3.818 10 H 0.030 0.970 11 N -0.829 5.829 12 C 0.084 3.916 13 H 0.083 0.917 14 O -0.576 6.576 15 C -0.109 4.109 16 C -0.112 4.112 17 C -0.125 4.125 18 C -0.121 4.121 19 C -0.119 4.119 20 H 0.289 0.711 21 H 0.302 0.698 22 H 0.323 0.677 23 H 0.361 0.639 24 H 0.086 0.914 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.167 -8.558 -4.451 10.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.173 4.173 3 Si 0.890 3.110 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.650 4.650 8 H 0.063 0.937 9 C 0.073 3.927 10 H 0.048 0.952 11 N -0.356 5.356 12 C 0.023 3.977 13 H 0.101 0.899 14 O -0.382 6.382 15 C -0.128 4.128 16 C -0.149 4.149 17 C -0.163 4.163 18 C -0.158 4.158 19 C -0.157 4.157 20 H 0.102 0.898 21 H 0.113 0.887 22 H 0.134 0.866 23 H 0.208 0.792 24 H 0.105 0.895 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.987 -6.261 -4.161 9.021 hybrid contribution 0.549 -2.438 -0.251 2.512 sum 5.536 -8.699 -4.412 11.215 Atomic orbital electron populations 1.70548 1.06865 1.32718 1.42505 1.25555 0.96633 1.01812 0.93273 0.83696 0.74973 0.76093 0.76238 1.20982 1.21728 1.21757 1.21645 0.93145 0.91167 1.59068 0.93707 1.19796 0.90001 0.92993 0.89917 0.95179 1.59443 1.27241 1.43649 1.05259 1.22936 0.94365 0.84387 0.95968 0.89911 1.86474 1.58162 1.41661 1.51867 1.22276 0.96421 0.98498 0.95619 1.22300 0.97554 0.99596 0.95483 1.22526 0.98867 0.97482 0.97424 1.22319 0.99400 0.97835 0.96285 1.22182 0.98503 0.96852 0.98181 0.89848 0.88716 0.86585 0.79158 0.89538 0.92617 0.91151 0.91879 0.92293 0.92646 0.92038 0.92867 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.51 55.43 0.75 -26.28 16 2 C 0.04 1.05 5.39 -17.82 -0.10 0.96 16 3 Si 1.06 25.24 29.90 -169.99 -5.08 20.16 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.61 -16.60 8.05 -34.44 -0.28 -16.88 16 8 H 0.04 1.21 7.10 -52.49 -0.37 0.84 16 9 C 0.18 4.35 1.91 -68.86 -0.13 4.22 16 10 H 0.03 0.78 6.85 -51.93 -0.36 0.42 16 11 N -0.83 -19.47 7.73 -5.65 -0.04 -19.51 16 12 C 0.08 1.69 2.29 -26.73 -0.06 1.63 16 13 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 14 O -0.58 -10.62 11.99 -35.23 -0.42 -11.04 16 15 C -0.11 -1.98 2.63 -89.51 -0.24 -2.21 16 16 C -0.11 -1.87 5.08 -25.03 -0.13 -2.00 16 17 C -0.13 -1.73 6.91 -24.69 -0.17 -1.90 16 18 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 19 C -0.12 -1.86 6.20 -25.61 -0.16 -2.02 16 20 H 0.29 8.78 6.39 -40.82 -0.26 8.52 16 21 H 0.30 6.40 8.51 -39.29 -0.33 6.06 16 22 H 0.32 7.51 8.99 -39.29 -0.35 7.16 16 23 H 0.36 5.87 7.02 45.56 0.32 6.19 16 24 H 0.09 1.76 7.04 -51.93 -0.37 1.39 16 25 H 0.06 0.90 5.85 -51.93 -0.30 0.60 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.05 7.35 -51.93 -0.38 0.67 16 LS Contribution 251.83 15.07 3.80 3.80 Total: -1.00 -29.42 251.83 -6.60 -36.02 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -4.16 Total: 16.87 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -1.43 Total: -20.01 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.70 Total: -45.80 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -0.42 Total: -11.04 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.08 Total: 20.16 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.42 -6.60 -36.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259802365.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.286 kcal (2) G-P(sol) polarization free energy of solvation -29.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds