Wall clock time and date at job start Mon Mar 30 2020 01:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 11 11 N 1.46898 * 109.47058 * 60.00265 * 9 7 2 12 12 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 13 13 H 1.09005 * 109.47154 * 64.99569 * 12 9 7 14 14 O 1.42908 * 109.47041 * 304.99990 * 12 9 7 15 15 C 1.52993 * 109.47345 * 185.00031 * 12 9 7 16 16 C 1.54273 * 110.03009 * 297.90839 * 15 12 9 17 17 C 1.54964 * 104.15722 * 217.13708 * 16 15 12 18 18 C 1.54892 * 102.77912 * 37.88392 * 17 16 15 19 19 C 1.53873 * 110.03541 * 180.69210 * 15 12 9 20 20 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 21 21 H 1.00892 * 111.00332 * 60.00049 * 11 9 7 22 22 H 1.00905 * 110.99665 * 183.95824 * 11 9 7 23 23 H 0.96697 * 113.99695 * 299.99936 * 14 12 9 24 24 H 1.08999 * 110.02109 * 59.29549 * 15 12 9 25 25 H 1.08996 * 110.48488 * 335.78103 * 16 15 12 26 26 H 1.08994 * 110.48521 * 98.43151 * 16 15 12 27 27 H 1.09000 * 110.71854 * 279.57204 * 17 16 15 28 28 H 1.09001 * 110.76892 * 156.22084 * 17 16 15 29 29 H 1.08999 * 110.48745 * 203.40152 * 18 17 16 30 30 H 1.08999 * 110.59676 * 80.82135 * 18 17 16 31 31 H 1.09004 * 110.03075 * 238.57369 * 19 15 12 32 32 H 1.09003 * 110.02710 * 359.94839 * 19 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4071 -2.5772 -1.1992 12 6 2.2454 -3.6620 0.0018 13 1 2.8109 -3.6555 0.9336 14 8 3.1432 -3.5224 -1.1012 15 6 1.4848 -4.9835 -0.1239 16 6 0.5493 -5.1722 1.0883 17 6 0.6155 -6.6917 1.3852 18 6 2.1031 -7.0290 1.1161 19 6 2.4720 -6.1637 -0.1065 20 1 -0.4850 -0.8401 -0.0004 21 1 0.9653 -2.5260 -2.0381 22 1 -0.1569 -3.4139 -1.1907 23 1 2.7079 -3.5201 -1.9647 24 1 0.9059 -4.9945 -1.0474 25 1 0.9120 -4.6007 1.9426 26 1 -0.4685 -4.8763 0.8344 27 1 -0.0347 -7.2456 0.7080 28 1 0.3553 -6.8942 2.4242 29 1 2.2182 -8.0875 0.8831 30 1 2.7187 -6.7591 1.9741 31 1 2.3717 -6.7478 -1.0214 32 1 3.4931 -5.7948 -0.0094 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259802366.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:05 Heat of formation + Delta-G solvation = -98.404426 kcal Electronic energy + Delta-G solvation = -13509.597387 eV Core-core repulsion = 11274.836282 eV Total energy + Delta-G solvation = -2234.761105 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.36859 -37.45414 -35.57014 -33.12917 -30.39999 -29.56733 -28.16657 -25.41310 -22.57434 -21.44893 -20.69379 -18.84026 -17.36761 -17.11874 -16.69346 -16.29231 -15.59007 -15.19974 -14.90555 -14.27502 -13.85660 -13.55010 -12.98886 -12.73935 -12.54991 -12.41672 -12.00036 -11.94344 -11.92563 -11.74378 -11.51217 -11.38296 -10.93496 -10.51445 -10.39758 -9.13667 -8.33828 -6.18776 1.54554 1.61919 1.81334 2.63867 3.31814 3.47615 3.68683 3.69160 3.87698 4.13712 4.32425 4.46388 4.50942 4.51106 4.65328 4.74841 4.84287 4.88177 5.01584 5.05670 5.19896 5.20956 5.36774 5.43153 5.47842 6.02041 6.28213 6.69237 6.81850 6.86893 7.10033 7.71095 9.02013 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.057531 B = 0.009543 C = 0.009021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.574684 B = 2933.516085 C = 3103.155744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 1.107 2.893 4 H -0.286 1.286 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.616 4.616 8 H 0.033 0.967 9 C 0.185 3.815 10 H 0.008 0.992 11 N -0.837 5.837 12 C 0.099 3.901 13 H 0.063 0.937 14 O -0.566 6.566 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.116 4.116 18 C -0.121 4.121 19 C -0.112 4.112 20 H 0.278 0.722 21 H 0.327 0.673 22 H 0.318 0.682 23 H 0.369 0.631 24 H 0.072 0.928 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.093 -13.066 -0.050 13.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.218 4.218 3 Si 0.932 3.068 4 H -0.211 1.211 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.655 4.655 8 H 0.051 0.949 9 C 0.075 3.925 10 H 0.026 0.974 11 N -0.369 5.369 12 C 0.038 3.962 13 H 0.081 0.919 14 O -0.371 6.371 15 C -0.136 4.136 16 C -0.155 4.155 17 C -0.153 4.153 18 C -0.159 4.159 19 C -0.150 4.150 20 H 0.089 0.911 21 H 0.140 0.860 22 H 0.132 0.868 23 H 0.216 0.784 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.994 -10.752 0.704 10.958 hybrid contribution 0.260 -2.225 -0.572 2.312 sum 2.254 -12.977 0.132 13.172 Atomic orbital electron populations 1.70681 1.07614 1.32031 1.45527 1.26882 0.96786 1.05411 0.92721 0.83057 0.74100 0.72453 0.77219 1.21143 1.20436 1.20426 1.22047 0.93194 0.92989 1.57244 0.94878 1.19545 0.89986 0.93437 0.89488 0.97410 1.59090 1.29042 1.43873 1.04859 1.22558 0.91229 0.93827 0.88598 0.91890 1.86487 1.37144 1.96518 1.16955 1.22423 0.96891 0.95012 0.99311 1.22344 0.98665 0.97610 0.96928 1.22495 0.96783 0.94119 1.01950 1.22366 0.96178 0.99965 0.97368 1.22094 0.98331 0.95378 0.99191 0.91071 0.85984 0.86815 0.78369 0.90958 0.93329 0.92126 0.90372 0.90697 0.89904 0.92233 0.91033 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.99 13.51 21.45 0.29 -56.70 16 2 C -0.01 -0.87 5.39 84.65 0.46 -0.41 16 3 Si 1.11 52.40 29.90 68.60 2.05 54.45 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.62 -35.21 8.33 25.60 0.21 -35.00 16 8 H 0.03 1.96 7.55 -2.91 -0.02 1.94 16 9 C 0.19 8.99 1.93 44.17 0.09 9.07 16 10 H 0.01 0.43 7.26 -2.39 -0.02 0.42 16 11 N -0.84 -36.82 7.58 -171.80 -1.30 -38.12 16 12 C 0.10 4.01 2.06 30.59 0.06 4.08 16 13 H 0.06 2.80 8.13 -2.38 -0.02 2.78 16 14 O -0.57 -23.02 12.14 -148.98 -1.81 -24.83 16 15 C -0.12 -3.65 2.24 -10.07 -0.02 -3.67 16 16 C -0.12 -3.50 5.40 31.70 0.17 -3.33 16 17 C -0.12 -2.61 6.91 31.91 0.22 -2.39 16 18 C -0.12 -2.71 6.83 31.67 0.22 -2.50 16 19 C -0.11 -2.99 6.23 31.31 0.20 -2.80 16 20 H 0.28 17.20 6.39 -92.70 -0.59 16.60 16 21 H 0.33 13.71 7.67 -89.70 -0.69 13.02 16 22 H 0.32 12.00 7.28 -89.69 -0.65 11.34 16 23 H 0.37 12.92 7.71 -74.06 -0.57 12.35 16 24 H 0.07 2.14 6.70 -2.39 -0.02 2.13 16 25 H 0.05 1.63 7.71 -2.39 -0.02 1.61 16 26 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.05 1.58 7.44 -2.39 -0.02 1.56 16 Total: -1.00 -65.62 252.46 0.22 -65.40 By element: Atomic # 1 Polarization: 37.35 SS G_CDS: -0.61 Total: 36.74 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 1.60 Total: -36.95 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -1.01 Total: -94.82 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -1.81 Total: -24.83 kcal Atomic # 14 Polarization: 52.40 SS G_CDS: 2.05 Total: 54.45 kcal Total: -65.62 0.22 -65.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259802366.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.005 kcal (2) G-P(sol) polarization free energy of solvation -65.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds