Wall clock time and date at job start Mon Mar 30 2020 01:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 11 11 N 1.46898 * 109.47058 * 60.00265 * 9 7 2 12 12 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 13 13 H 1.09005 * 109.47154 * 64.99569 * 12 9 7 14 14 O 1.42908 * 109.47041 * 304.99990 * 12 9 7 15 15 C 1.52993 * 109.47345 * 185.00031 * 12 9 7 16 16 C 1.54273 * 110.03009 * 297.90839 * 15 12 9 17 17 C 1.54964 * 104.15722 * 217.13708 * 16 15 12 18 18 C 1.54892 * 102.77912 * 37.88392 * 17 16 15 19 19 C 1.53873 * 110.03541 * 180.69210 * 15 12 9 20 20 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 21 21 H 1.00892 * 111.00332 * 60.00049 * 11 9 7 22 22 H 1.00905 * 110.99665 * 183.95824 * 11 9 7 23 23 H 0.96697 * 113.99695 * 299.99936 * 14 12 9 24 24 H 1.08999 * 110.02109 * 59.29549 * 15 12 9 25 25 H 1.08996 * 110.48488 * 335.78103 * 16 15 12 26 26 H 1.08994 * 110.48521 * 98.43151 * 16 15 12 27 27 H 1.09000 * 110.71854 * 279.57204 * 17 16 15 28 28 H 1.09001 * 110.76892 * 156.22084 * 17 16 15 29 29 H 1.08999 * 110.48745 * 203.40152 * 18 17 16 30 30 H 1.08999 * 110.59676 * 80.82135 * 18 17 16 31 31 H 1.09004 * 110.03075 * 238.57369 * 19 15 12 32 32 H 1.09003 * 110.02710 * 359.94839 * 19 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4071 -2.5772 -1.1992 12 6 2.2454 -3.6620 0.0018 13 1 2.8109 -3.6555 0.9336 14 8 3.1432 -3.5224 -1.1012 15 6 1.4848 -4.9835 -0.1239 16 6 0.5493 -5.1722 1.0883 17 6 0.6155 -6.6917 1.3852 18 6 2.1031 -7.0290 1.1161 19 6 2.4720 -6.1637 -0.1065 20 1 -0.4850 -0.8401 -0.0004 21 1 0.9653 -2.5260 -2.0381 22 1 -0.1569 -3.4139 -1.1907 23 1 2.7079 -3.5201 -1.9647 24 1 0.9059 -4.9945 -1.0474 25 1 0.9120 -4.6007 1.9426 26 1 -0.4685 -4.8763 0.8344 27 1 -0.0347 -7.2456 0.7080 28 1 0.3553 -6.8942 2.4242 29 1 2.2182 -8.0875 0.8831 30 1 2.7187 -6.7591 1.9741 31 1 2.3717 -6.7478 -1.0214 32 1 3.4931 -5.7948 -0.0094 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259802366.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:05 Heat of formation + Delta-G solvation = -75.518401 kcal Electronic energy + Delta-G solvation = -13508.604975 eV Core-core repulsion = 11274.836282 eV Total energy + Delta-G solvation = -2233.768692 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.90780 -35.99588 -33.63236 -31.14030 -28.99181 -28.41152 -26.26815 -23.54909 -20.92194 -20.25261 -19.25813 -16.80766 -15.92849 -15.49260 -15.09988 -14.73105 -13.80906 -13.51011 -13.35268 -13.12566 -12.03772 -11.72209 -11.40372 -11.05837 -10.95511 -10.83872 -10.78173 -10.63553 -10.46496 -10.33511 -10.00975 -9.89064 -9.21051 -8.46001 -8.22093 -7.29143 -6.08672 -3.89116 3.53008 3.55016 3.73512 4.65660 4.75440 4.84118 4.94433 5.28208 5.45778 5.54630 5.63324 5.75103 5.80038 5.83090 5.93113 6.04204 6.05424 6.12539 6.26123 6.38845 6.44460 6.48497 6.64901 6.74848 7.20986 8.07916 8.32929 8.41999 8.77339 8.81237 9.16228 9.93770 11.31387 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.057531 B = 0.009543 C = 0.009021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.574684 B = 2933.516085 C = 3103.155744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.034 3.966 3 Si 1.063 2.937 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.604 4.604 8 H 0.050 0.950 9 C 0.180 3.820 10 H 0.034 0.966 11 N -0.831 5.831 12 C 0.088 3.912 13 H 0.084 0.916 14 O -0.555 6.555 15 C -0.127 4.127 16 C -0.114 4.114 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.115 4.115 20 H 0.288 0.712 21 H 0.321 0.679 22 H 0.299 0.701 23 H 0.357 0.643 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.850 -11.762 0.362 11.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.175 4.175 3 Si 0.893 3.107 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.643 4.643 8 H 0.068 0.932 9 C 0.072 3.928 10 H 0.052 0.948 11 N -0.362 5.362 12 C 0.027 3.973 13 H 0.102 0.898 14 O -0.358 6.358 15 C -0.146 4.146 16 C -0.151 4.151 17 C -0.162 4.162 18 C -0.162 4.162 19 C -0.153 4.153 20 H 0.100 0.900 21 H 0.133 0.867 22 H 0.110 0.890 23 H 0.203 0.797 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.749 -9.422 1.122 9.649 hybrid contribution 0.322 -2.604 -0.696 2.714 sum 2.070 -12.026 0.426 12.210 Atomic orbital electron populations 1.70564 1.06847 1.32568 1.43155 1.25599 0.96638 1.01913 0.93388 0.83653 0.74863 0.75909 0.76264 1.21115 1.21830 1.21763 1.21724 0.93707 0.90862 1.58011 0.93219 1.19800 0.89738 0.93454 0.89852 0.94804 1.59404 1.28963 1.42371 1.05432 1.22838 0.92290 0.92876 0.89304 0.89808 1.86524 1.36648 1.96379 1.16276 1.22548 0.96719 0.96699 0.98616 1.22337 0.99372 0.95350 0.98074 1.22518 0.96389 0.96646 1.00685 1.22362 0.96444 0.98950 0.98446 1.22127 0.99996 0.95844 0.97333 0.89992 0.86659 0.88952 0.79705 0.91731 0.91283 0.91672 0.91948 0.91973 0.92346 0.91889 0.92739 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.51 55.43 0.75 -26.69 16 2 C 0.03 0.98 5.39 -17.82 -0.10 0.88 16 3 Si 1.06 26.00 29.90 -169.99 -5.08 20.91 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.60 -17.06 8.33 -34.44 -0.29 -17.35 16 8 H 0.05 1.46 7.55 -52.49 -0.40 1.06 16 9 C 0.18 4.33 1.93 -68.86 -0.13 4.19 16 10 H 0.03 0.89 7.26 -51.93 -0.38 0.51 16 11 N -0.83 -18.41 7.58 -5.65 -0.04 -18.45 16 12 C 0.09 1.78 2.06 -26.73 -0.06 1.72 16 13 H 0.08 1.82 8.13 -51.93 -0.42 1.39 16 14 O -0.55 -11.42 12.14 -35.23 -0.43 -11.85 16 15 C -0.13 -2.05 2.24 -89.50 -0.20 -2.25 16 16 C -0.11 -1.75 5.40 -25.03 -0.14 -1.88 16 17 C -0.12 -1.58 6.91 -24.70 -0.17 -1.75 16 18 C -0.12 -1.57 6.83 -25.08 -0.17 -1.74 16 19 C -0.12 -1.67 6.23 -25.62 -0.16 -1.83 16 20 H 0.29 8.76 6.39 -40.82 -0.26 8.50 16 21 H 0.32 6.84 7.67 -39.30 -0.30 6.54 16 22 H 0.30 5.77 7.28 -39.29 -0.29 5.48 16 23 H 0.36 6.45 7.71 45.56 0.35 6.80 16 24 H 0.06 1.03 6.70 -51.93 -0.35 0.68 16 25 H 0.07 1.15 7.71 -51.93 -0.40 0.74 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.08 7.44 -51.93 -0.39 0.70 16 LS Contribution 252.46 15.07 3.80 3.80 Total: -1.00 -30.76 252.46 -6.57 -37.32 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -4.16 Total: 14.95 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -1.41 Total: -20.00 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.71 Total: -45.14 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.43 Total: -11.85 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -5.08 Total: 20.91 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.76 -6.57 -37.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259802366.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.194 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds