Wall clock time and date at job start Mon Mar 30 2020 01:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99786 * 2 1 4 4 H 1.48499 * 109.47133 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46793 * 119.99783 * 3 2 1 6 6 H 1.48497 * 109.47014 * 239.99975 * 3 2 1 7 7 C 1.37877 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99967 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99860 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47356 * 59.99993 * 9 7 2 11 11 N 1.46908 * 109.47325 * 299.99887 * 9 7 2 12 12 C 1.53004 * 109.46901 * 180.02562 * 9 7 2 13 13 H 1.09000 * 109.47113 * 54.60905 * 12 9 7 14 14 O 1.42904 * 109.47068 * 174.60150 * 12 9 7 15 15 C 1.52997 * 109.47272 * 294.60252 * 12 9 7 16 16 C 1.54265 * 110.03290 * 299.20717 * 15 12 9 17 17 C 1.54967 * 104.16065 * 217.13534 * 16 15 12 18 18 C 1.54892 * 102.77830 * 37.88510 * 17 16 15 19 19 C 1.53870 * 110.03353 * 181.98658 * 15 12 9 20 20 H 0.97000 * 119.99844 * 179.97438 * 1 2 3 21 21 H 1.00900 * 110.99817 * 174.31211 * 11 9 7 22 22 H 1.00895 * 110.99987 * 298.26800 * 11 9 7 23 23 H 0.96707 * 113.99891 * 60.00406 * 14 12 9 24 24 H 1.09000 * 110.01378 * 60.59248 * 15 12 9 25 25 H 1.09006 * 110.48519 * 335.77938 * 16 15 12 26 26 H 1.08999 * 110.49077 * 98.42450 * 16 15 12 27 27 H 1.09004 * 110.71765 * 279.57420 * 17 16 15 28 28 H 1.08992 * 110.92194 * 156.29552 * 17 16 15 29 29 H 1.08996 * 110.48982 * 203.41078 * 18 17 16 30 30 H 1.09002 * 110.59893 * 80.81914 * 18 17 16 31 31 H 1.09005 * 110.03233 * 238.56931 * 19 15 12 32 32 H 1.08998 * 110.03693 * 359.95402 * 19 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 7 0.4060 -2.5778 1.1974 12 6 2.2454 -3.6620 -0.0015 13 1 2.9332 -3.5518 0.8369 14 8 1.5354 -4.8958 0.1242 15 6 3.0343 -3.6588 -1.3123 16 6 2.0744 -3.8343 -2.5072 17 6 2.8634 -4.7254 -3.4996 18 6 3.5996 -5.7140 -2.5616 19 6 4.0039 -4.8531 -1.3470 20 1 -0.4850 -0.8401 -0.0004 21 1 -0.1784 -3.4000 1.1746 22 1 0.9660 -2.5553 2.0365 23 1 0.9038 -5.0606 -0.5894 24 1 3.5880 -2.7253 -1.4123 25 1 1.1589 -4.3342 -2.1908 26 1 1.8465 -2.8687 -2.9586 27 1 3.5766 -4.1299 -4.0695 28 1 2.1864 -5.2580 -4.1674 29 1 4.4840 -6.1195 -3.0530 30 1 2.9326 -6.5192 -2.2534 31 1 5.0282 -4.4992 -1.4645 32 1 3.9131 -5.4346 -0.4295 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259802365.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:03 Heat of formation + Delta-G solvation = -100.014183 kcal Electronic energy + Delta-G solvation = -13593.800234 eV Core-core repulsion = 11358.969325 eV Total energy + Delta-G solvation = -2234.830909 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.40394 -37.17576 -35.70569 -32.94259 -30.90636 -29.62965 -27.51868 -25.39292 -22.86909 -21.33741 -20.53476 -18.84905 -17.56672 -17.18159 -16.52917 -15.84106 -15.59055 -15.28450 -14.60187 -14.44613 -14.09873 -13.59365 -13.02225 -12.69660 -12.52548 -12.27392 -11.95732 -11.94302 -11.86914 -11.57114 -11.41456 -11.30724 -11.00797 -10.60536 -10.43197 -9.09907 -8.32678 -6.19924 1.54999 1.62378 1.80664 2.63951 3.33965 3.50365 3.69559 3.78561 3.84888 4.24324 4.38416 4.50359 4.54938 4.56199 4.70935 4.80304 4.90559 4.95679 5.07435 5.11125 5.23501 5.32473 5.44558 5.49272 5.55933 5.94823 6.22566 6.64986 6.80555 6.87118 7.09681 7.71759 9.01649 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.040246 B = 0.011367 C = 0.010051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.560001 B = 2462.604876 C = 2785.018715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 1.105 2.895 4 H -0.289 1.289 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.615 4.615 8 H 0.040 0.960 9 C 0.184 3.816 10 H 0.011 0.989 11 N -0.839 5.839 12 C 0.100 3.900 13 H 0.068 0.932 14 O -0.571 6.571 15 C -0.109 4.109 16 C -0.113 4.113 17 C -0.118 4.118 18 C -0.114 4.114 19 C -0.115 4.115 20 H 0.277 0.723 21 H 0.317 0.683 22 H 0.323 0.677 23 H 0.373 0.627 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.250 -9.624 -5.129 12.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.217 4.217 3 Si 0.929 3.071 4 H -0.215 1.215 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.654 4.654 8 H 0.058 0.942 9 C 0.075 3.925 10 H 0.029 0.971 11 N -0.367 5.367 12 C 0.039 3.961 13 H 0.086 0.914 14 O -0.378 6.378 15 C -0.128 4.128 16 C -0.151 4.151 17 C -0.155 4.155 18 C -0.151 4.151 19 C -0.152 4.152 20 H 0.088 0.912 21 H 0.128 0.872 22 H 0.135 0.865 23 H 0.222 0.778 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.077 -7.356 -4.847 10.702 hybrid contribution 0.190 -2.161 -0.023 2.170 sum 6.267 -9.517 -4.870 12.393 Atomic orbital electron populations 1.70671 1.07824 1.32011 1.45378 1.26872 0.96726 1.05468 0.92655 0.83097 0.74177 0.72418 0.77404 1.21496 1.20301 1.19924 1.21991 0.93192 0.92662 1.57544 0.94161 1.19654 0.90265 0.93416 0.89197 0.97150 1.59251 1.27605 1.44813 1.05027 1.22509 0.93329 0.83612 0.96624 0.91439 1.86449 1.58431 1.40287 1.52625 1.22204 0.96922 0.98683 0.95040 1.22279 0.97893 0.99179 0.95718 1.22498 0.98900 0.97071 0.97032 1.22298 1.00415 0.97358 0.95023 1.22127 0.98130 0.95823 0.99167 0.91173 0.87156 0.86518 0.77779 0.92224 0.92241 0.93694 0.91475 0.90241 0.90364 0.91332 0.92043 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.72 13.51 21.45 0.29 -56.43 16 2 C -0.01 -0.79 5.39 84.65 0.46 -0.33 16 3 Si 1.11 50.85 29.90 68.60 2.05 52.90 16 4 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.62 -33.73 8.05 25.60 0.21 -33.52 16 8 H 0.04 2.20 7.10 -2.91 -0.02 2.18 16 9 C 0.18 8.88 1.91 44.17 0.08 8.97 16 10 H 0.01 0.56 6.85 -2.39 -0.02 0.54 16 11 N -0.84 -39.61 7.73 -171.79 -1.33 -40.94 16 12 C 0.10 4.01 2.29 30.59 0.07 4.08 16 13 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 14 O -0.57 -20.26 11.99 -148.98 -1.79 -22.04 16 15 C -0.11 -3.90 2.63 -10.07 -0.03 -3.92 16 16 C -0.11 -3.69 5.08 31.70 0.16 -3.53 16 17 C -0.12 -2.93 6.91 31.91 0.22 -2.71 16 18 C -0.11 -2.67 6.83 31.67 0.22 -2.46 16 19 C -0.11 -3.34 6.20 31.32 0.19 -3.14 16 20 H 0.28 17.19 6.39 -92.71 -0.59 16.60 16 21 H 0.32 13.32 8.51 -89.69 -0.76 12.55 16 22 H 0.32 15.10 8.99 -89.70 -0.81 14.29 16 23 H 0.37 11.49 7.02 -74.05 -0.52 10.97 16 24 H 0.06 2.44 7.04 -2.39 -0.02 2.42 16 25 H 0.06 1.86 5.85 -2.38 -0.01 1.85 16 26 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.06 1.78 7.35 -2.39 -0.02 1.76 16 Total: -1.00 -62.56 251.83 0.03 -62.54 By element: Atomic # 1 Polarization: 41.33 SS G_CDS: -0.78 Total: 40.54 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 1.58 Total: -36.57 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -1.04 Total: -97.37 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -1.79 Total: -22.04 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 2.05 Total: 52.90 kcal Total: -62.56 0.03 -62.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259802365.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.476 kcal (2) G-P(sol) polarization free energy of solvation -62.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds